These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1633 fasta sequence [TATAATATATTAATAACCTAGTCAGTTACCGAATTGGCAAGTGATTAGTCAGAGAAATTAAATCATTACACATATTACACCAACCATATACACAGATTTCTGACAGAAAAGCAAAACCCGACAGGCATTGTTGAAAAACTTGCAAAGAGTGAGAAGGTAGACAGGTCTATAAACAAAGAAAATTTAATCTCCAAGAAAAAAATAATTGCCACTTCTTTTCTGTTCAACATCTTTGACCGAATTTAATTTGTTGATTCTTGGTCTAGCATTGGTTGGATCACGTCGAAATGTTATATCAAGTGATTGTAAAAATTTATTCATGCCAGTAACTAAATTTTGTGGTGTTGTTGCTGTAGCTTTAACACCAGGCTGACCGTCAAATACAACAACTCGATCGGCTAAATATGTTGCCATAATAAAATCATGTTCTACGATAAAAGCTGTCTTTTTAGCATGCAGTATAAATCGTTTAATAACTTTTGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATTCACCACCAGATAAGTTCATTACTTGCTGATCATAGAGTCGTTCCATTTGTAATGGTTTAAGCACATCTGTTGAAAATTGTGGATGTGTAAACGAATCACGAATTTTCTCCAAAAGTAGATTTTGAACGGTTTTCTCTGATTTTGGACTAATCTTTTGTGGTTTATATGATACATGTAAAACTGGACACTTTTGATCACCATCAGGTTTCAGATTGCCAGCCAGCATACGAATAAAAGTAGTTTTACCAGTACCATTCTCACCTAGCATTACAATAATTTCAGAATCAGTAAACGATCCAGCCTCCACTGTCAAATCGAATGAACCCAAATTTTTATACATAGTTGGATAATCGTAACGAGCTGTACGTTTTAATTCTTCTTCGTTACCGGTTTCGGACACCTTGAAAACCAGTGGTGTTTCTCGAAAACGCAAATTTTCCGTAGGGACCACACCATCCAAAAATATATTTATTCCTTCGCGGACGGAAAAAGGCATGGTGACTACCCCATAAGCACCTGGGACACCATAAAGACAGCATATGAAGTCAGACAAGTAATCCAAAACAGATAAATCATGCTCCACAACAATAACATAATTTGTACCCTCCAGTAGTTCACGTATAGCTATAGCTGTTTTTAAACGCTGCTTGACATCCAGGTAAGAACTAGGCTCATCAAACATGTATATATCAGCTTTTTGAACACAAACCATTGCACAAGCAAATCTTTGAAGTTCACCACCAGATAAATCGCCTACCATACGTTCAGTGACTACTTGAAGGTCAAGCATTTCCAAAACGTGATCTTGGTTGCCTCTATCATCCTTTCGATTAAGTAAGGTTTTAACCTCACCAGATACGATTTTAGGGATTTGATCAACATATTGTGGCTTAATAACAGCTCTCAAATTGTCCTCTAAGATTTTCGTGAAATAATTCTGTAGTTCTGAACCACGGAAATATGTTAATATTTCAGTCCAATCCGGTGGATTCTTGAACCGGCCAAGATTGGGTTTAAGTTTTCCGGCAAGTTCTTTAAGGCACTGG] [+] EMBL AI975226 [TATAATATATTAATAACCTAGTCAGTTACCGAATTGGCAAGTGATTAGTCAGAGAAATTAAATCATTACACATATTACACCAACCATATACACAGATTTCTGACAGAAAAGCAAAACCCGACAGGCATTGTTGAAAAACTTGCAAAGAGTGAGAAGGTAGACAGGTCTATAAACAAAGAAAATTTAATCTCCAAGAAAAAAATAATTGCCACTTCTTTTCTGTTCAACATCTTTGACCGAATTTAATTTGTTGATTCTTGGTCTAGCATTGGTTGGATCACGTCGAAATGTTATATCAAGTGATTGTAAAAATTTATTCATGCCAGTAACTAAATTTTGTGGTGTTGTTGCTGTAGCTTTAACACCAGGCTGACCGTCAAATACAACAACTCGATCGGCTAAATATGTTGCCATAATAAAATCATGTTCTACGATAAAAGCTGTCTTTTTAGCATGCAGTATAAATCGTTTAATAACTTTGGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGC ] [-] EMBL CD152578 [ AACAACTCGATCGGCTAAATATGTTGCCATAATAAAATCATGTTCTACGATAAAAGCTGTCTTTTTAGCATGCAGTATAATTCGTTTAATAACTTTTGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATTCACCACCAGATAAGTTCATTACTTGCTGATCATAGAGTCGTTCCATTTGTAATGGTTTAAGCACATCTGTTGAAAATTGTGGATGTGTAAACGAATCACGAATTTTCTCCAAAAGTAGATTTTGAACGG ] [+] EMBL CD129094 [ CTTTTTAGCATGCAGTATAAATCGTTTAATAACTTTTGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATTCACCACCAGATAAGTTCATTACTTGCTGATCATAGAGTCGTTCCATTTGTAATGGTTTAAGCACATCTGTTGAAAATTGTGGATGTGTAAACGAATCACGAATTTTCTCCAAAAGTAGATTTTGAACGGTTTTCTCTGATTTTGGACTAATCTTTTGTGGTTTATATGATACATGTAAAACTGGACACTTTTGATCACCATCAGGTTTCAGATTGCCAGCCAGCATACGAATAAAAGTAGTTTTACCAGTACCATTCTCACCTAGCATTACAATAATTTCAGAATCAGTAAACGATCCAGCCTCCACTGTCAAATCGAATGAACCCAAATTTTTATACATAGTTGGATAATCGTAACGAGCTGTACGTTTTAATTCTTCTTCGTTACCGGTTTCGGACACCTTGAAAACCAGTGGTGTTTCTCGAAAACGCAAATTTTCCGTAGGGACCACACCATCCAAAAATATATTTATTCCTTCGCGGACGGAAAAAGGCATGGTG ] [-] EMBL CD113035 [ ATAAAAGTAGTTTTACCAGTACCATTCTCACNTAGCATTACAATAATTTCAGAATCAGTAAACGATCCAGCCTCCACTGTCAAATCGAATGAACCCAAATTTTTATACATAGTTGGATAATCGTAACGAGCTGTACGTTTTAATTCTTCTTCGTTACCGGTTTCGGACACCTTGAAAACCAGTGGTGTTTCTCGAAAACGCAAATTTTCCGTAGGGACCACACCATCCAAAAATATATTTATTCCTTCGCGGACGGAAAAAGGCATGGTGACTACCCCATAAGCACCTGGGACACCATAAAGACAGCATATGAAGTCAGACAAGTAATCCAAAACAGATAAATCATGCTCCACAACAATAACATAATTTGTACCCTCCAGTAGTTCACGTATAGCTATAGCTGTTTTTAAACGCTGCTTGACATCCAGGTAAGAACTAGGCTCATCAAACATGTATATATCAGCTTTTTGAACACAAACCAT ] [-] EMBL CD162314 [ AGGCATGGTGACTACCCCATAAGCACCTGGGACACCATAAAGACAGCATATGAAGTCAGACAAGTAATCCAAAACAGATAAATCATGCTCCACAACAATAACATAATTTGTACCCTCCAGTAGTTCACGTATAGCTATAGCTGTTTTTAAACGCTGCTTGACATCCAGGTAAGAACTAGGCTCATCAAACATGTATATATCAGCTTTTTGAACACAAACCATTGCACAAGCAAATCTTTGAAGTTCACCACCAGATAAATCGCCTACCATACGTTCAGTGACTACTTGAAGGTCAAGCATTTCCAAAACGTGATCTTGGTTGCCTCTATCATCCTTTCGATTAAGTAAGGTTTTAACCTCACCAGATACGATTTTAGGGATTTGATCAACATATTGTGGCTTAATAACAGCTCTCAAATTGTCCTCTAAGATTTTCGTGAAATAATTCTGTAGTTCTGAACCACGGAAATATGTTAATATTTCAGTCCAATCCGGTGGATTCTTGAACCGGCCAAGATTGGGTTTAAGTTTTCCGGCAAGTTCTTTAAGGCACTGG] consensusID : consensus_8048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [CTATAAACAAAGAAGATTTAATCTCCAACAAAAAAATAATTGCCAGTAACTAAACTGTGTGGTGATGTAGCTGTAGCTCTGACACCAGGCTGCCCGTCAAATACAACACCTCGATCGGTTAAATATGATGCCATAATAAAATCATGTTCTCCGATAAAAGCTGTCTCTTTAGCATGCAGTATAAATCGTTTAATAACTTTCGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATT] [-] EMBL CD178932 [CTATAAACAAAGAAGATTTAATCTCCAACAAAAAAATAATTGCCAGTAACTAAACTGTGTGGTGATGTAGCTGTAGCTCTGACACCAGGCTGCCCGTCAAATACAACACCTCGATCGGTTAAATATGATGCCATAATAAAATCATGTTCTCCGATAAAAGCTGTCTCTTTAGCATGCAGTATAAATCGTTTAATAACTTTCGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGACATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8048#0 TATAATATATTAATAACCTAGTCAGTTACCGAATTGGCAAGTGATTAGTCAGAGAAATTA 60 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 AATCATTACACATATTACACCAACCATATACACAGATTTCTGACAGAAAAGCAAAACCCG 120 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 ACAGGCATTGTTGAAAAACTTGCAAAGAGTGAGAAGGTAGACAGGTCTATAAACAAAGAA 180 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 AATTTAATCTCCAAGAAAAAAATAATTGCCACTTCTTTTCTGTTCAACATCTTTGACCGA 240 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 ATTTAATTTGTTGATTCTTGGTCTAGCATTGGTTGGATCACGTCGAAATGTTATATCAAG 300 consensus_8048#1 -------------------------------------CTATAAACAAAGAAGAT-TTAAT 22 * *** ** * ** consensus_8048#0 TGATTGTAAAAATTTATTCATGCCAGTAACTAAATTTTGTGGTGTTGTTGCTGTAGCTTT 360 consensus_8048#1 CTCCAACAAAAAAATAAT--TGCCAGTAACTAAACTGTGTGGTGATGTAGCTGTAGCTCT 80 ***** ** * ************** * ******* *** ********* * consensus_8048#0 AACACCAGGCTGACCGTCAAATACAACAACTCGATCGGCTAAATATGTTGCCATAATAAA 420 consensus_8048#1 GACACCAGGCTGCCCGTCAAATACAACACCTCGATCGGTTAAATATGATGCCATAATAAA 