These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1175 fasta sequence [CACCGGCATAAACAAGTTTATACACAGACTGAAGCTAATTCATAAGTTACTTGTATTAGTACATTGTGCCGTCAAATAATATTAACTAAAACCCGAAAGGTGATATCAAAGTAAATGGCACGAAATAAACATTCTCACTGTTTTCTGCTTATGACTTGCCTAGTTGATGCGATGTATCAACAAGTATTTAAAACAAAGAGCCTACAAACTATCGATTAATAACTCATAGTACGGTGTGATGAATCAAAGCAGTTTATGGATTAATGGGTCAGTATGTGCTCATTTACCAGGAGATTATCAAATAAATTACACCTGCTTTTGCTGTCCTATCAGGATGAAGATTTTTTAGATAGACATCGCTTCACCTGGTGATAAATTCAGTGCGATATTGTATAGAAAACGTTTACCAGTTCCGTATCAACTACATACTTTCAAAGTATCGTTTTAGAAATTATTGTCTCTCTGTGGTTCCCATCATTTGACTGTTACCAGCCCATTACATAAGCAGATAACCGAAAATTGATATCTTGGCTTTTGTTGTTGTCATTACGCTGTTAAAATGTATGAACCCGTGTCTAGTAATATGCTTACTTAAATTATATTGATAAGAAAGCTTTCCTAAAATGATGTGGTAAACAACCGTTCCAATTGTTTGAATTCTATTTTTTTTTATTAAGTTCTCATGAATTTATCATAATTTCCAGCTGGAACGACATATAATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGGGTGATGGTCTCTTAGATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGGGTAATGAAGAACAAGTGGAAAATATTTCTCAACTGGATCAGGANAATGAGGATCAAAATAATAAATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCTTACAGTTTATAGAAAATGCATCGTGTATGCCGCTTCATCCTGTCCAGTCATCAACTGTTTCTGTCGACACTTTTTGAATTGCTTGATAACGTTACTTTCAGATTGCATTTTAAACAACTTTATATCAAATTATCAACGTCTATAGGATATTGCTGTTGATGTCAACTCGCTATCTAGTATCGTCTTTTATGCTACAGATTAATCGTTTAACTTTTTACGTACACTGTTCATGACTATG] [-] EMBL CD202406 [CACCGGCATAAACAAGTTTATACACAGACTGAAGCTAATTCATAAGTTACTTGTATTAGTACATTGTGCCGTCAAATAATATTAACTAAAACCCGAAAGGTGATATCAAAGTAAATGGCACGAAATAAACATTCTCACTGTTTTCTGCTTATGACTTGCCTAGTTGATGCGATGTATCAACAAGTATTTAAAACAAAGAGCCTACAAACTATCGATTAATAACTCATAGTACGGTGTGATGAATCAAAGCAGTTTATGGATTAATGGGTCAGTATGTGCTCATTTACCAGGAGATTATCAAATAAATTACACCTGCTTTTGCTGTCCTATCAGGATGAAGATTTTTTAGATAGACATCGCTTCACCTGGTGATAAATTCAGTGCGATATTGTATAGAAAACGTTTACCAGTT ] [+] EMBL CD079998 [ TGGGTCAGTATGTACTCATTTACCAGGAGATTATCAAATAAATTACAACTGCTTTTGCTGTCCTATCAGGATGAAGATTTTCTAGCTAGACATCGCTTCACCTGGTGATAAATTCAGTACGATATTGAATAGAAAACGTTTACCAGTTCCGTATCAACTACATACTTTCAAAGTATCGTTTTAGAAATTATTGTCTCTCTGTGGTTCCCATCATTTGACTGTTACCAGCCCATTACATAAGCAGATAACCGAAAATTGATATCTTGGCTTTTGTTGTTGTCATTACGCTGTTAAAATGTATGAACCCGTGTCTAGTAATATGCTTACTTAAATTATATTGATAAGAAAGCTTTCCTAAAATGATGTGGTAAACAACCGTTCCAATTGTTTGAATTCTATTTTTTTTTATTAAGTTCTCATGAATTTATCATAATTTCCAGCTGGAACGACATATAATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGGGTGATGGTCTCTTAGATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGGGTAATGAAGAACAAGTGGAAAATATTTCTCAACTGGATCAGGANAATGAGGATCAAAATAATAAATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCTTACAGTTTATAGAAAATGCATCGTGTATGCCGCTTCATCCTGTCCAGTCATCAACTGTTTCTGTCGACACTTTTTGAATTGCTTGATAACGTTACTTTCAGATTGCATTTTAAACAACTTTATATCAAATTATCAACGTCTATAGGATATTGCTGTTGATGTCAACTCGCTATCTAGTATCGTCTTTTATGCTACAGATTAATCGTTTAACTTTTTACGTACACTGTTCATGACTATG] consensusID : consensus_8080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 917 fasta sequence [GGGATTGCTGTATGGCGAAGGTCAACATTTGTAATGTTGAGGTTTTGGACAACCCTGCTTCATTTTTTGATCCATTTAAGTTCCGTATAACATTCGAGTGTCATGAACCTCTGGATGATGATCTAGAATGGAAGTTAGTGTACGTTAGCAGCGCATACAACCCATCTTTAGACCAGACATTGGATTCCATCTTAGTTGGTCCAATTCCAGTTGGTCGTCATCAATTTTCTTTTGAGGCTAATGCTCCTGATCCAAAAATAATTCCTAATGAAGATATTGTTGGCGTAACAGTTGTGCTTATACAAGCTTTGTACAGAGATAAAGAATTTATACGTGTTGGTTATTATGTTAACAATGAGTACAAAACAGAAGAATTACGCCTTGAACCACCGGCTGAACCTCTGCTTAACGAACTGGAACGACATATAATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGGTGATGGTCTCTTAGATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGG-GTAATGAAGAACAAGTGGAAAATATTTCTCAACTGGATCAGGAAAATGAGGATCAAAATAATAAATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCGTACAGTTTATAGAAAATGCATCGTGTATGCCGCTCCATCCTGTCCAGTCATCAACTGTTCCTGTCGACACTTTTTGAATTGCTTGATAAACGTTACTTTCAAGATTGCATTTTAAAACAAACTTTTATATCAGAATTTATCACACGTCTATGATGATATTGCTGTTGTATGTTCAACTCGCTATACTAGGTATCGCTCTTTTTTATGCCTACAAGATTTAATACGTTTTACACTTTTTTAACTGTACAACTGTTCGATGTACCTAATAGCAT] [+] EMBL CD083086 [GGGATTGCTGTATGGCGAAGGTCAACATTTGTAATGTTGAGGTTTTGGACAACCCTGCTTCATTTTTTGATCCATTTAAGTTCCGTATAACATTCGAGTGTCATGAACCTCTGGATGATGATCTAGAATGGAAGTTAGTGTACGTTAGCAGCGCATACAACCCATCTTTAGACCAGACATTGGATTCCATCTTAGTTGGTCCAATTCCAGTTGGTCGTCATCAATTTTCTTTTGAGGCTAATGCTCCTGATCCAAAAATAATTCCTAATGAAGATATTGTTGGCGTAACAGTTGTGCTTATACAAGCTTTGTACAGAGATAAAGAATTTATACGTGTTGGTTATTATGTTAACAATGAGTACAAAACAGAAGAATTACGCCTTGAACCACCGGCTGAACCTCTGCTTAACGAACTGGAACGACATATAATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGGTGATGGTCTCTTAGATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGGNGT ATGAAG ] [-] EMBL CD074788 [ TACAAAACAGAAGAATTACGCCTTGAACCACCGGCTGAACCTCTGCTTAACGAACTGGAACGACATATAATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGGTGATGGTCTCTTAGATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGG GTAATGAAGAACAAGTGGAAAATATTTCTCAACTGGATCAGGAAAATGAGGATCAAAATAATAAATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCGTACAGTTTATAGAAAATGCATCGTGTATGCCGCTCCATCCTGTCCAGTCATCAACTGTTCCTGTCGACACTTTTTGAATTGCTTGATAAACGTTACTTTCAAGATTGCATTTTAAAACAAACTTTTATATCAGAATTTATCACACGTCTATGATGATATTGCTGTTGTATGTTCAACTCGCTATACTAGGTATCGCTCTTTTTTATGCCTACAAGATTTAATACGTTTTACACTTTTTTAACTGTACAACTGTTCGATGTACCTAATAGCAT] [-] EMBL CD076660 [ ACCGGCTGAACCTCTGCTTAACGAACTGGAACGACATATAATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGGTGATGGTCTCTTAGATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGG GTAATGAAGAACAAGTGGAAAATATTTCTCAACTGGATCAGGAAAATGAGGATCAAAATAATAAATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCGTACAGTTTATAGAAAATGCATCGTGTATGCCGCTCCATCCTGTCCAGTCATCAACTGTTCCTGTCGACACTTTTTGAATTGCTTGATAAACGTTACTTTCAAGATTGCATTTTAAAACAAACTTTTATATCAGAATTTATCACACGTCTATGATGATATTGCTGTTGTATGTTCAACTCGCTATACTAGGTATCGCTCTTTTTTATGCCTACAAGATTTAATACGTTTTACACTTTTTTAACTGTACAACTGTTCGATGTACCTAATAGCAT] consensusID : consensus_8080#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [GAGTGTCATGAACCTCTGGATGATGATCTAGAATGGAAGTTAGTGTACGTTAGCAGCGCATACAACCCATCTTTAGACCAGACATTGGATTCCATCTTAGTTGGTCCAATTCCAGTTGGTCGTCATCAATTTTCTTTTGAGGCTAATGCTCCTNNNNNAAAAATAATTCCTAATGAAGATATTGTTGGCGTAACAGTTGTGCTTATACAAGCTTTGTACAGAGATAAAGAATTTATACGTGTTGGTTATTATGTTAACAATGAGTACAAAACAGAAGAATTACGCCTTGAACCACCGGCTGAACCTNNNNNNNNNNNNNNNNAACGACATATAATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGGTGATGGTCTCTTAGATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGGGTAATGAAGAACAAGTGGAGATCAAAATAATAAATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCGTACAGTTTATAGAAAATGCATCGTGTATGCCGCTCCATCCTGTCCAGTCATCAACTGTTCCTGTCGACACTTTTTGAATTGCTTGATAAACGTTACTTTCAAGATTGCATTNTANAACAAACTTTGTATGTTCACTCGCATACTAGTATCGCTCTTTTTATGCTACAGATTTATACGTTTACACTTTTACTGACACTGTCGATGACTAT] [+] EMBL CD080955 [GAGTGTCATGAACCTCTGGATGATGATCTAGAATGGAAGTTAGTGTACGTTAGCAGCGCATACAACCCATCTTTAGACCAGACATTGGATTCCATCTTAGTTGGTCCAATTCCAGTTGGTCGTCATCAATTTTCTTTTGAGGCTAATGCTCCTNNNNNAAAAATAATTCCTAATGAAGATATTGTTGGCGTAACAGTTGTGCTTATACAAGCTTTGTACAGAGATAAAGAATTTATACGTGTTGGTTATTATGTTAACAATGAGTACAAAACAGAAGAATTACGCCTTGAACCACCGGCTGAACCTNNNNNNNNNNNNNNNNAACGACATATAATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGGTGATGGTCTCTTAGATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGGGTAATGAAGAACAAGTGGAGATCAAAATAATAAATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCGTACAGTTTATAGAAAATGCATCGTGTATGCCGCTCCATCCTGTCCAGTCATCAACTGTTCCTGTCGACACTTTTTGAATTGCTTGATAAACGTTACTTTCAAGATTGCATTNTANAACAAACTTTGTATGTTCACTCGCATACTAGTATCGCTCTTTTTATGCTACAGATTTATACGTTTACACTTTTACTGACACTGTCGATGACTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8080#1 ------------------------------------------------------------ consensus_8080#2 ------------------------------------------------------------ consensus_8080#0 CACCGGCATAAACAAGTTTATACACAGACTGAAGCTAATTCATAAGTTACTTGTATTAGT 60 consensus_8080#1 ------------------------------------------------------------ consensus_8080#2 ------------------------------------------------------------ consensus_8080#0 ACATTGTGCCGTCAAATAATATTAACTAAAACCCGAAAGGTGATATCAAAGTAAATGGCA 120 consensus_8080#1 ------------------------------------------------------------ consensus_8080#2 ------------------------------------------------------------ consensus_8080#0 CGAAATAAACATTCTCACTGTTTTCTGCTTATGACTTGCCTAGTTGATGCGATGTATCAA 180 consensus_8080#1 ------------------------------------------------------------ consensus_8080#2 ------------------------------------------------------------ consensus_8080#0 CAAGTATTTAAAACAAAGAGCCTACAAACTATCGATTAATAACTCATAGTACGGTGTGAT 240 consensus_8080#1 ------------GGGATTGCTGTATGGCGAAGGTCAACATTTGTAATGTTGAGGTTTTGG 48 consensus_8080#2 ------------------------------------------------------------ consensus_8080#0 GAATCAAAGCAGTTTATGGATTAATGGGTCAGTATGTGCTCATTTACCAGGAGATTATCA 300 consensus_8080#1 ACAACCCTGCTTCATTTTTTGATCCATTTAAGTTCCGTATAACATTCGAGT-GTCAT-GA 106 consensus_8080#2 -----------------------------------------------GAGT-GTCAT-GA 11 consensus_8080#0 AATAAATTACACCTGCTTTTGCTGTCCTATCAGGATGAAGATTTTTTAGATAGACATCGC 360 * * *** * consensus_8080#1 ACCTCTGGATGATGA-TCTAGAATGGAAGT---TAGTGTACGTT----AGCAGCGCAT-- 156 consensus_8080#2 ACCTCTGGATGATGA-TCTAGAATGGAAGT---TAGTGTACGTT----AGCAGCGCAT-- 61 consensus_8080#0 TTCACCTGGTGATAAATTCAGTGCGATATTGTATAGAAAACGTTTACCAGTTCCGTATCA 420 * * * **** * * ** * * * *** ***** ** ** ** consensus_8080#1 ACAACCCATCTTTAGACCAG-ACATTGGA-----TTCCATCTTAGTTGGTCCAATTCCAG 210 consensus_8080#2 ACAACCCATCTTTAGACCAG-ACATTGGA-----TTCCATCTTAGTTGGTCCAATTCCAG 115 consensus_8080#0 ACTACATACTTTCAAAGTATCGTTTTAGAAATTATTGTCTCTCTGTGGTTCCCAT--CAT 478 ** ** * ** * * * ** ** ** *** ** * *** ** ** consensus_8080#1 TTGGTCGTCATCAATTTTCTTTTGAGGCTAATGCTCCTGATCCAAAAA--TAATTCCTAA 268 consensus_8080#2 TTGGTCGTCATCAATTTTCTTTTGAGGCTAATGCTCCTNNNNNAAAAA--TAATTCCTAA 173 consensus_8080#0 TTGACTGTTACCAGCCCATTACATAAGCAGATAACCGAAAATTGATATCTTGGCTTTTGT 538 *** ** * ** * * ** ** * * * * * * consensus_8080#1 TGAAGATATT--GTTGGCGTAACAGTTGTGCTTATA-CAAGCTTTGTACAGAGATAAAGA 325 consensus_8080#2 TGAAGATATT--GTTGGCGTAACAGTTGTGCTTATA-CAAGCTTTGTACAGAGATAAAGA 230 consensus_8080#0 TGTTGTCATTACGCTGTTAAAATGTATGAACCCGTGTCTAGTAATATGCTTACTTAAATT 598 ** * *** * ** ** ** * * * ** * * * * **** consensus_8080#1 ATTTATACGTGTTGGTT--------ATTATGTTAACAATGA--GTACAAAACAGAAGAAT 375 consensus_8080#2 ATTTATACGTGTTGGTT--------ATTATGTTAACAATGA--GTACAAAACAGAAGAAT 280 consensus_8080#0 ATATTGATAAGAAAGCTTTCCTAAAATGATGTGGTAAACAACCGTTCCAATTGTTTGAAT 658 ** * * * * * ** **** ** * ** * ** **** consensus_8080#1 TACGCCTTGAACCACCGGCT------GAACCTCTGCTTAA--CGAACTGGAACGACATAT 427 consensus_8080#2 TACGCCTTGAACCACCGGCT------GAACCTNNNNNNNN--NNNNNNNNAACGACATAT 332 consensus_8080#0 TCTATTTTTTTTTATTAAGTTCTCATGAATTTATCATAATTTCCAGCTGGAACGACATAT 