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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 989 fasta sequence
[TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATAATCACATAACATAATCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTGTTTGTTTGTTTCGATTTTAGTCCCATGGTCAAGTATGTTGAGTTGAGATGGTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATATCCAATGTATTACTGCATTTTTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTATTTGTTTATCTAATCATCTATGTATCTACTTATTT-GCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCANATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGCATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGTTGATTTTACTGTGGTTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAAAGTTTATTGTTATCAGCTCATTGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAGAAATGAACTATTCAATATACGAAAGTATG]
[+] EMBL CD080298 [TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATAATCACATAACATAATCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTGTTTGTTTGTTTCGATTTTAGTCCCATGGTCAAGTATGTTGAGTTGAGATGGTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATATCCAATGTATTACTGCATTTTTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTATTTGTTTATCTAATCATCTATGTATCTACTTATTT GCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCANATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGCATGAA ]
[-] EMBL CD074216 [ CATCTATGTATCTAC TATTTNGCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATCTTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGTTGATTTTACTGTGGTTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAAAGTTTATTGTTATCAGCTCATTGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAGAAATGAACTATTCAATATACGAAAGTATG]
consensusID : consensus_7991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence
[TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAGTACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTACTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTG-GTGATTNTACTGTTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCCTATGAC]
[+] EMBL CD153009 [TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAGTACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTACTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTGTGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGATATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTTTTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTG GTGATTNTACTGT ]
[+] EMBL AI820494 [ AAAATATTCCA TBTGTTTCTCTTTTTCCCCCTCGGTCTTGATAACTTCAACATTTTATGTAACTGATTACTTTTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATCTTTTAACACCGGAAGTAACATAATATATACATGTATGTTTGTCTGTATGAGTTTACAGGTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCCTATGAC]
consensusID : consensus_7991#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence
[TTCGGGCGCNAAGCAATGGNTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATAGCGGGTGTATTACTGCATTTGTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATCTATGTATCTACTTATGTGCTTACTTACATTACTTGTATA]
[+] EMBL AI764845 [TTCGGGCGCNAAGCAATGGNTCTCCTCTCCTCCTCTCTTTTTACTAGTTACGAAGCATTTCGGTACTTGGACTAAAAAAACTACTCTTATGTGAAGTGTTTCTATACGGAGGGGAAAATGTTTTTCAATAGTATAGCGGGTGTATTACTGCATTTGTACGCTTAATTTCCTTTATTCATCGATTTTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATCTATGTATCTACTTATGTGCTTACTTACATTACTTGTATA]
consensusID : consensus_7991#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[GNCCCATNGTCAAGTATGTTGAGTNGAGATGGTCTCCTCTCCTCCTCTCTNTTNACTAGTCACGANGCATTTCGGTACTGGGACTAAAAAGAACTACTCTTATGTGAAGTGTTTCTNTACGGAGGGGAAAATGTCACCAATAGNNTATCCACNGTATTACTGCATTTCTACGCTTAACCTCCTTTANACATCGNTTTCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGTT]
[+] EMBL SM6801 [GNCCCATNGTCAAGTATGTTGAGTNGAGATGGTCTCCTCTCCTCCTCTCTNTTNACTAGTCACGANGCATTTCGGTACTGGGACTAAAAAGAACTACTCTTATGTGAAGTGTTTCTNTACGGAGGGGAAAATGTCACCAATAGNNTATCCACNGTATTACTGCATTTCTACGCTTAACCTCCTTTANACATCGNTTTCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 ------------------------------------------------------------
consensus_7991#1 TTGATGATCCAACAGGTCAACTTGGAACAGTATTACGTATTGGCTTTTTAAACGAATCAG 60
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 --------------TACGNAGGCCAAAAATTCGGCACGAGGACTACATCACATAAACATA 46
consensus_7991#1 TACAAGAGAATCTAGAAAAATATCAATCTCTATATGATATTGTCTTGGTAAACGATAGTA 120
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 ATCACATAACATAATCTTAACATGTAAAGTATGTTGAGACCTTATTGTTTACATTTTTTG 106
