cluster # 8039

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Schistosoma mansoni
cluster # 8039 cluster # 8039 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8039#0 length = 765 sequences # 5

consensus_8039#1 length = 459 sequences # 1

consensusID : consensus_8039#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 765
fasta sequence

                              [GGAGCCATTAATTCGGCACCAGGCGCTTTCGACGATGGGT-ACTATGT-AATTTTCGAAGCAGTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTAT-AAAATACCTAAACACTCAAAAGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCCAAATAGACAAAGATGACCCAAGTTCACCATCTAATGTTACTC-CACCCCAGTCCGA-TATTCTAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTGACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGTTGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCTTGGTTTGGGAAACGCATAAAGCGTAATTCTTTATATGATTCACCTGGTCTGTATGTCAGATTTCGACACAAGCAGAACTATGAAAAGTGTATGAAAAAGGAGCAACAGGTTTATAAAGAAAATGTGACCGATCCAACCGATATCTCATAACTGAACTCATGAGAAGTCATGCAAATTAAATAAAAACATTGCATGTTCTGCTATACTGTTATTCAGAACCCTGTCTTTCTCGGGATATTTTTCTAGTTTTGTACATAAGTAATCATTTTCTCTTGTTCATCACTTTTTGTGAAAAAGATTCTCATCGATATCCTTTAATCTTATTGTTGTGTATCAAATA-A-ACCATTG]

[+] EMBL CD081483             [GGAGCCATTAATTCGGCACCAGGCGCTTTCGACGATGGGTAACTATGTAAATTTTCGAAGCAGTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTATAAAAATACCTAAACACTCAAAAGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCCAAATAGACAAAGATGACCCAAGTTCACCATCTAATGTTACTC CACCCCAGTCCGA TATTCTAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTGACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGTTGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCTTGGTTTGGGAAACGCATAAAGCGTAATTCTTTATATGATTCACCTGGTCTGTATGTCAGATTTCGACACAAGCAGAACTATGAAAAGTGTATGAAAAAGGAGCAACAGGTTTATAAAGAAAATGTGACCGATCCAACCGATATCTCATAACTGAACTCATGAGAAGTCATGCAAATTAAATAAAAACATTGCATGTTCTGCTATACTGTTATTCAGAACCCTGTCTTTCTCGGGATATTTTTCTAGTTTTGTACATAAGTAATCATTTTCTCTTGTTCATCACTTTTTGTGAAAAAGATTCTCATCGATATCCTTTAATCTTATTGGTGTGTATCANATA A ACCATT ]
[+] EMBL CD083998             [              cggttaAGGCGC TTCGACGATGGGT ACTATGT AATTTTCGAAGCAGTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTAT AAAATACCTAAACACTCAAAAGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCCAAATAGACAAAGATGACCCAAGTTCACCATCTAATGTTACTC CACCCCAGTCCGAGTATTCTAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTGACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGTTGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCTTGGTTTGGGAAA                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD083918             [                                   TGGGT ACTATGT AATTTTCGAAGCAGTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTAT AAAATACCTAAACACTCAAAAGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCCAAATAGACAAAGATGACCCAAGTTCACCATCTAATGTTACTC CACCCCAGTCCGA TATTCTAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTGACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGTTGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCTTGGTTTGGGAAACGCATAAAGCGTAAATCTTTATA                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD075307             [                                                                                                                                                                                             AGATGACCCAAGTTCACCATCTAATGTTACTC CACCCCAGTCCGA TA TCTAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTGACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGTTGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCTTGGTTTGGGAAACGCATAAAGCGTAATTCTTTATATGATTCACCTGGTCTGTATGTCAGATTTCGACACAAGCAGAACTATGAAAAGTGTATGAAAAAGGAGCAACAGGTTTATAAAGAAAATGTGACCGATCCAACCGATATCTCATAACTGAACTCATGAGAAGTCATGCAAATTAAATAAAAACATTGCATGTTCTGCTATACTGTTATTCAGAACCCTGTCTTTCTCGGGATATTTTTCTAGTTTTGTACATAAGTAATCATTTTCTCTTGTTCATCACTTTTTGTGAAAAAGATTCTCATCGATATCCTTTAATCTTATTGTTGTGTATCAAATA A ACCATTG]
[-] EMBL CD077299             [                                                                                                                                                                                                TGACCCAAGTTCACCATCTAATGTTACTCGCACCCCAGTCCGA TATTCTAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTGACTGAAGACGATTCAATACACCGAGGTAATAAGTCATCCTCACTGTCGGATACTGAGGTTGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCTTGGTTTGGGAAACGCATAAAGCGTAAATCTTTATATGATTCACCTGGTCTGTATGTCAGATTTCGACACAAGCAGAACTATGAAAAGTGTATGAAAAAGGAGCAACAGGTTTATAAAGAAAATGTGACCGATCCAACCGGTATCTCATAACTGAACTCATGAGAAGTCATGCAAATTAAATAAAAACATTGCATGTTCTGCTATACTGTTATTCAGAACCCTGTCTTTCTCGGGATATTTTTCTAGTTTTGTACATAAGTAATCATTTTCTCTTGTTCATCACTTTTTGTGAAAAAGATTCTCATCGATATCCTTTAATCTTATTGTTGTGTATCAAATAGAGACCATTG]