718 * ** * * *** * ********** consensus_8080#1 AATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGG-TGATGGTCTCTTAG 486 consensus_8080#2 AATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGG-TGATGGTCTCTTAG 391 consensus_8080#0 AATAGCTTCAGACCCTCGTGTTACTCGCTTTCCAATTGACTGGGGGTGATGGTCTCTTAG 778 ********************************************* ************** consensus_8080#1 ATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGGGTA 546 consensus_8080#2 ATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGGGTA 451 consensus_8080#0 ATGGGTGTCCAGAACCAGAACAGCCTACAGAAGATAACGAAGAGTCTAATTTACTGGGTA 838 ************************************************************ consensus_8080#1 ATGAAGAACAAGTGGAAAATATTTCTCAACTGGATCAGGAAAATGAGGATCAAAATAATA 606 consensus_8080#2 ATGAAGAACAAGTGGA-------------------------------GATCAAAATAATA 480 consensus_8080#0 ATGAAGAACAAGTGGAAAATATTTCTCAACTGGATCAGGANAATGAGGATCAAAATAATA 898 **************** ************* consensus_8080#1 AATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCGTACAGTTTATAGAAAATGCAT 666 consensus_8080#2 AATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCGTACAGTTTATAGAAAATGCAT 540 consensus_8080#0 AATTAGACCCATCTAACTTTTGTGAAGGCCAGTCTGGCTTACAGTTTATAGAAAATGCAT 958 ************************************** ********************* consensus_8080#1 CGTGTATGCCGCTCCATCCTGTCCAGTCATCAACTGTTCCTGTCGACACTTTTTGAATTG 726 consensus_8080#2 CGTGTATGCCGCTCCATCCTGTCCAGTCATCAACTGTTCCTGTCGACACTTTTTGAATTG 600 consensus_8080#0 CGTGTATGCCGCTTCATCCTGTCCAGTCATCAACTGTTTCTGTCGACACTTTTTGAATTG 1018 ************* ************************ ********************* consensus_8080#1 CTTGATAAACGTTACTTTCAAGATTGCATTTTAAAACAAACTTTTATATCAGAATTTATC 786 consensus_8080#2 CTTGATAAACGTTACTTTCAAGATTGCATTNTANAACAAACTTT-GTATGTTCACTCG-C 658 consensus_8080#0 CTTGATAA-CGTTACTTTCA-GATTGCATTTTAAA--CAACTTT---ATATCAAATTATC 1071 ******** *********** ********* ** * ****** ** * * * consensus_8080#1 ACACGTCTATGATGATATTGCTGTTGTATGTTCAACTCGCTATACTAGGTATCGCTCTTT 846 consensus_8080#2 ATACTAGTATCGCTCTTTTTATGCTACAGATTTATACGTTTACACTTT-TACTGACACTG 717 consensus_8080#0 A-ACGTCTATAG-GATATTGCTGTTG-ATGT-CAACTCGCTAT-CTAG-TATCGTCTTTT 1125 * ** *** * ** ** * * * * ** ** ** * * consensus_8080#1 TTTATGCCTACAAGATTTAATACGTTTTACACTTTTTTAACTGTACAACTGTTCGATGTA 906 consensus_8080#2 TCGATGACTAT------------------------------------------------- 728 consensus_8080#0 ATGCTACAGATTAATCGTTTAACTTTTTACGTACACTGTTCATGACTATG---------- 1175 * * consensus_8080#1 CCTAATAGCAT 917 consensus_8080#2 ----------- consensus_8080#0 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||