140 *********** *************** ********* ******** ************ consensus_8048#0 ATCATGTTCTACGATAAAAGCTGTCTTTTTAGCATGCAGTATAAATCGTTTAATAACTTT 480 consensus_8048#1 ATCATGTTCTCCGATAAAAGCTGTCTCTTTAGCATGCAGTATAAATCGTTTAATAACTTT 200 ********** *************** ********************************* consensus_8048#0 TGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGAC 540 consensus_8048#1 CGCGGCATGTAAACGCTGTTCTGAATCTAAATAAGCTGACGGCTCATCAATTAAATAGAC 260 *********************************************************** consensus_8048#0 ATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATTCACCACCAGATAA 600 consensus_8048#1 ATCAGCTGGTTGGCCAAGGCACAATGTAATAGCCAATCGTTGTAATT------------- 307 *********************************************** consensus_8048#0 GTTCATTACTTGCTGATCATAGAGTCGTTCCATTTGTAATGGTTTAAGCACATCTGTTGA 660 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 AAATTGTGGATGTGTAAACGAATCACGAATTTTCTCCAAAAGTAGATTTTGAACGGTTTT 720 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 CTCTGATTTTGGACTAATCTTTTGTGGTTTATATGATACATGTAAAACTGGACACTTTTG 780 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 ATCACCATCAGGTTTCAGATTGCCAGCCAGCATACGAATAAAAGTAGTTTTACCAGTACC 840 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 ATTCTCACCTAGCATTACAATAATTTCAGAATCAGTAAACGATCCAGCCTCCACTGTCAA 900 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 ATCGAATGAACCCAAATTTTTATACATAGTTGGATAATCGTAACGAGCTGTACGTTTTAA 960 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 TTCTTCTTCGTTACCGGTTTCGGACACCTTGAAAACCAGTGGTGTTTCTCGAAAACGCAA 1020 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 ATTTTCCGTAGGGACCACACCATCCAAAAATATATTTATTCCTTCGCGGACGGAAAAAGG 1080 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 CATGGTGACTACCCCATAAGCACCTGGGACACCATAAAGACAGCATATGAAGTCAGACAA 1140 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 GTAATCCAAAACAGATAAATCATGCTCCACAACAATAACATAATTTGTACCCTCCAGTAG 1200 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 TTCACGTATAGCTATAGCTGTTTTTAAACGCTGCTTGACATCCAGGTAAGAACTAGGCTC 1260 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 ATCAAACATGTATATATCAGCTTTTTGAACACAAACCATTGCACAAGCAAATCTTTGAAG 1320 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 TTCACCACCAGATAAATCGCCTACCATACGTTCAGTGACTACTTGAAGGTCAAGCATTTC 1380 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 CAAAACGTGATCTTGGTTGCCTCTATCATCCTTTCGATTAAGTAAGGTTTTAACCTCACC 1440 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 AGATACGATTTTAGGGATTTGATCAACATATTGTGGCTTAATAACAGCTCTCAAATTGTC 1500 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 CTCTAAGATTTTCGTGAAATAATTCTGTAGTTCTGAACCACGGAAATATGTTAATATTTC 1560 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 AGTCCAATCCGGTGGATTCTTGAACCGGCCAAGATTGGGTTTAAGTTTTCCGGCAAGTTC 1620 consensus_8048#1 ------------------------------------------------------------ consensus_8048#0 TTTAAGGCACTGG 1633 consensus_8048#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||