These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 920 fasta sequence [AAAAACAAAAAAACAAAACAAAACATTTTTTTGAGCGTATATATATATATTTATATATTGAAAAAAACCAAAAGAAAACCTTTTTTCCGATCGCTTTTACGCTGTTTGTAAGTGTATCAGTTTATTTTTTTCCGCTCATCTTGTGTCCTTACGCAAGTACGAGTGTATTTTCGACATGCACTCACACGTTTTATTTTTCCTCTTTTCCAGGACGGCTGGAAAAGAACGACGAAGTTTCGCAAGGAACCGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGATCAGACGCTGCTAAACGAAGCAAGCTATCAGAAAAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTNTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGACGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTCATAGAAAA-GTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCGAACATAGAAGGTGCTACTGGTATCCAGTTGTAAGACTAGAATATCCGTTGCATCTTCAATACTATCCGCTTGTGCTTTGAGTTGCACCGCTTCGCTCAAATGTGCAGTAGTGTATTGGCGCCTTAACGAGGCTGCTGGTGTTACGTCCCCAGATCGAGACCCCAATGACTCGTTGATCTCTCTTGCTTTTCTCACTTGGCTTAAAGAGTT] [+] EMBL CD178950 [AAAAACAAAAAAACAAAACAAAACATTTTTTTGAGCGTATATATATATATTTATATATTGAAAAAAACCAAAAGAAAACCTTTTTTCCGATCGCTTTTACGCTGTTTGTAAGTGTATCAGTTTATTTTTTTCCGCTCATCTTGTGTCCTTACGCAAGTACGAGTGTATTTTCGACATGCACTCACACGTTTTATTTTTCCTCTTTTCCAGGACGGCTGGAAAAGAACGACGAAGTTTCGCAAGGAACCGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGATCAGACGCTGCTAAACGAAGCAAGCTATCAGAAAAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAATAGCTCATTAAGTGTTCGACATTGGATGCTGACCACGTTGTTTAAGTGGACTTGTTTAGCTGAAGGCTNTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGACGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTCATAGAAAA GTCCTCGATATATTGGTAACGAATCA ] [-] EMBL CD131266 [ TTACGCTGTTTGTAAGTGTATCAGTTTATTTTTTTCCGCTCATCTTGTGTCCTTACGCAAGTACGAGTGTATTTTCGACATGCACTCACACGTTTTATTTTTCCTCTTTTCCAGGACGGCTGGAAAAGAACGACGAAGTTTCGCAAGGAACCGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTTGGTCCCATAGTTTAAGGAAAGACGACCAGACGCTGCTAAACGAAGCAAGCTATCAGAAGAGTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTGGCTGGTCACGTCTTAGGGGCATCACTACCTCACTAGGGGGGGAGTGATCTGTAGCTGTAAATAATTC ] [-] EMBL CD194272 [ GCTGAAGGCTTTCGGTCATGCATCCGCACCAGATCACGTTTCAACACAGCGTGGGACACAGCTCCTACGTTTCATTAGCCAGCTTATAGAAAAGGTCCTCGATATATTGGTAACGAATCAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGATCGAACATAGAAGGTGCTACTGGTATCCAGTTGTAAGACTAGAATATCCGTTGCATCTTCAATACTATCCGCTTGTGCTTTGAGTTGCACCGCTTCGCTCAAATGTGCAGTAGTGTATTGGCGCCTTAACGAGGCTGCTGGTGTTACGTCCCCAGATCGAGACCCCAATGACTCGTTGATCTCTCT ] [+] EMBL