These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8056#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 984 fasta sequence [CCAGAATTCGGCACGAGGCGGCACGAGGCTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTCTTATTAAAAATTGTGATTCTTTGCCGCATAATACTAGTATGCTCAGATCATTAGTGTTGTCTGTTGCTGGTGCAGGAGCAGAAGATAATAATATAGTTGAAGAAGCTAAAAGACTTTTTGAAGCTCATCGTTCAGGCGAGAAAGAATTGCCAAATGATTTACGTACAGAAATTTACACAATAGTTGTACGTCATGGCTCTACAGATGTAATTCAATATCTTATGGACAGATATAGTCATACGGACTCACCTGAAGAACGCCATCATATTCTCTTGGCTCTGGGCGCAGCACGTGAAACTAATTGTAATGGCCTTAATAATTCATCATCTTCTTCGTCGCCTTTATCGGATGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGGACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCGACATGGAAAAGTATCACTAATGAATGGAGTAGAATAATCGAATTGTATAGTGGTCAGTTTTTATTACCATCTCTCTTAGAAGGTGTTTTATCAGGATTCTCGACAAAATCTCATATATCAGCGATCAAAGAATTTTTCGATGCAAATCCAGTTTGTTGCACGCGTACTTTAGATCAAATTTATGAAACTTTATCTATCAACCAAACTGTTCTTGAACGTGACAGTCCATTAATTGCTAAAGCATTGAATACTTTGTGCAGTACTTTGAATTAAATGTACTACATATTTTTCAAGCCATAAATCGTGTATGAAACAAACTTATAATTTTCTGTTTACATTTCGAAAAAACATGTTTCTAAAAATAAACATA] [+] EMBL CD082799 [CCAGAATTCGGCACGAGGCGGCACGAGGCTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTCTTATTAAAAATTGTGATTCTTTGCCGCATAATACTAGTATGCTCAGATCATTAGTGTTGTCTGTTGCTGGTGCAGGAGCAGAAGATAATAATATAGTTGAAGAAGCTAAAAGACTTTTTGAAGCTCATCGTTCAGGCGAGAAAGAATTGCCAAATGATTTACGTACAGAAATTTACACAATAGTTGTACGTCATGGCTCTACAGATGTAATTCAATATCTTATGGACAGATATAGTCATACGGACTCACCTGAAGAACGCCATCATATTCTCTTGGCTCTGGGCGCAGCACGTGAAACTAATTGTAATGGCCTTAATAATTCATCATCTTCTTCGTCGCCTTTATCGGATGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGGACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCGACATGGAAAAGTATCACTAATGAATGGAGTAGA ] [+] EMBL CD136908 [ CTCTGGGCGCAGCACGTGAAACTAATTGTAATGGCCTTAATAATTCATCATCTTCTTCGTCGCCTTTATCGGATGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGGACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCAACATGGAAAAGTATCACTAATGAATGGAGTAGAATAATCGAATTGTATAGTGGTCAGTTTTTATTACCATCTCTCTTAGAAGGTGTTTTATCAGGATTCTCGACAAAATCTCATATATCAGCGATCAAAGAATTTTTCGATGCAAATCCAGTTTGTTGCACGCGTACTTTAGATCAAATTTATGAAACTTTATCTATCAACCAAACTGTTCTTGAACGTGACAGTCCATTAATTGCTAAAGCATTGAATACTTTGTGCAGTACTTTGAATTAAATGTACTACATATTTTTCAAGCC ] [-] EMBL CD076391 [ TCATCATCTTCTTCGTCGCCTTTATCGGATGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGGACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCGACATGGAAAAGTATCACTAATGAATGGAGTAGAATAATCGAATTGTATAGTGGTCAGTTTTTATTACCATCTCTCTTAGAAGGTGTTTTATCAGGATTCTCGACAAAATCTCATATATCAGCGATCAAAGAATTTTTCGATGCAAATCCAGTTTGTTGCACGCGTACTTTAGATCAAATTTATGAAACTTTATCTATCAACCAAACTGTTCTTGAACGTGACAGTCCATTAATTGCTAAAGCATTGAATACTTTGTGCAGTACTTTGAATTAAATGTACTACATATTTTTCAAGCCATAAATCGTGTATGAAACAAACTTATAATTTTCTGTTTACATTTCGAAAAAACATGTTTCTAAAAATAAACATA] consensusID : consensus_8056#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [GTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACAGTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTAAGTCATCAGAAAGAAATTTTTCTCTGTATTGAGATTTGCGTTTATTACTGTAATCGCTTTAACTATTATTTTGTGTGATAATCAGAAGGTTTTGCACACATAATATCAAGCTGTTTGATGACAATCATTCCTATAAGAGTGGAGAATACAATGTGATTAAATTTCAGATATGTGAAAGTAATTTCAGGTTCGTTTTAGGACACCTAAACATTTTTTGTTAAAATATGTCACTAGGTTTTCCAATATTTGCCGAAAATAAGAAGAGCGGAGTCCAACTACGCTTTATTTCGATAAACAGTAGTCAACTAGA] [-] EMBL CD196373 [GTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACAGTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTAAGTCATCAGAAAGAAATTTTTCTCTGTATTGAGATTTGCGTTTATTACTGTAATCGCTTTAACTATTATTTTGTGTGATAATCAGAAGGTTTTGCACACATAATATCAAGCTGTTTGATGACAATCATTCCTATAAGAGTGGAGAATACAATGTGATTAAATTTCAGATATGTGAAAGTAATTTCAGGTTCGTTTTAGGACACCTAAACATTTTTTGTTAAAATATGTCACTAGGTTTTCCAATATTTGCCGAAAATAAGAAGAGCGGAGTCCAACTACGCTTTATTTCGATAAACAGTAGTCAACTAGA] consensusID : consensus_8056#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 308 fasta sequence [TAGTCGCTTCGTATTCATTAATGATGGATTCGCATTAGCTAAGGCTGGTTACATTAGTGTTTACAGATTGGCTTATACTTTTGCCTACATTAATGGAAAACGAAAATGATTACTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTCTTATAAAAAATTGTGATTCTTTGCCGCATAATACTAGTATGCTCAGATCATTAGTGTTGTCT] [+] EMBL CD189553 [TAGTCGCTTCGTATTCATTAATGATGGATTCGCATTAGCTAAGGCTGGTTACATTAGTGTTTACAGATTGGCTTATACTTTTGCCTACATTAATGGAAAACGAAAATGATTACTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAATTGGGTCTTATAAAAAATTGTGATTCTTTGCCGCATAATACTAGTATGCTCAGATCATTAGTGTTGTCT] [+] EMBL CD164137 [ acGATTGGCTTATACTTTTGCCTACATTAATGGAAAACGAAAATGATTACTCTGTGTGGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACATTCCTTCCTCACTCTATAATAGTTTCCTATTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8056#0 ------------------------------------------------------------ consensus_8056#2 TAGTCGCTTCGTATTCATTAATGATGGATTCGCATTAGCTAAGGCTGGTTACATTAGTGT 60 consensus_8056#1 ------------------------------------------------------------ consensus_8056#0 -----------------------CCAGAATTCGGCACGAGGCGGCACGAG-GCTCTGTGT 36 consensus_8056#2 TTACAGATTGGCTTATACTTTTGCCTACATTAATGGAAAACGAAAATGATTACTCTGTGT 120 consensus_8056#1 ------------------------------------------------------------ consensus_8056#0 GGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACA 96 consensus_8056#2 GGCGTGGTGTTCTAGATGGTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACA 180 consensus_8056#1 ------------------GTCTTAATACTTATATCAAGAGAATAATACAATCGAGTGACA 42 ****************************************** consensus_8056#0 TTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAAT 156 consensus_8056#2 TTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAAT 240 consensus_8056#1 GTCCTTCCTCACTCTATAATAGTTTCCTATTAAAATTAGTATATCCAGTAATAAATAAAT 102 *********************************************************** consensus_8056#0 TGGGTC--TTATTAAAAATTGTGATTCTTTGCCGCAT-AATACTAGTATGC-TCAGATCA 212 consensus_8056#2 TGGGTC--TTATAAAAAATTGTGATTCTTTGCCGCAT-AATACTAGTATGC-TCAGATCA 