>consensus_8039#0
GGAGCCATTAATTCGGCACCAGGCGCTTTCGACGATGGGTACTATGTAATTTTCGAAGCA
GTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTATAAAATACCTAAACACTCAAA
AGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCCAAAT
AGACAAAGATGACCCAAGTTCACCATCTAATGTTACTCCACCCCAGTCCGATATTCTAAC
GGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTGACT
GAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGTTGCA
CACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCTTGG
TTTGGGAAACGCATAAAGCGTAATTCTTTATATGATTCACCTGGTCTGTATGTCAGATTT
CGACACAAGCAGAACTATGAAAAGTGTATGAAAAAGGAGCAACAGGTTTATAAAGAAAAT
GTGACCGATCCAACCGATATCTCATAACTGAACTCATGAGAAGTCATGCAAATTAAATAA
AAACATTGCATGTTCTGCTATACTGTTATTCAGAACCCTGTCTTTCTCGGGATATTTTTC
TAGTTTTGTACATAAGTAATCATTTTCTCTTGTTCATCACTTTTTGTGAAAAAGATTCTC
ATCGATATCCTTTAATCTTATTGTTGTGTATCAAATAAACCATTG

consensusID : consensus_8039#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [CCTCGAGGCGAGAATCGGCACGAGGCGCTTTCGACGATGGGTAACTATTAATTTTCGAAGCAGTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTATAAAAATACCTAAACACTCAAAAGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCCAAATAGACAAAGATGACCCAAGTTCACCATCTAATGTTACTCCACCCCAGTCCGATATTCTAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTGACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGTTGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCTTGGTTTGGGAAACGCATAAAGCGTAAATCTTTATATGAT]

[+] EMBL CD084146             [CCTCGAGGCGAGAATCGGCACGAGGCGCTTTCGACGATGGGTAACTATTAATTTTCGAAGCAGTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTATAAAAATACCTAAACACTCAAAAGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCCAAATAGACAAAGATGACCCAAGTTCACCATCTAATGTTACTCCACCCCAGTCCGATATTCTAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTGACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGTTGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCTTGGTTTGGGAAACGCATAAAGCGTAAATCTTTATATGAT]




>consensus_8039#1
CCTCGAGGCGAGAATCGGCACGAGGCGCTTTCGACGATGGGTAACTATTAATTTTCGAAG
CAGTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTATAAAAATACCTAAACACTC
AAAAGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCCA
AATAGACAAAGATGACCCAAGTTCACCATCTAATGTTACTCCACCCCAGTCCGATATTCT
AACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTTG
ACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGTT
GCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTCT
TGGTTTGGGAAACGCATAAAGCGTAAATCTTTATATGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8039#0      ---GGAGCCATTAATTCGGCACCAGGCGCTTTCGACGATGGGTACTATGTAATTTTCGAA 57
consensus_8039#1      CCTCGAGGCGAGAAT-CGGCACGAGGCGCTTTCGACGATGGGTAACTATTAATTTTCGAA 59
                          *** *   *** ****** *********************     ***********

consensus_8039#0      GCAGTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTATAAAA-TACCTAAACACT 116
consensus_8039#1      GCAGTCCACCAGTCAAGCAGACAGATAAACTCTTAACGCCTATAAAAATACCTAAACACT 119
                      *********************************************** ************

consensus_8039#0      CAAAAGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCC 176
consensus_8039#1      CAAAAGTTCTAGACCTTGATCCACGTTCACCCAGTGATGGGATAGTGAGAACCCCAATCC 179
                      ************************************************************

consensus_8039#0      AAATAGACAAAGATGACCCAAGTTCACCATCTAATGTTACTCCACCCCAGTCCGATATTC 236
consensus_8039#1      AAATAGACAAAGATGACCCAAGTTCACCATCTAATGTTACTCCACCCCAGTCCGATATTC 239
                      ************************************************************

consensus_8039#0      TAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTT 296
consensus_8039#1      TAACGGGCTTAGTCCTGGGATACCCTGCTTCAACAACTATGAAACTCCTGATGGTGTTTT 299
                      ************************************************************

consensus_8039#0      GACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGT 356
consensus_8039#1      GACTGAAGACGATTCAATACACCGAGGTAACAAGTCATCCTCACTGTCGGATACTGAGGT 359
                      ************************************************************

consensus_8039#0      TGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTC 416
consensus_8039#1      TGCACACAACACGAAAACTAAGACTCGCACGTGTGATTCGAATAGTAAATTCAGACTGTC 419
                      ************************************************************

consensus_8039#0      TTGGTTTGGGAAACGCATAAAGCGTAATTCTTTATATGATTCACCTGGTCTGTATGTCAG 476
consensus_8039#1      TTGGTTTGGGAAACGCATAAAGCGTAAATCTTTATATGAT-------------------- 459
                      *************************** ************                    

consensus_8039#0      ATTTCGACACAAGCAGAACTATGAAAAGTGTATGAAAAAGGAGCAACAGGTTTATAAAGA 536
consensus_8039#1      ------------------------------------------------------------
                                                                                  

consensus_8039#0      AAATGTGACCGATCCAACCGATATCTCATAACTGAACTCATGAGAAGTCATGCAAATTAA 596
consensus_8039#1      ------------------------------------------------------------
                                                                                  

consensus_8039#0      ATAAAAACATTGCATGTTCTGCTATACTGTTATTCAGAACCCTGTCTTTCTCGGGATATT 656
consensus_8039#1      ------------------------------------------------------------
                                                                                  

consensus_8039#0      TTTCTAGTTTTGTACATAAGTAATCATTTTCTCTTGTTCATCACTTTTTGTGAAAAAGAT 716
consensus_8039#1      ------------------------------------------------------------
                                                                                  

consensus_8039#0      TCTCATCGATATCCTTTAATCTTATTGTTGTGTATCAAATAAACCATTG 765
consensus_8039#1      -------------------------------------------------