CD136074 [ GTGCTACTGGTGTCCAGTTGTAAAACTAGAATATCCGTTGCATCTTCAATACTATCCGCTTGTGCTTTGAGTTGCACCGCTTCGCTCAAATGTGCAGTAGTGTATTGGCGCCTTAACGAGGCTGCTGGTGTTACGTCCCCAGATCGAGACCCCAATGACTCGTTGATCTCTCTTGCTTTTCTCACTTGGCTTAAAGAGTT] consensusID : consensus_8034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [GTTGGTGTTGCCGATTTATTCGAACCACATCAAGCTGCCAAAAAGCTAAACTTGCCAAAGATTCTTAACGTCAATTCTCAACGTGATCATAGTAATTCACGTGATGAATCTGAAGGTGGGTTCGGACTTATCCATACAGAGACTAAAATAAAGAGACGGTATTTTCTTGACGAAACAACCCAGAATTTTCAAGAAAACCATGCATCAATCTTTTCTAATTTCCAGCTCCGTAAAGGTAAGGAACTTTTTATGAAGTATTGTCATGGTATTAGCTAAGTAAATCCCAGAGTTTGATGCATAATATTTATACTTTAGTTTCAGATATCCGTCTATCAATTAAGGGACGAGTATACTGCGCAGCAGTTCGCTCTGTTCTACTTTACGGCTGTGAAACATGGCCATTAAGAGTAGAAGATACTCGCAAGTTACTAGTATTTGACCACAGATGTCTTGGAAATATTGCTCACATCTGCTGGGATCACCGGGTAAGTAATAGTGAGGTTAGATTCAGGGTATTAGGGAATGATGGTAAATCAGTTGATAAGGTGATGAATCTTCATCGACTGAGATGGTTGCGCCACGTGTTACGTACGCCTGAACACCGATTACCACGACGCG] [+] EMBL CD078686 [GTTGGTGTTGCCGATTTATTCGAACCACATCAAGCTGCCAAAAAGCTAAACTTGCCAAAGATTCTTAACGTCAATTCTCAACGTGATCATAGTAATTCACGTGATGAATCTGAAGGTGGGTTCGGACTTATCCATACAGAGACTAAAATAAAGAGACGGTATTTTCTTGACGAAACAACCCAGAATTTTCAAGAAAACCATGCATCAATCTTTTCTAATTTCCAGCTCCGTAAAGGTAAGGAACTTTTTATGAAGTATTGTCATGGTATTAGCTAAGTAAATCCCAGAGTTTGATGCATAATATTTATACTTTAGTTTCAGATATCCGTCTATCAATTAAGGGACGAGTATACTGCGCAGCAGTTCGCTCTGTTCTACTTTACGGCTGTGAAACATGGCCATTAAGAGTAGAAGATACTCGCAAGTTACTAGTATTTGACCACAGATGTCTTGGAAATATTGCTCACATCTGCTGGGATCACCGGGTAAGTAATAGTGAGGTTAGATTCAGGGTATTAGGGAATGATGGTAAATCAGTTGATAAGGTGATGAATCTTCATCGACTGAGATGGTTGCGCCACGTGTTACGTACGCCTGAACACCGATTACCACGACGCG] consensusID : consensus_8034#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [GAGTAGAAGATACTCTTAATTTACTAGTATTTGACCACAGATGCCTTAGAAATATTGCTCGCATCTGCTGGGATCACCAGGTAAGTAATAGTGAGATTAGACACAGGGTATTAGGGAATAATGGTAAATCAGTTGATGAGGCCATGAATCTTCATCGACTGAGATGGTTAGGCCACGCGTTACGTATGCCTGAACACCGATTACCACGACGTGCTATGCTGACTAGTGTAGGGGAGACAATAAAATAGGAAGCAATGTATTATTCTTTTTGGCAGAATTTTATGTTACCAAAAGCTCATAAAACTATTACTAGTGCTAAAAGTCGGGACAAATTGATATCAAATGTAAACAGATTTTTTTATTATTACGTTAGAAGATTAAATGTATGCTGAGAAAATTAGGATTTCGTAGCACCGAACTTATTATTTTGCANAACAAAGGAGGAAAGTAAGTCTAAAGAAGACAATAATCATAGATACCATGCCGTAATGAGAAACCTTCTATAAGGCAGTAAGGACAAACGTGTGGTACAATATTTATTAGCCAACCAAAATCAAATGGTAGTCAACACTGAAA] [+] EMBL CD115970 [GAGTAGAAGATACTCTTAATTTACTAGTATTTGACCACAGATGCCTTAGAAATATTGCTCGCATCTGCTGGGATCACCAGGTAAGTAATAGTGAGATTAGACACAGGGTATTAGGGAATAATGGTAAATCAGTTGATGAGGCCATGAATCTTCATCGACTGAGATGGTTAGGCCACGCGTTACGTATGCCTGAACACCGATTACCACGACGTGCTATGCTGACTAGTGTAGGGGAGACAATAAAATAGGAAGCAATGTATTATTCTTTTTGGCAGAATTTTATGTTACCAAAAGCTCATAAAACTATTACTAGTGCTAAAAGTCGGGACAAATTGATATCAAATGTAAACAGATTTTTTTATTATTACGTTAGAAGATTAAATGTATGCTGAGAAAATTAGGATTTCGTAGCACCGAACTTATTATTTTGCANAACAAAGGAGGAAAGTAAGTCTAAAGAAGACAATAATCATAGATACCATGCCGTAATGAGAAACCTTCTATAAGGCAGTAAGGACAAACGTGTGGTACAATATTTATTAGCCAACCAAAATCAAATGGTAGTCAACACTGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8034#1 ------------------------------------------------------------ consensus_8034#2 ------------------------------------------------------------ consensus_8034#0 AAAAACAAAAAAACAAAACAAAACATTTTTTTGAGCGTATATATATATATTTATATATTG 60 consensus_8034#1 ----------------GTTGGTGTTGCCGATTTATTCGAACCACATCA-AGCTGCCAAAA 43 consensus_8034#2 -----------GAGTAGAAGATACTCTTAATTTACTAGTATTTGACCACAGATGCCTTAG 49 consensus_8034#0 AAAAAAACCAAAAGAAAACCTTTTTTCCGATCGCTTTTACGCTGTTTGTAAGTGTATCAG 120 * * ** * * ** * consensus_8034#1 AGCTAAACTTGCCAAAGATTCTTAACGTCAATTCTCAACGTGATCATAGTAATTCACGTG 103 consensus_8034#2 AAATA---TTGCTCGCATCTGCTGGGATCACCAGGTAA-GTAATAGTGAGATTAGACACA 105 consensus_8034#0 T-TTATTTTTTTCCGCTCATCTTG-TGTCCTTACGCAA-GTACGAGT-GTATTTTCGACA 176 ** ** * * ** ** ** * * * consensus_8034#1 ATGAATCTGAAGGTGGGTTCGGACTTATCCATACAGAGACTAAAATAAAGAGACGGTATT 163 consensus_8034#2 GGGTATTAGGGAATAATGGTAAATCAGTTGATGAGGCCATGAATCTTCATCGACTGAGAT 165 consensus_8034#0 TGCACTCACACGTTTTATTTTTCCTCTTTTCCAGGACGGCTGGAAAAGAACGAC-GAAGT 235 * * * * *** * * consensus_8034#1 TTCTTGACGAAACAACCCAGAATTTTCAAGAAAACCATGCATCAATCTTTTCTAATTTCC 223 consensus_8034#2 GGTTAGGCCACGCGTTACGTATGCCTGAACACCGAT-TACCACGACGTGCTATGCTGACT 224 consensus_8034#0 TTCGCAAGGAACCGAAATTTTCATTGTACTATATTTCTTTATTGCTACGTTGTACATTTT 295 * * * * * * * consensus_8034#1 AGCTCCGTAA---AGGTAAGGAACTTTTTATGAAGTATTGTCATGGTATTAGCTAAGTAA 280 consensus_8034#2 AGTGTAGGGG---AGACAATAAAAT----AGGAAGCAATGT-ATTATTCTTTTTGGCAGA 276 consensus_8034#0 GGTCCCATAGTTTAAGGAAAGACGATCAGACGCTGCTAAACGAAGCAAGCTATCAGAAAA 355 * * ** * * * * * * consensus_8034#1 ATCCCAGAGTTTGATG----CATAATATTTATACTTTAGTTTCAGATATCCGTCTATCAA 336 consensus_8034#2 ATTTTATGTTACCAAAAGCTCATAAAACTATTACT--AGTGCTAAAAGTCGG---GACAA 331 consensus_8034#0 GTGTTTACCAACGACAAACTCGTTGGGTTTAAACTTCTG-GCTGGTCACGTCTTAGGGGC 