consensus_7991#1 CTTTTGAAATTCCTTATAAAATTATTCAAAGTATCCTTTGTCATAATGAATAACAATGTG 180
consensus_7991#2 -----------------------------TTCGGGC-GCNAAGCAATG--GNTCTCC--- 25
consensus_7991#3 -------------------GNCCCATNGTCAAGTAT-GTTGAGTNGAGATGGTCTCC--- 37
consensus_7991#0 TTTGTTTGTTTCGATTTTAGTCCCATGGTCAAGTAT-GTTGAGTTGAGATGGTCTCC--- 162
consensus_7991#1 TGTGTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAA 240
* * * * * *
consensus_7991#2 ---TCTCCTCCTCTCTTTTTACTAGT-TACGA-AGCATTTCGGTACTTGGACTAAAAA-A 79
consensus_7991#3 ---TCTCCTCCTCTCTNTTNACTAGT-CACGA-NGCATTTCGGTACTGGGACTAAAAAGA 92
consensus_7991#0 ---TCTCCTCCTCTCTTTTTACTAGT-TACGA-AGCATTTCGGTACTTGGACTAAAAA-A 216
consensus_7991#1 CATTCTTCAAATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATT 300
*** * ** * * *** * * ** * * * * *** *
consensus_7991#2 ACTACTCTTATGTGAAGTGTTTC-------TATAC----GGAGGGGAAAATGTTTTTCAA 128
consensus_7991#3 ACTACTCTTATGTGAAGTGTTTC-------TNTAC----GGAGGGGAAAATGTCAC-CAA 140
consensus_7991#0 ACTACTCTTATGTGAAGTGTTTC-------TATAC----GGAGGGGAAAATGTTTTTCAA 265
consensus_7991#1 GATA-TCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGCAATGAAAATATTCCATTT 359
** **** * * **** * *** ** ****** *
consensus_7991#2 TAGTATAGCGGGTG-TATTACTGCATTTGTACGCTTAATTTCCTTT---ATTCATCGATT 184
consensus_7991#3 TAGNNTATCCACNG-TATTACTGCATTTCTACGCTTAACCTCCTTT---ANACATCGNTT 196
consensus_7991#0 TAGTATATCCAATG-TATTACTGCATTTTTACGCTTAATTTCCTTT---ATTCATCGATT 321
consensus_7991#1 TTGTTTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTT 419
* * * * * * *** ** ** * ** * * * * ** **
consensus_7991#2 TTATTGTCGTCTATCTATCTATAAATGGTTTGGATCTATTTGTTTATCTAATCATCTATG 244
consensus_7991#3 TCNTNGTCGNCTATCTANCTATAAATAGCGTNAATCTATTTGGTT--------------- 241
consensus_7991#0 TTATTGTCGTCTATCTATCTATAAATAGTTTTAATCTATTTGTTTATCTAATCATCTATG 381
consensus_7991#1 TTTCGGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGT 479
* ** * * * * * * * * * ** *
consensus_7991#2 TATCTACTTATGTGCTTACTTACATTACTTGTATA------------------------- 279
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 TATCTACTTATTTGCTTACTTACATTACTTGTATACACTTACATGCTATAGTTGTTAATC 441
consensus_7991#1 TATCTTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGGTGATTNTACT 539
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 TTCTTTAAGTTCCAATGTTTCATATAAGAGGGAGACTATTTTGTATTTGTGTGTGTGTGT 501
consensus_7991#1 GTTGGTTTCTTTTCTTCGTGGAAAAAAAGACACGAATATATAAGTTTTTTTTTATCAGCC 599
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 GTTGTGTAATATGTTTCAACAGTAGTAATGAATTGCCTAAAGGTGAAAATTTATAAACAT 561
consensus_7991#1 TATGAC------------------------------------------------------ 605
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 TCTTCANATCAATGTCAACTTATATATGAGAATAACTAAAGATCAAGCCTATGGATTGAT 621
consensus_7991#1 ------------------------------------------------------------
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 ATCTTTCATCAGTTGTTCTATGAAAATATACTTTTGGGCATGAAAATATTCCATTTTTGT 681
consensus_7991#1 ------------------------------------------------------------
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 TTCTCTTTTTCTCTCTCTGTCTTGATAACTTCAATATTTTATGTAACTGATTACTTTTTC 741
consensus_7991#1 ------------------------------------------------------------
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 GGTTATATTTTCATATGGACAGAATCATACTTTGTGTGTGTGTGTGTCATTGTGGTTATC 801
consensus_7991#1 ------------------------------------------------------------
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 TTTTAACACCGGAAGTAACATAATATATACATGTGTGTTTGTCTGTTGATTTTACTGTGG 861
consensus_7991#1 ------------------------------------------------------------
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 TTTCTTTTCTTCGTGGGAAAAAAAGAAACGAATATACAAAGTTTATTGTTATCAGCTCAT 921
consensus_7991#1 ------------------------------------------------------------
consensus_7991#2 ------------------------------------------------------------
consensus_7991#3 ------------------------------------------------------------
consensus_7991#0 TGACTCTGTGTTCGTTTCTTGTTTCATTCATACTGTAAGAAATGAACTATTCAATATACG 981
consensus_7991#1 ------------------------------------------------------------
consensus_7991#2 --------
consensus_7991#3 --------
consensus_7991#0 AAAGTATG 989
consensus_7991#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||