These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence [ATTTCTCTCAAAACATCAGTTTGTGCGAGAGAGTAGGTATACTTTGAACCCGACTGCTGTAAGCACCCAGGCTAAAATAATCTATTGGAAGTGTCGCCCAAACTAATGGGCATGAATAACTTAATTGTCTTCAGTGTGAATGAGTTTGATATATTATAACACTGAAAACATTTACTCTACAAGTGTGGAATCACTTGAAAAATGTGATGGTCCTATGTATAAAACTAACAAAATCTATTAGTCAATCAATAAAATAAATGAGGTGACACCAGTTATCGCCATTTAATATTTGATTAACTCACTGTTACATCTAATAATGAAAATTTGATTCTTATAAAGTGTAACACTGAGATGTGACACAATATGGAGCAATCGACTTTAATGACATAATTAACTAGAGCAATACAGGCAATCAATAATATATAAATATTATATCATACACTTTAATGTAGCTGACATTAGAAAGTGCATTGGCCTCATGACCTCCGAAGGAATTCGGCTTTCATCATGAGGCGTCATATTTATTCCTTCAACTCCCAGGGCAGAGTTTAAATGGTTTGAATTATTTTTTCTGGTTAGCTTTTTTTTAGTGAGTTGGTTTTCTACGGGATGGGGTTTCTAACCTCATGCCCAGTCCCCATCCTTTATCACGGCTTGGGATTGGCAGTA] [+] EMBL CD084453 [ATTTCTCTCAAAACATCAGTTTGTGCGAGAGAGTAGGTATACTTTGAACCCGACTGCTGTAAGCACCCAGGCTAAAATAATCTATTGGAAGTGTCGCCCAAACTAATGGGCATGAATAACTTAATTGTCTTCAGTGTGAATGAGTTTGATATATTATAACACTGAAAACATTTACTCTACAAGTGTGGAATCACTTGAAAAATGTGATGGTCCTATGTATAAAACTAACAAAATCTATTAGTCAATCAATAAAATAAATGAGGTGACACCAGTTATCGCCATTTAATATTTGATTAACTCACTGTTACATCTAATAATGAAAATTTGATT ] [-] EMBL CD084482 [ CAGTGTGAATGAGTTTGATATATTATAACACTGAAAACATTTACTCTACAAGTGTGGAATCACTTGAAAAATGTGATGGTCCTATGTATAAAACTAACAAAATCTATTAGTCAATCAATAAAATAAATGAGGTGACACCAGTTATCGCCATTTAATATTTGATTAACTCACTGTTACATCTAATAATGATAATTTGATTCTTATAAAGTGTAACACTGAGATGTGACACAATATGGAGCAATCGACTTTAATGACATAATTAACTAGAGCAATACAGGCAATCAATAATATATAAATATTATATCATACACTTTAATGTAGCTGACATTAGAAAGTGCATTGGCCTCATGACCTCCGAAGGAATTCGGCTTTCATCATGAGGCGTCATATTTATTCCTTCAACTCCCAGGGCAGAGTTTAAATGGTTTGAATTATTTTTTCTGGTTAGCTTTTTTTTAGTGAGTTGGTTTTCTACGGGATGGGGTTTCTAACCTCATGCCCAGTCCCCATCCTTTATCACGGCTTGGGATTGGCAGTA] consensusID : consensus_8068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [ACATCATCAATGTAATAGCAACATAATCATAATAAATGCACAATATTCATATAAGGATAGAGATATAACACATTATAAGGTTAAATAAATAAGTAGTCTATAATGATGAATCAGTAGTTTATCATTAAACTTCAATTAAAACCGATTGATTGACATAGCGCAATAATGAAGGTTATTCAATCTTCAAGAATATAGATTTAAATAGAGGTCAATTCTTTACTTGTTTGAATGAAGCACAAATGAATTCATTACTTCAAATGATAATAATAATAATAATAATAATAATAGTAGCTTTAGGAAGCTCTTTGAAGCTCACTGAATTCATCATGAGGTCCCATAGACAAAATCTATGAGGTGATGTGATTCATTTTACAATCTTTTGTTTTGTTGTTGTTGTTTAAATGTTTCATCCAATAGTCATAGTTAAAGAGCTGGAACATATACTTCACACTATATGATAGGATAGGACATACATTAAGGAACTCATCAAACTGCATCACGAAGCAAGCCTTCACTTGGAATTCGGAAGGGGAAACGGAAAAGAGGAAAGTCAAAGAACGCATTACATCCGGAAATAGAAGTAGATATGAAAAGGATGAATGTTAACTCGAAAGAAGTGGAAAGGATTGCCCAG] [+] EMBL