These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 894 fasta sequence [GCAGACCAGTTAATAGCTACTTTTACACAACACACCAAAACTTTACGAAAATCATGAACGAAGCGACTTACAAACTAGAAGAGATTAAACATCATGCTGATCAGTCGTATTTTGACAGGACGACCATTAAGCCCACATTGAAAGAAGTCCATTGTGCGACGTCAAGCGACTTTATGTCGAAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGGTTAGTCTTAATGAAGCGTTTATCAGAACACCCACTGTCGTATTTGGTCGAAGAATTTATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGCACGACTTCTAGAAGTATTTCCTGAGCTTGGAAATCGAGAACAAATAGTATTCCCTTTACAACAAACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAGTTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGATCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGG--AACGTAAGCAACCAGGTCAAAGAAAAGCACGCAAGAAGCCTATTTGGAAGGCACGCTAA-ATTCACAAGTACTGAAATAAAATGCANNNGC-AC-ACATTNTTCCTTTTCATTAGNCG-TC-ATACTGGNCCGCAGATTTC-NCGNCTTGGNTTTCAGCTCGATCATC-AANGAAGAAAGC-CAGATG] [-] EMBL CD146092 [GCAGACCAGTTAATAGCTACTTTTACACAACACACCAAAACTTTACGAAAATCATGAACGAAGCGACTTACAAACTAGAAGAGATTAAACATCATGCTGATCAGTCGTATTTTGACAGGACGACCATTAAGCCCACATTGAAAGAAGTCCATTGTGCGACGTCAAGCGACTTTATGTCGAAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGGTTAGTCTTAATGAAGCGTTTATCAGAACACCCACTGTCGTATTTGGTCGAAGAATTTATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTAT ] [+] EMBL CD083203 [ GAGGCGACTTACAAACTAGAAGAGATTAAACATCATGCTGATCAGTCGTATTTTGACAGGACGACCATTAAGCCCACATTGAAAGAAGTCCATTGTGCGACGTCAAGCGACTTTATGTCGAAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGGTTAGTCTTAATGAAGCGTTTATCAGAACACCCACTGTCGTATTTGGTCGAAGAATTTATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGCACGACTTCTAGAAGTATTTCCTGAGCTTGGAAATCGAGAACAAATAGTATTCCCTTTACAACAAACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAGTTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGATCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGGAAAACGT AGC ACCAGGTCAAAGAAAAGCACGNCAGAAGCCTATTTGGAAGGCACGCTAANNNTCAC AGTACTGAAATAAAATGCANNNGC AC ACATTNTTCCTTTTCATTAGNCG TC ATACTGGNCCGCAGATTTC NCGNCTTGGNTTTCAGCTCGATCATC AANGAAGAAAGC CAG ] [+] EMBL CD198268 [ CGACTTTATGTCGAAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGGTTAGTCTTAATGAAGCGTTTATCAGAACACCCACTGTCGTATTTGGTCGAAGAATTTATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGC ] [-] EMBL CD076778 [ ATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGCACGACTTCTAGAAGTATTTCCTGAGCTTGGAAATCGAGAACAAATAGTATTCCCTTTACAACAAACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAGTTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGATCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGG AACGTAAGCAACCAGGTCAAAGAAAAGCACGCAAGAAGCCTATTTGGAAGGCACGCTAA ATTCACAAGTACTGAATAAAAATGCA AGCAACAACATTTTTCCTTTTCATTAG CGTTCAATACTGGCCCGCAGATTTCGCCGCCTTGGTTTCCAGCTCGATCATCTAAAGAAGAAAGCACAGATG] [+] EMBL CD170693 [ AACAAATAGTATTCCCTTTACAACAAACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAGTTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGATCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGG AACGTAAGCAACCAGGTCAAAGAAAAGCACGCAAGAAGCCTATTTGGAAGGCACGCTAA ATTCACAAGTACTG ] consensusID : consensus_8042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [AATATATTTAATCGTAATGACTTTTTAATTTTATTATCCATTTCAGGAAGGCACGCTAAATTCACAAGTACTGAATAAAAATGCAAGCAACAACATTTTTCCTTTTCATTAGCGTTCAATACTGGCCCGCAGATTTCGCCGCCTTGGTTTCCAGCTCGATCATTCGTTTAACATACTTTGGATTTGTCACTAGCCGGTCAGTTAACTGCATAAAATGCTTGTCCAAATTCACACATTCTGTTATTTTTTCCTGAAGAATTCGAAGCATTTTGATCGAGTCATACTGCTCGGGGTCATCGAGGAAATGAACAGTCCCACTTTGTTGATCGATGATTGCAAAAATAGCTTTTGACTTAATCATATCTAAAATCTGTTTCTCC] [+] EMBL