414 * * * * * *** * consensus_8034#1 TTAAGGGACGAGTATACTGCGCAGCAGTTCGCT-CTGTT-CTACTTTACGGCTGTGAAAC 394 consensus_8034#2 ATTGATATCAAATGTA------AACAGATTTTT-TTATTATTACGTTA-GAAGATTAAAT 383 consensus_8034#0 ATCACTACCTCACTAGGAGGGGAGTGATCTGTAGCTGTAAATAATTCCCCAAAATCAA-- 472 * * * * * ** * * ** consensus_8034#1 ATG-GCCATTAAGAGTAGAAGATACTCGCAAGTTACT-AGTATTTGACCACAGATGTCTT 452 consensus_8034#2 GTATGCTGAGAAAATTAGGATTTCGTAGCACCGAACTTATTATTTTGCANAACAAAGGAG 443 consensus_8034#0 -TAGCTCATTAAGTGTTCGACATTG-GATGCTGACCACGTTGTTTAAGTGGACTTGTTTA 530 * ** * * * * * *** * consensus_8034#1 G--GAAATATTGCTCACATCTGCTGGGATCACCGGGTAAGTAATAGTGAGGTTAGATTCA 510 consensus_8034#2 G--AAAGTAAGTCTAAAGAAGACAATAATCATAG---ATACCATGCCGTAATGAGAAACC 498 consensus_8034#0 GCTGAAGGCTNTCGGTCATGCATCCGCACCAGATCACGTTTCAACACGACGTGGGACACA 590 * ** * * ** * * * ** * consensus_8034#1 G---------GGTATTAGGGAA-TGATGGTAAATCAGTTGATAAGGTGATGAATCTTCAT 560 consensus_8034#2 T---------TCTATAAGGCAG-TAAGGACAAACGTGT-GGTACAATATTTA---TTAGC 544 consensus_8034#0 GCTCCTACGTTTCATTAGCCAGCTCATAGAAAAGTCCTCGATATATTGGTAA---CGAAT 647 ** ** * * * *** * * ** * * * consensus_8034#1 CGACTGAGATGGTTGCGCCACGTGTTACGT-ACGCCTGAACACCGATTACCACGACGCG- 618 consensus_8034#2 CAACCAAAAT--------CAAATGGTAGTC-AACACTGAAA------------------- 576 consensus_8034#0 CAAATATATCTTTCCTGCCTCTTCTCGTCTGACTTCTGATTTCTATCTGACTGGGAACGA 707 * * * * * **** consensus_8034#1 ------------------------------------------------------------ consensus_8034#2 ------------------------------------------------------------ consensus_8034#0 TCGAACATAGAAGGTGCTACTGGTATCCAGTTGTAAGACTAGAATATCCGTTGCATCTTC 767 consensus_8034#1 ------------------------------------------------------------ consensus_8034#2 ------------------------------------------------------------ consensus_8034#0 AATACTATCCGCTTGTGCTTTGAGTTGCACCGCTTCGCTCAAATGTGCAGTAGTGTATTG 827 consensus_8034#1 ------------------------------------------------------------ consensus_8034#2 ------------------------------------------------------------ consensus_8034#0 GCGCCTTAACGAGGCTGCTGGTGTTACGTCCCCAGATCGAGACCCCAATGACTCGTTGAT 887 consensus_8034#1 --------------------------------- consensus_8034#2 --------------------------------- consensus_8034#0 CTCTCTTGCTTTTCTCACTTGGCTTAAAGAGTT 920 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||