296 consensus_8056#1 TGGGTAAGTCATCAGAAA--GAAATTTTTCTCTGTATTGAGATTTGCGTTTATTACTGTA 160 ***** * ** * *** * *** ** * * ** * * * * * * * * consensus_8056#0 TTAGTGTTGTCTGTTGCTGGTGCAGGAGCAGAAGATAATAATATAGTTGAAGAAGCTAAA 272 consensus_8056#2 TTAGTGTTGTCT------------------------------------------------ 308 consensus_8056#1 ATCGCTTTAACTATTATTT-TGTGTGATAATCAGAAGGTTTTGCA-CACATAATATCAAG 218 * * ** ** consensus_8056#0 AGACTTTTTGAAGCTCATCGTTCAGGCGAGAAAGAATTGCCAAATGATTTACGTACAGAA 332 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 CTGTTTGATGACAATCATTCCT-ATAAGAGTGGAGAATACAATGTGATTAAATTTCAGAT 277 consensus_8056#0 ATTTACACAATAGTTGTACGTCATGGCTCTACAGATGTAATTCAATATCTTATGGACAGA 392 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 ATGTG-AAAGTAATT-----TCAGGTTCGTTTTAGGACACCTAAACATTTTTTGTTAAAA 331 consensus_8056#0 TATAGTCATACGGACTCACCTGAAGAACGCCATCATATTCTCTTGGCTCTGGGCGCAGCA 452 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 TATGTCACTAGGTTTTCCAATATTTGCCGAAAATAAGAAGAGCGGAGTCCAACTACGCTT 391 consensus_8056#0 CGTGA-AACTAATTGTAATGGCCTTAATAATTCATCATCTTCTTCGTCGCCTTTATCGGA 511 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 TATTTCGATAAACAGTAGTCAACTAGA--------------------------------- 418 consensus_8056#0 TGTTCTACATTTTTGTTTGAATCCAAACGGCCCAATAAAAGATCAAGATAGAATTCATGG 571 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 ------------------------------------------------------------ consensus_8056#0 ACTGGTCGCTTGTTCATCGTGGTCTATTCCAGCTAGACTAGCGACATGGAAAAGTATCAC 631 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 ------------------------------------------------------------ consensus_8056#0 TAATGAATGGAGTAGAATAATCGAATTGTATAGTGGTCAGTTTTTATTACCATCTCTCTT 691 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 ------------------------------------------------------------ consensus_8056#0 AGAAGGTGTTTTATCAGGATTCTCGACAAAATCTCATATATCAGCGATCAAAGAATTTTT 751 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 ------------------------------------------------------------ consensus_8056#0 CGATGCAAATCCAGTTTGTTGCACGCGTACTTTAGATCAAATTTATGAAACTTTATCTAT 811 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 ------------------------------------------------------------ consensus_8056#0 CAACCAAACTGTTCTTGAACGTGACAGTCCATTAATTGCTAAAGCATTGAATACTTTGTG 871 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 ------------------------------------------------------------ consensus_8056#0 CAGTACTTTGAATTAAATGTACTACATATTTTTCAAGCCATAAATCGTGTATGAAACAAA 931 consensus_8056#2 ------------------------------------------------------------ consensus_8056#1 ------------------------------------------------------------ consensus_8056#0 CTTATAATTTTCTGTTTACATTTCGAAAAAACATGTTTCTAAAAATAAACATA 984 consensus_8056#2 ----------------------------------------------------- consensus_8056#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||