CD077177 [AATATATTTAATCGTAATGACTTTTTAATTTTATTATCCATTTCAGGAAGGCACGCTAAATTCACAAGTACTGAATAAAAATGCAAGCAACAACATTTTTCCTTTTCATTAGCGTTCAATACTGGCCCGCAGATTTCGCCGCCTTGGTTTCCAGCTCGATCATTCGTTTAACATACTTTGGATTTGTCACTAGCCGGTCAGTTAACTGCATAAAATGCTTGTCCAAATTCACACATTCTGTTATTTTTTCCTGAAGAATTCGAAGCATTTTGATCGAGTCATACTGCTCGGGGTCATCGAGGAAATGAACAGTCCCACTTTGTTGATCGATGATTGCAAAAATAGCTTTTGACTTAATCATATCTAAAATCTGTTTCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8042#0 GCAGACCAGTTAATAGCTACTTTTACACAAC-ACACCAAAACTTTACGAAAATCATGAAC 59 consensus_8042#1 -----------AATA--TATTTAATCGTAATGACTTTTTAATTTTATTATCCATTTCAGG 47 **** ** ** * ** ** ** **** * * * consensus_8042#0 GAAGCGACTTACAAACTAGAAGAGATTAAACATCATGCTGATCAGTCGTATTTTGACAGG 119 consensus_8042#1 AAGGCACGCTA--AATTCACAAGTACTGAATAAAAATGCAAGCAACAACATTTTT----- 100 * ** ** ** * * * * ** * * * ** ***** consensus_8042#0 ACGACCATTAAGCCCACATTGAAAGAAGTCCATTGTGCGACGTCAAGCGACTTTATGTCG 179 consensus_8042#1 ----CCTTTTCATTAGCGTTCAATACTGGCC----CGCAGATTTCGCCGCCTTGGTTTCC 152 ** ** * ** ** * ** ** * ** *** * ** consensus_8042#0 AAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGG 239 consensus_8042#1 AG-------CTCGATCATTCGTTTAACA----TACTTTGGATTTGTCAC-TAGCCGGTCA 200 * *** * * ***** ** * **** ** * ** consensus_8042#0 TTAGTCTTAATGAAGCGTTTATCAGAACACCCAC----TGTCGTATTTGGTCGAAGAATT 295 consensus_8042#1 GTTAACTGCATAAAATGCTTGTCCAAATTCACACATTCTGTTATTTTTTCCTGAAGAATT 260 * ** ** ** * ** ** ** * *** *** * *** ******** consensus_8042#0 TATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCC 355 consensus_8042#1 CGA--AGCATTTTGA--TCGAGTCATACTGCTCGGGGTCATCGAGGAAATGAACAGTCCC 316 *** **** * * * ** * * * *** ** **** * * ** consensus_8042#0 ATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTC 415 consensus_8042#1 ACTTTGTTGATCGATGATTG-CAAAAATAGCTTTTG---ACTTAATCATATCTAAAATCT 372 * ** ** * * ** *** * * * ** *** * **** consensus_8042#0 GTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGCACG 475 consensus_8042#1 GTTTCTCC---------------------------------------------------- 380 **** consensus_8042#0 ACTTCTAGAAGTATTTCCTGAGCTTGGAAATCGAGAACAAATAGTATTCCCTTTACAACA 535 consensus_8042#1 ------------------------------------------------------------ consensus_8042#0 AACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAG 595 consensus_8042#1 ------------------------------------------------------------ consensus_8042#0 TTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGA 655 consensus_8042#1 ------------------------------------------------------------ consensus_8042#0 TCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGGA 715 consensus_8042#1 ------------------------------------------------------------ consensus_8042#0 ACGTAAGCAACCAGGTCAAAGAAAAGCACGCAAGAAGCCTATTTGGAAGGCACGCTAAAT 775 consensus_8042#1 ------------------------------------------------------------ consensus_8042#0 TCACAAGTACTGAAATAAAATGCANNNGCACACATTNTTCCTTTTCATTAGNCGTCATAC 835 consensus_8042#1 ------------------------------------------------------------ consensus_8042#0 TGGNCCGCAGATTTCNCGNCTTGGNTTTCAGCTCGATCATCAANGAAGAAAGCCAGATG 894 consensus_8042#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||