These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 820 fasta sequence [ATCGCAGTAACATAGCTGAATTGGAAGAAAAAGTTCGAACATATTTTGAAGGTGTTAGTATTGATGAATTCTTACTTCCAACTGAACCTGATATTGGTGATGACCAAAGTGAAGATACACCATCTGTCGTGGTAGAAGAAGGAAATACCTACCATCTGGATGGACATATTATGATAAGCTACAGTCATAACGATTACAAAATAGCACTTAAAATTAAAGAAAGCTTGGAAAATGAGGAAATCAAGTTTTGGATTGACAAAGAACACATGGTTCAACATGTTAAGATTTTAGATGCTATGGCAAACGCTGTAGAAAATGCTGCTATCGTATTAATACTTTTTTCGAAATCATACCAAGATAGTGAAAATACTAAAGCAGAAGCTGAATACACTCGAAAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACC-AAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACTTAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGNATTNTTTTACTCTAAATCCG-TTATTGGTTTAT-AATGATTTTACTATCAGTGATCAGAAACTTTACT-ACGCTTATTNAACTNT-ATATTTNTCTATCACATTG-AATANTATATATGGTA] [+] EMBL CD079445 [ATCGCAGTAACATAGCTGAATTGGAAGAAAAAGTTCGAACATATTTTGAAGGTGTTAGTATTGATGAATTCTTACTTCCAACTGAACCTGATATTGGTGATGACCAAAGTGAAGATACACCATCTGTCGTGGTAGAAGAAGGAAATACCTACCATCTGGATGGACATATTATGATAAGCTACAGTCATAACGATTACAAAATAGCACTTAAAATTAAAGAAAGCTTGGAAAATGAGGAAATCAAGTTTTGGATTGACAAAGAACACATGGTTCAACATGTTAAGATTTTAGATGCTATGGCAAACGCTGTAGAAAATGCTGCTATCGTATTAATACTTTTTTCGAAATCATACCAAGATAGTGAAAATACTAAAGCAGAAGCTGAATACACTCGAAAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTANAACCCAAGAAACC AAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCANAAAGTACTGAGTCCAACTTANAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGNATTNTTTTACTCTAAATCCG TTATTGGTTTAT AATGATTTTACTATCAGTGATCAGAAACTTTACT ACGCTTATTNAACTNT ATATTTNTCTATCACATTG AATANTATATATGG ] [-] EMBL CD073715 [ AACGATTACAAAATAGCACTTAAAATTAAAGAAAGCTTGGAAAATGAGGAAATCAAGTTTTGGATTGACAAAGAACACATGGTTCAACATGTTAAGATTTTAGATGCTATGGCAAACGCTGTAGAAAATGCTGCTATCGTATTAATACTTTTTTCGAAATCATACCAAGATAGTGAAAATACTAAAGCAGAAGCTGAATACACTCGAAAACTAAATAAACCAGCTATTTTTTTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACC AAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACTTAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGTATTTTTTTACTCT AATCCGTTTATT GTTTATAAATGATTTTACTATCAGTGATCAGAAACTTTACTAACGCTTATTTAACTTTAATATTGTTCTATCACATTGAAAAAAAATATAATGTA] [+] EMBL CD181612 [ AAAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACC AAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGAAGATTCAAAAAGTACTGAGTCCAACTTANAAA ] [-] EMBL CD181352 [ AAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACCAAAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACTTAAAAAC ] [-] EMBL CD181537 [ AAACTAAATAAACCAGCTATTTTTCTTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTACAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACC AAAAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACTTAAAAAC ] consensusID : consensus_8106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [TGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAGATTTGAAGAATTATGCACTACAATTAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGTGATTCAAAAAGTACTGAGTCCAACTTAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGTATTTTTTTACTCTAATCCGTTTATTGTTTATAAATGATTTTACTATCAGTGATCAGAAACTTTACTAACGCTTATTTAACTTTAATATTTTTCTATCACATTGAAAATATATATAATGTATTCTATGCGACATTTTGA] [+] EMBL CD139811 [TGGGTTTCATAATGGGCGAGAGTCGTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAGATTTGAAGAATTATGCACTACAATTAAAAACACAAGAATATGCATGCGTTTCAATGTGAAGAAATGGTGATTCAAAAAGTACTGAGTCCAACTTAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGTATTTTTTTACTCTAATCCGTTTATTGTTTATAAATGATTTTACTATCAGTGATCAGAAACTTTACTAACGCTTATTTAACTTTAATATTTTTCTATCACATTGAAAATATATATAATGTATTCTATGCGACATTTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8106#0 ATCGCAGTAACATAGCTGAATTGGAAGAAAAAGTTCGAACATATTTTGAAGGTGTTAGTA 60 consensus_8106#1 ------------------------------------------------------------ consensus_8106#0 TTGATGAATTCTTACTTCCAACTGAACCTGATATTGGTGATGACCAAAGTGAAGATACAC 120 consensus_8106#1 ------------------------------------------------------------ consensus_8106#0 CATCTGTCGTGGTAGAAGAAGGAAATACCTACCATCTGGATGGACATATTATGATAAGCT 180 consensus_8106#1 ------------------------------------------------------------ consensus_8106#0 ACAGTCATAACGATTACAAAATAGCACTTAAAATTAAAGAAAGCTTGGAAAATGAGGAAA 240 consensus_8106#1 ------------------------------------------------------------ consensus_8106#0 TCAAGTTTTGGATTGACAAAGAACACATGGTTCAACATGTTAAGATTTTAGATGCTATGG 300 consensus_8106#1 ------------------------------------------------------------ consensus_8106#0 CAAACGCTGTAGAAAATGCTGCTATCGTATTAATACTTTTTTCGAAATCATACCAAGATA 360 consensus_8106#1 ------------------------------------------------------------ consensus_8106#0 GTGAAAATACTAAAGCAGAAGCTGAATACACTCGAAAACTAAATAAACCAGCTATTTTTC 420 consensus_8106#1 ------------------------------------------------------------ consensus_8106#0 TTCGTGTTGAGTCGAAGTTTGTTCCAAGTGGTTGGCTGGGTTTCATAATGGGCGAGAGTC 480 consensus_8106#1 ------------------------------------TGGGTTTCATAATGGGCGAGAGTC 24 ************************ consensus_8106#0 GTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAAATTTGAAGAATTATGCACTA 540 consensus_8106#1 GTTATATTGACTTTTCCGGGAAATATCCGTTTGAGGAAAGATTTGAAGAATTATGCACTA 84 *************************************** ******************** consensus_8106#0 CAATTCACAATATTAGTCGTGGATCGATCATTGTAAAACCCAAGAAACCAAAAAAAACAC 600 consensus_8106#1 CAATT-----------------------------------------------AAAAACAC 97 ***** ******** consensus_8106#0 AAGAATATGCATGCGTTTCAATGTGAAGAAATGGAGATTCAAAAAGTACTGAGTCCAACT 660 consensus_8106#1 AAGAATATGCATGCGTTTCAATGTGAAGAAATGGTGATTCAAAAAGTACTGAGTCCAACT 157 ********************************** ************************* consensus_8106#0 TAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGNATTNTTTTACTCTAAAT 720 consensus_8106#1 TAAAAACCTACTTTGATCAGCTGGAAATCCTTCTCCTTTATGTATTTTTTTACTCTAATC 217 ****************************************** *** *********** consensus_8106#0 CCGTTATTGGTTTATAATGATTTTACTATCAGTGATCAGAAACTTTACTA-CGCTTATTN 779 consensus_8106#1 CGTTTATTGTTTATAAATGATTTTACTATCAGTGATCAGAAACTTTACTAACGCTTATTT 277 * ****** ** *********************************** ******** consensus_8106#0 AACTNTA-TATTTNTCTATCACATTGAATANTATATATGGTA------------------ 820 consensus_8106#1 AACTTTAATATTTTTCTATCACATTGAA-AATATATATAATGTATTCTATGCGACATTTT 336 **** ** ***** ************** * ******* * consensus_8106#0 -- consensus_8106#1 GA 338 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||