These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 630 fasta sequence [ATTTCACCAAGAGCATCATGTTGTATGGCATCTTCCAGTCAAACGCACAATTTTCAGTATGGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCATGTCCCAACAGAAAATTAATTCCGAACTACAAGTCAATAATCGTTCATTATTTTCTTCCAGTAATAGTGGTTCATTGATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGTCGGTGAATTTGTCGTACGTTGAAATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAATACTTCTGATGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACANATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGT] [-] EMBL CD201197 [ATTTCACCAAGAGCATCATGTTGTATGGCATCTTCCAGTCAAACGCACAATTTTCAGTATGGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCATGTCCCAACAGAAAATTAACTCCGAACTACAAGTCAATAATCGTTCATTATTTTCTTCCAGTAATAGTGGTTCATTGATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGTCGGTGAATTTGTCGTACGTTGAGATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAACACTTCTGATGGGGGACATTTACTGA ] [+] EMBL CD116722 [ TCACCAAGAGCATCATGTTGTATGGCATCTTCCAGTCAAACGCACAATTTTCAGTATGGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCATGTCCCAACAGAAAATTAATTCCGAACTACAAGTCAATAATCGTTCTTTATTTTCTTCCAGTAATAGTGGTTCATTGATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGTCGGTGAATTTGTCGTACGTTGAAATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAATACTTCTGATGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACANATTCTAGTAAACGATGTCGTAGTGG ] [-] EMBL CD112676 [ AACGCACAATTTTCAGTATGGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCGTGTCCCAACAGAAAATTAATTCCGAACTACAAGTCAATAATCGTTCATTATTTTCTTCCAGTAATAGTGGTTCATTGATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGTCGGTGAATTTGTCGTACGTTGAAATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAATACTTCTGATGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCA ] [+] EMBL CD123093 [ cgACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCCAGCAAAAAATCACTCTGTTGGACATCATACAGATATGAATACTTCTGATGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGT] consensusID : consensus_8082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CGAACTAATAAACTCTCAGTTCGTGGTTGTGAAGATCGAATTTCAACGTACGACAAATTCACCGACGATGTAACAGTACCAGCACCAACAGTAATCGTTGTCGTAATCAATGAACCACTATTACTGGAAGAAAATAATGAACGATTATTGACTTGTAGTTCGGAATTAATTTTCTGTTGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAAACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAGAAAAAATTCTGGTATATCTGAAGCACAAAATC] [+] EMBL CD200990 [CGAACTAATAAACTCTCAGTTCGTGGTTGTGAAGATCGAATTTCAACGTACGACAAATTCACCGACGATGTAACAGTACCAGCACCAACAGTAATCGTTGTCGTAATCAATGAACCACTATTACTGGAAGAAAATAATGAACGATTATTGACTTGTAGTTCGGAATTAATTTTCTGTTGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACTTGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAAACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAGAAAAAATTCTGGTATATCTGAAGCACAAAATC] consensusID : consensus_8082#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GGGCCGGCCCGGTCTGGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGAGACCTCTCAACTTGTTCCAAATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAAACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAAAAAAAATTCTGGTATATCTGAAGCACAAAATTC] [+] EMBL CD200821 [GGGCCGGCCCGGTCTGGGGGGACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGAGACCTCTCAACTTGTTCCAAATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAATCAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTCTCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGGTCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAAACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAAAAAAAATTCTGGTATATCTGAAGCACAAAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8082#1 ------------------------------------------------------------ consensus_8082#2 ------------------------------------------------------------ consensus_8082#0 ATTTCACCAAGAGCATCATGTTGTATGGCATCTTCCAGTCAAACGCACAATTTTCAGTAT 60 consensus_8082#1 ------------------------------------------------------------ consensus_8082#2 ------------------------------------------------------------ consensus_8082#0 GGTTCACCTGTTTTGACAGAAGTAGCTTATAGCCCAATATCCATGTCCCAACAGAAAATT 120 consensus_8082#1 ------------------------------------------------------CGAACT 6 consensus_8082#2 ------------------------------------------------------------ consensus_8082#0 AATTCCGAACTACAAGTCAATAATCGTTCATTATTTTCTTCCAGTAATAGTGGTTCATTG 180 consensus_8082#1 AATAAACTCTCAGTTCGTGGTTGTGAAGATCGAATTTCAACGTACGACAAATTCACCG-A 65 consensus_8082#2 ------------------------------------------------------------ consensus_8082#0 ATTACGACAACGACTACTGTTGGTGCTGGTACTGTTACATCGT-CGGTGAATTTGTCGTA 239 consensus_8082#1 CGATGTAACAGTACCAGCACCAACAGTAATCGTTGTCGTAATCAATGAACCACTATTACT 125 consensus_8082#2 ------------------------------------------------------------ consensus_8082#0 CGTTGAAATTCGATCTTCACAACCACGAACTGAGAGTTTATTAGTTCGTTTACTTCACCC 299 consensus_8082#1 GGAAGAAAATAATGAACGATTATTGACTTGTAGTTCGGAATTAATTT--TCTGTTGGG-- 181 consensus_8082#2 -------------------------------------GGGCCGGCCCGGTCTGGGGGG-- 21 consensus_8082#0 AGCAAAAAATCACT-----CTGTTGGAC-ATCATACAGATATGAATACTTCTGATGGGGG 353 * **** *** consensus_8082#1 ACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACT 241 consensus_8082#2 ACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGAGACCTCTCAACT 81 consensus_8082#0 ACATTTACTGAAGTTATCCTCTCCAACATTACCACGTTCTGTAGCTGTGACCTCTCAACT 413 *********************************************** ************ consensus_8082#1 TGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAAT 301 consensus_8082#2 TGTTCCAAATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAAT 141 consensus_8082#0 TGTTCCAGATACAACTGATTTTAACACTTCTAACATAATTACAAACACTGAATCTGAAAT 473 ******* **************************************************** consensus_8082#1 CAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTC 361 consensus_8082#2 CAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTC 201 consensus_8082#0 CAATAATTTACAACGACAACTAAACAATCGAAAATCGGAATGTCGATTAATAGCTGTTTC 533 ************************************************************ consensus_8082#1 TCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGG 421 consensus_8082#2 TCTAGATAATCTATGCAATAATCAACCAACAACAAATTCTAGTAAACGATGTCGTAGTGG 261 consensus_8082#0 TCTAGATAATCTATGCAATAATCAACCAACAACANATTCTAGTAAACGATGTCGTAGTGG 593 ********************************** ************************* consensus_8082#1 TCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAA 481 consensus_8082#2 TCCTGCAACTACACAATCAATTTCATCACCATTTAGTCCACATATATCACCCGGTAATAA 321 consensus_8082#0 TCCTGCAACTACACAATCAATTTCATCACCATTTAGT----------------------- 630 ************************************* consensus_8082#1 ACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAGAAAAAATTC 541 consensus_8082#2 ACGAACTCGACATGCTTCACAATTTGAAGAAGTTCCTTCGCCTAGTATAAAAAAAAATTC 381 consensus_8082#0 ------------------------------------------------------------ consensus_8082#1 TGGTATATCTGAAGCACAAAATC- 564 consensus_8082#2 TGGTATATCTGAAGCACAAAATTC 405 consensus_8082#0 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||