CD074001 [ACATCATCAATGTAATAGCAACATAATCATAATAAATGCACAATATTCATATAAGGATAGAGATATAACACATTATAAGGTTAAATAAATAAGTAGTCTATAATGATGAATCAGTAGTTTATCATTAAACTTCAATTAAAACCGATTGATTGACATAGCGCAATAATGAAGGTTATTCAATCTTCAAGAATATAGATTTAAATAGAGGTCAATTCTTTACTTGTTTGAATGAAGCACAAATGAATTCATTACTTCAAATGATAATAATAATAATAATAATAATAATAGTAGCTTTAGGAAGCTCTTTGAAGCTCACTGAATTCATCATGAGGTCCCATAGACAAAATCTATGAGGTGATGTGATTCATTTTACAATCTTTTGTTTTGTTGTTGTTGTTTAAATGTTTCATCCAATAGTCATAGTTAAAGAGCTGGAACATATACTTCACACTATATGATAGGATAGGACATACATTAAGGAACTCATCAAACTGCATCACGAAGCAAGCCTTCACTTGGAATTCGGAAGGGGAAACGGAAAAGAGGAAAGTCAAAGAACGCATTACATCCGGAAATAGAAGTAGATATGAAAAGGATGAATGTTAACTCGAAAGAAGTGGAAAGGATTGCCCAG] consensusID : consensus_8068#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TTTCATAAACTAATGAACTGGGCCGACAGGAATTTCAGCCTTCGTTGTGATATGGATCAGGATGCGCAACGCTGGATTCGCCTGTGATGACGCCCAAGAGCAGTGTTCCTTCCATCGTTGGACGACCTCGACATCAAGGTGTGATGGCTCGCATGGGTCAGAAAGACAGCTACGTCGGTGATGAAGCACATCGAAACGTGGTATTCTCACACTGAAATCCCCATCGACACGGTATTGTGACGAACTGGGATGACATGGAGAAGATCTGGCATCACACATTCCACAATGAATTGCGTGTGCTACAAGAAGAACACCTGTCTGTTGACGAAGCTCATTGATCGAAGCCATCGTGAGAGATGACCAATCATGTTGAGCATCACAACCAGCATGTACGTCGGCATCAAGCTGTACTGTCCTGTAGATCGGGTCTAAAATGGTATTGTGTTGGACCTGGTGATGGAGTACACACCGGACGATCTAGAGGTTATCGCCACCATGTATTCGGGGTGGATTGGTGTCGTGATTAACGATCTGAGAGGTCTGAGGACGGTTAATTTCCAAAAGGGGGAGAATCGCGGAAAAAGGAACTGGTTTTGGTCTA] [+] EMBL AI639549 [TTTCATAAACTAATGAACTGGGCCGACAGGAATTTCAGCCTTCGTTGTGATATGGATCAGGATGCGCAACGCTGGATTCGCCTGTGATGACGCCCAAGAGCAGTGTTCCTTCCATCGTTGGACGACCTCGACATCAAGGTGTGATGGCTCGCATGGGTCAGAAAGACAGCTACGTCGGTGATGAAGCACATCGAAACGTGGTATTCTCACACTGAAATCCCCATCGACACGGTATTGTGACGAACTGGGATGACATGGAGAAGATCTGGCATCACACATTCCACAATGAATTGCGTGTGCTACAAGAAGAACACCTGTCTGTTGACGAAGCTCATTGATCGAAGCCATCGTGAGAGATGACCAATCATGTTGAGCATCACAACCAGCATGTACGTCGGCATCAAGCTGTACTGTCCTGTAGATCGGGTCTAAAATGGTATTGTGTTGGACCTGGTGATGGAGTACACACCGGACGATCTAGAGGTTATCGCCACCATGTATTCGGGGTGGATTGGTGTCGTGATTAACGATCTGAGAGGTCTGAGGACGGTTAATTTCCAAAAGGGGGAGAATCGCGGAAAAAGGAACTGGTTTTGGTCTA] consensusID : consensus_8068#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [CAGAGAAAGTCAATACACAAGCTGAATACACTACAGCAAAAAAGCAAGTGACGATGAGCATCAGAATCGACGAGCAGAAATACGCAGAAGAGCTAGCAACGACGGTGGAAAAAGCTGTAAGAGAAGGAAACATGAAACAACTATATGACACGACGAAGAAACTAGCAGGGAAATATGGTAAATCAGAGAGACCAGTCAAGGACAAAGAGGGCAAGCCAATCTCTGAGACTCAAGAACCGGAGCACAAATGGGTAGAATACTTTGAGGAACCCTTGAATTGATCATCTCCATTGAATTCACCGGACATTTGAACTGCAGACATAGGCCTTCCTATAGCTGTCACCCAACCAACGACAGAAGAAATCAGGATGACCATCAGATAAAACAAGTGTGGGAAGGCGGTAGGAACTGACAATATACCAGCCGAAGCACTGGAATCAGACAGAAATAACTATAAACATGCTCCACGCTCTATACAGG] [+] EMBL CD190367 [CAGAGAAAGTCAATACACAAGCTGAATACACTACAGCAAAAAAGCAAGTGACGATGAGCATCAGAATCGACGAGCAGAAATACGCAGAAGAGCTAGCAACGACGGTGGAAAAAGCTGTAAGAGAAGGAAACATGAAACAACTATATGACACGACGAAGAAACTAGCAGGGAAATATGGTAAATCAGAGAGACCAGTCAAGGACAAAGAGGGCAAGCCAATCTCTGAGACTCAAGAACCGGAGCACAAATGGGTAGAATACTTTGAGGAACCCTTGAATTGATCATCTCCATTGAATTCACCGGACATTTGAACTGCAGACATAGGCCTTCCTATAGCTGTCACCCAACCAACGACAGAAGAAATCAGGATGACCATCAGATAAAACAAGTGTGGGAAGGCGGTAGGAACTGACAATATACCAGCCGAAGCACTGGAATCAGACAGAAATAACTATAAACATGCTCCACGCTCTATACAGG] consensusID : consensus_8068#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [TTACTCTGAGAAATAGAAGCAGATATGAAAAGGATGAATGTTAACTGGAAAGAATTGGAAAGGAAGGCTCAGGACAGAGTTGGATGAAGAATTCTAATGAGCGGCCTATGCTCCTTGACGAGGGGTAATAGGCGTAAGTAATTAAGGAAGTAAAATCGCATTCATAGATGAATATATTTAAGTAGCCTGCCAGCTATGACTTTTTCGACTATCAAATTACGTTGACGGCATTGCATAGCTATTTTGAATGAGCAAGATTATGTTGGGCGTTTTTAGC] [+] EMBL CD177775 [TTACTCTGAGAAATAGAAGCAGATATGAAAAGGATGAATGTTAACTGGAAAGAATTGGAAAGGAAGGCTCAGGACAGAGTTGGATGAAGAATTCTAATGAGCGGCCTATGCTCCTTGACGAGGGGTAATAGGCGTAAGTAATTAAGGAAGTAAAATCGCATTCATAGATGAATATATTTAAGTAGCCTGCCAGCTATGACTTTTTCGACTATCAAATTACGTTGACGGCATTGCATAGCTATTTTGAATGAGCAAGATTATGTTGGGCGTTTTTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8068#1 ---------------------------ACATCATCAATGTA-ATAGCAACATAATCATA- 31 consensus_8068#4 -----------------------------TTACTCTGAGAA-ATAGAAGCAGATATGAA- 29 consensus_8068#3 -------------CAGAGAAAGTCAATACACAAGCTGAATACACTACAGCAAAAAAGCA- 46 consensus_8068#0 ATTTCTCTCAAAACATCAGTTTGTGCGAGAGAGTAGGTATACTTTGAACCCGACTGCTGT 60 consensus_8068#2 -----------------TTTCATAAACTAATGAACTGGGCCGACAGGAATTTCAGCCTT- 42 * consensus_8068#1 