These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1004 fasta sequence [CCTTCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTA-TTTCTCTGC-AAGTTTTAATTNGTTG-TGCTGTGA-TAGAAAAAT-ATAGTTAA] [+] EMBL CD081618 [CCTTCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATGCTGTATTGAGTGT ATTACAAATCNACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATACCAAGTA TTTCTCTGC AAGTTTTAATTNGTTG TGCTGTGA TAGAAAAAT ATAGTT ] [-] EMBL CD074088 [ AAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATTCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGT ACGTTGTCGTGATAACAAGTA T ] [-] EMBL CD075441 [ AACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTATTTTCTCTGCAAAGTTTTAATT GTTGTTGCTGTGATTAGAAAAATAATAGTTAA] consensusID : consensus_8069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 718 fasta sequence [TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG] [+] EMBL CD083451 [TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCT ] [+] EMBL CD077717 [ cggtccgagGTGATTTGTTGCATGAATACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGGTTTATTTTTGAAGAGGAAACTTCTAA ] [+] EMBL CD079890 [ attcgGCACGAGGACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8069#0 ---------------------------------------------------------CCT 3 consensus_8069#1 TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTC 60 consensus_8069#0 TCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATTGAA 63 consensus_8069#1 CCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAA 120 * * * * * * * ************************************* consensus_8069#0 CAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCAT 123 consensus_8069#1 CAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCAT 180 ************************************************************ consensus_8069#0 GATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGT 183 consensus_8069#1 GATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGT 240 ************************************************************ consensus_8069#0 TTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAA 243 consensus_8069#1 TTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAA 300 ************************************************************ consensus_8069#0 TTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATA 303 consensus_8069#1 TTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATA 360 ************************************************************ consensus_8069#0 AAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCT 363 consensus_8069#1 AAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCT 420 ************************************************************ consensus_8069#0 GATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGC 423 consensus_8069#1 GATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGC 480 ************************************************************ consensus_8069#0 AAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTA 483 consensus_8069#1 AAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTA 540 *************** **** *************************************** consensus_8069#0 ATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGT 543 consensus_8069#1 ATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGT 600 ************************************************************ consensus_8069#0 GAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATG 603 consensus_8069#1 GAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATG 660 ************************************************************ consensus_8069#0 AGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAA 663 consensus_8069#1 AGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG-- 718 ************************************************ ********* consensus_8069#0 GCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGT 723 consensus_8069#1 ------------------------------------------------------------ consensus_8069#0 TATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTG 783 consensus_8069#1 ------------------------------------------------------------ consensus_8069#0 CATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTAC 843 consensus_8069#1 ------------------------------------------------------------ consensus_8069#0 TACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCAC 903 consensus_8069#1 ------------------------------------------------------------ consensus_8069#0 TCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTATTTCTCTGC 963 consensus_8069#1 ------------------------------------------------------------ consensus_8069#0 AAGTTTTAATTNGTTGTGCTGTGATAGAAAAATATAGTTAA 1004 consensus_8069#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||