cluster # 8043

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Schistosoma mansoni
cluster # 8043 cluster # 8043 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8043#0 length = 513 sequences # 5

consensus_8043#1 length = 293 sequences # 1

consensusID : consensus_8043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 513
fasta sequence

                              [TAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGCACAGGTGAAAGGTCTTCAGCGCGCGATGTCAGAAATGGAAGTTGATGATACAGGGCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAATGGGAACTGCAAAAATATGGCCACTGAGTGGACCTGGTGATTGTTTTTTGACTTGTCAGTTACGGTTGTACCTGTTCAGATAATAAAATCATTAGACACAACGTTGTTCTTTTTTATTACTTTTGTAACGTTCTCTACC]

[+] EMBL CD159227             [TAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGCACAGGTGAAAGGTCTTCAGCGCGCGATGTCAGAAATGGAAGTTGATGATACAGGGCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGCTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATG                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD159193             [TAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGCACAGGTGAAAGGTCTTCAGCGCGCGATGTCAGAAATGGAAGTTGATGATACAGGGCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATG                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD083592             [                                                                                    TGGAAGTTGATGATACAGGTCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAATGGGAACTGCAAAAATATGGCCACTGAGTGGACCTGGTGATTGTTTTTTGACTTGTCAGTTACGGTTGTACCTGTTCAGATAATAAAAT                                                  ]
[+] EMBL CD187974             [                                                                                            GATGATACAGGGCCAGTGGCATCCCTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACGGGTTTGCCCTCTAGACAACCGTGAACGGGAACTGCAAAAATATGGCCACTGAGTGGACCTGGTGATTATTTTTTGACTTGTCAGTTACGGTTGTACCTGTTCAGATNATAAAATCATTAGACACAACGTTGTTCTTTTTTATTACTTTTGTAACGTTCTCTACC]
[+] EMBL CD147388             [                                                                                                                    CTCAGTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAATGGGAAC                                                                                                                                    ]




>consensus_8043#0
TAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGCACAGGTGAAAG
GTCTTCAGCGCGCGATGTCAGAAATGGAAGTTGATGATACAGGGCCAGTGGCATCCCTCA
GTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGG
ATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTATTGAAT
GTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTA
ATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTC
TAGACAACCGTGAATGGGAACTGCAAAAATATGGCCACTGAGTGGACCTGGTGATTGTTT
TTTGACTTGTCAGTTACGGTTGTACCTGTTCAGATAATAAAATCATTAGACACAACGTTG
TTCTTTTTTATTACTTTTGTAACGTTCTCTACC

consensusID : consensus_8043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [TGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTTTGCTTGGGTTATTCTCTGCTCATATTATACATAATAGGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAA]

[+] EMBL CD131284             [TGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTTTGCTTGGGTTATTCTCTGCTCATATTATACATAATAGGTATTGAATGTCAAGCTAACCACGCCTCTGCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAA]




>consensus_8043#1
TGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGGA
TATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTTTGCTTGG
GTTATTCTCTGCTCATATTATACATAATAGGTATTGAATGTCAAGCTAACCACGCCTCTG
CTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCACT
GTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8043#0      TAATCATGCTTTTCATTTTCACTGTATATCCCGATGGTTGAAAACAAGCACAGGTGAAAG 60
consensus_8043#1      ------------------------------------------------------------
                                                                                  

consensus_8043#0      GTCTTCAGCGCGCGATGTCAGAAATGGAAGTTGATGATACAGGGCCAGTGGCATCCCTCA 120
consensus_8043#1      ------------------------------------------------------------
                                                                                  

consensus_8043#0      GTGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGG 180
consensus_8043#1      -TGAGAATAAGAAACGTTTCGAGATAAAAAAGTGGTATGCGGTTGCTTTATGGGCCTGGG 59
                       ***********************************************************

consensus_8043#0      ATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGT------- 233
consensus_8043#1      ATATCGTTGTTGATAATTGTGCTATCTGCCGGAATCACATAATGGACTTATGTTTGCTTG 119
                      *****************************************************       

consensus_8043#0      ---------------------------------ATTGAATGTCAAGCTAACCACGCCTCT 260
consensus_8043#1      GGTTATTCTCTGCTCATATTATACATAATAGGTATTGAATGTCAAGCTAACCACGCCTCT 179
                                                       ***************************

consensus_8043#0      GCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCAC 320
consensus_8043#1      GCTACAAGTGAAGAGTGCACTGTTGCTTGGGGTGTTTGTAATCATGCTTTTCATTTTCAC 239
                      ************************************************************

consensus_8043#0      TGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAATGGGAA 380
consensus_8043#1      TGTATATCCCGATGGTTGAAAACAAGACAGGTTTGCCCTCTAGACAACCGTGAA------ 293
                      ******************************************************      

consensus_8043#0      CTGCAAAAATATGGCCACTGAGTGGACCTGGTGATTGTTTTTTGACTTGTCAGTTACGGT 440
consensus_8043#1      ------------------------------------------------------------
                                                                                  

consensus_8043#0      TGTACCTGTTCAGATAATAAAATCATTAGACACAACGTTGTTCTTTTTTATTACTTTTGT 500
consensus_8043#1      ------------------------------------------------------------
                                                                                  

consensus_8043#0      AACGTTCTCTACC 513
consensus_8043#1      -------------