ATAAATGCACAATATTCATATAAGGATAGAGATATAA-CACATTATAAGGTTA-AATAAA 89 consensus_8068#4 AAGGATGAATGTTAACTGGAAAGAATTGGAAAGGAAGGCTCAGGACAGAGTTG-GATGAA 88 consensus_8068#3 AGTGACGATGAGCATCAGAATCGACGAGCAGAAATACGCAGAAGAGCTAGCAACGACGGT 106 consensus_8068#0 AAGCACCCAGGCTAAAATAATCTATTGGAAGTGTCGCCCAAACTAATGGGCATGAATAAC 120 consensus_8068#2 CGTTGTGATATGGATCAGGATGCGCAACGCTGGATTCGCCTGTGATGACGCCC-AAGAGC 101 * * * * * * consensus_8068#1 TAAGTAGTCTATAATGATGAATCAGTAGTTTATCATTAAACTTCAATTAAAACCGATTGA 149 consensus_8068#4 GAA-----TTCTAATGA-------GCGGCCTAT------GCTCC--TTGACGAGGGGTAA 128 consensus_8068#3 GGAAAAAGCTGTAAGAG------AAGGAAACATGAAACAACTATATGACACGACGAAGAA 160 consensus_8068#0 TTAATTGTCTTCAGTGT-GAATGAGTTTGATATATTATAACACTGAAAACATTTACTCTA 179 consensus_8068#2 AGTGTTCCTTCCATCGTTGGACGACCTCGACATCAAGGTGTGATGGCTCGCATGGGTCAG 161 * * ** consensus_8068#1 TTGACATAGC-------GCAATAATGAAGGTTATTCAA---TCTTCA-AGAAT--ATAGA 196 consensus_8068#4 TAGGCGTAA--------GTAATTAAGGAAGTAAAATCG---CATTCA-TAGATGAATATA 176 consensus_8068#3 ACTA-GCAGG-------GAAATATGGTAAATCAGAGAGAC-CAGTCA-AGGACAAAGAGG 210 consensus_8068#0 CAAGTGTGGA-------ATCACTTGAAAAATGTGATGGTCCTATGTATAAAACTAACAAA 232 consensus_8068#2 AAAG-ACAGCTACGTCGGTGATGAAGCACATCGAAACGTGGTATTCT-CACACTGAAATC 219 * * * * * * consensus_8068#1 TTTAAATAGAGGTCAATTCT--TTACTTGTTTGAATGAAGCACAAATGAATTCATTACTT 254 consensus_8068#4 TTTAAGTAGCCTGCCAGCTA--TGACTTTTTCGACT--ATCA-AATTACGTTGACGGCAT 231 consensus_8068#3 GCAAGCCAATCTCTGAGACT--CAAG------AACCGGAGCACAAATGGGTAGAATACTT 262 consensus_8068#0 ATCTATTAGTCAATCAATAAAATAAATGAGGTGACACCAGTT-ATCGCCATTTAATATTT 291 consensus_8068#2 CCCATCGACACGGTATTGTGACGAACTGGGATGACATGGAGAAGATCTGGCATCACACAT 279 * * * * consensus_8068#1 CAAATGAT-AATAAT-AATA--ATAATAATAATAATAGTAGCTTTAGGAAGCTCTTTGAA 310 consensus_8068#4 TGCATAGC-TATTTTGAATG--AGCAAGATTATGTTGGGCGTTTTTAGC----------- 277 consensus_8068#3 TGAGGAAC-CCTTGA-ATTG--ATCAT--CTCCATTGAATTCACCGGACATTTGAACTGC 316 consensus_8068#0 GATTAACT-CACTGTTACAT--CTAATAATGAAAATTTGATTCTTATAAAGTGTAAC-AC 347 consensus_8068#2 TCCACAATGAATTGCGTGTGCTACAAGAAGAACACCTGTCTGTTGACGAAGCTCATTGAT 339 * consensus_8068#1 GCTCACTGAATTCATCATGAGGTCCCATAGACAAAATCTATGAGGTGATGTGATTCATTT 370 consensus_8068#4 ------------------------------------------------------------ consensus_8068#3 AGACATAGGCCTTCCTATAGCTGTCACCCAACCAACGACAGAAGAAATCAGGATGACCAT 376 consensus_8068#0 TGAGATGTGACACAATATGGAGCAATCGACTTTAATGACATAATTAACTAGAGCAATACA 407 consensus_8068#2 CGAAGCCATCGTGAGAGATGACCAATCATGTTGAGCATCACAACCAGCATGTACGTCGGC 399 consensus_8068#1 TACAATCTTTTGT--TTTGTTGTTGTTGTTTAAATGTTTCATCCAATAGTCATAGTTAAA 428 consensus_8068#4 ------------------------------------------------------------ consensus_8068#3 CAGATAAAACAAG--TGTGGGAAGGCGGTAGGAACTGACAATATACCAGCCGAAGCACTG 434 consensus_8068#0 GGCAATCAATAATA-TATAAATATTATATCATACACTTTAATGTAGCTGACATTAGAAAG 466 consensus_8068#2 ATCAAGCTGTACTGTCCTGTAGATCGGGTCTAAAATGGTATTGTGTTGGACCTGGTGATG 459 consensus_8068#1 GAGC-TGGAACATATACTTCACACTATATGATAGGATAGGACATACATTAAGGAACTCAT 487 consensus_8068#4 ------------------------------------------------------------ consensus_8068#3 GAAT-CAGACAGAAATAACTATAAACATGCTCCACGCTCTATACAGG------------- 480 consensus_8068#0 TGCA-TTGGCCTCATGACCTCCGAAGGAATTCGGCTTTCATCATGAGGCGTCATATTTAT 525 consensus_8068#2 GAGTACACACCGGACGATCTAGAGGTTATCGCCACCATGTATTCGGGGTGGATTGGTGTC 519 consensus_8068#1 CAAACTGCATCACGAAGCAAGCCTTCACTTGGAATTCGGAAGGGGAAACGGAAAAGAGGA 547 consensus_8068#4 ------------------------------------------------------------ consensus_8068#3 ------------------------------------------------------------ consensus_8068#0 TCCTTCAACTCCCAGGGCAGAGTTTAAATGGTTTGAATTATTTTTTCTGGTTAGCTTTTT 585 consensus_8068#2 GTGATTAACGATCTGAGAGGTCTGAGGACGGTTAATTTCCAAAAGGGGGAGAATCGCGGA 579 consensus_8068#1 AAGTCAAAGAACGCATTACATCCGGAAATAGAAGTAGATATGAAAAGGATGAATGTTAAC 607 consensus_8068#4 ------------------------------------------------------------ consensus_8068#3 ------------------------------------------------------------ consensus_8068#0 TTTAGTGAGTTGGTTTTCTACGGGATGGGGTTTCTAACCTCATGCCCAGTCCCCATCCTT 645 consensus_8068#2 AAAAGGAACTGGTTTTGGTCTA-------------------------------------- 601 consensus_8068#1 TCGAAAGAAGTGGAAAGGATTGCCCAG 634 consensus_8068#4 --------------------------- consensus_8068#3 --------------------------- consensus_8068#0 TATCACGGCTTGGGATTGGCAGTA--- 669 consensus_8068#2 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||