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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence
[AACGTTACTCGGATCAAAGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCCGCTCTTACATATCATTCTCCATTGTGTATGGCACCCATTGAAAAAGGCAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGAAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTCTTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTAAAGCAGTTTGTTTCTAGTACAAGTGCAATAATCAATGAAAATGGTATTCTCTATCATCAATACTTGGTGGATCAGTTTGCTACACATATTGAAGAAATTCATAGTGCATTTATTTGAAGTACTCTTATTTTTATGTCAAAAGTTTAGTCATGCTACATCATATGATGAATGCATCCC]
[+] EMBL BF936498 [AACGTTACTCGGATCAAAGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCCGCTCTTACATATCATTCTCCATTGTGTATGGCACCCATTGAAAAAGGCAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGAAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTCTTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTAAAGCAGTTTGTTTCTAGTACAAGTGCAATAATCAATGAAAATGGTATTCTCTATCATCAATACTTGGTGGATCAGTTTGCTACACATATTGAAGAAATTCATAGTGCATTTATTTGAAGTACTCTTATTTTTATGTCAAAAGTTTAGTCATGCTACATCATATGATGAATGCATCCC]
consensusID : consensus_8121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 586 fasta sequence
[TCAATTATTGTTCACTCATAACGTAGATGTGTAGAGTCACTTGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTC-CA-T-TGTGTATGGCACCC-ATTGAAAAAGGC-AAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGGAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTCTTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTTAAGCA]
[+] EMBL CD192886 [TCAATTATTGTTCACTCATAACGTAGATGTGTAGAGTCACTTGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTC CA T TGTGTATGGCACCC ATTGAAAAAGGC AAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGGAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTCTTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTTAAGCA]
[+] EMBL CD196500 [ TCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAATTTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCATGGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGGAGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCATCATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTC CA T TGTGTATGGCACCC ATTGAAAAAGGC AAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAG ]
[+] EMBL CD063585 [ TGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTCACA TATGTGTATagg ]
[-] EMBL CD063552 [ TAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTAACTGTCTCGAATCAGCTGCTCTTACATATCATTCTC CAGT TGTGTATGGCACCCTATTGAAAAAGGCTAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTCCAGAAAGTGGCACTATCTTTTTGCTTGTTCGCATTG ]
consensusID : consensus_8121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[TTCGAAGATACTCGCTTTTATTAAGACTTTGCAGTATCAACACTTTTCACTGACTCATAGACATGTGACTAAACTCTCTTAATGTCGCTTGAAAAACTAGCTGGTATCTAAGTTCCTAAATATTAATCATGGAAATAGACCACAAAGTGTTCATTACGCTGCATTGAAAAATCTAACTTATAAGTTCCTAAATCATTCAAACCCAACTGGGTTCATGTACTCGTTATAAAGCTAATTGACTGTCTAAATATCAAACGTGGTTGGCGATCAAGAGATCTGATCGTTAAGCCATCGTAATATTACTCTTAAACCTTTATTCTGGATACGGACTCTTAATGTGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACACGTGGAAGGGGTCTTGTTGCTACTC]
[+] EMBL CD129550 [TTCGAAGATACTCGCTTTTATTAAGACTTTGCAGTATCAACACTTTTCACTGACTCATAGACATGTGACTAAACTCTCTTAATGTCGCTTGAAAAACTAGCTGGTATCTAAGTTCCTAAATATTAATCATGGAAATAGACCACAAAGTGTTCATTACGCTGCATTGAAAAATCTAACTTATAAGTTCCTAAATCATTCAAACCCAACTGGGTTCATGTACTCGTTATAAAGCTAATTGACTGTCTAAATATCAAACGTGGTTGGCGATCAAGAGATCTGATCGTTAAGCCATCGTAATATTACTCTTAAACCTTTATTCTGGATACGGACTCTTAATGTGTCCATTCAAACTAATGAATCTCACAAGAGAAGTCGATTTCGGACCAACACGTGGAAGGGGTCTTGTTGCTACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8121#0 -------------------AACGT---TACTCGGATCAAA--GTCCATTCAAACTAATGA 36
consensus_8121#1 TCAATTATTGTTCACTCATAACGTAGATGTGTAGAGTCACTTGTCCATTCAAACTAATGA 60
consensus_8121#2 ------------------------------------------------------------
consensus_8121#0 ATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAAT 96
consensus_8121#1 ATCTCACAAGAGAAGTCGATTTCGGACCAACTCGTGGAAGGGGTCTTGTTGCTACTCAAT 120
consensus_8121#2 ------------------------------------------------------------
consensus_8121#0 TTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCAT 156
consensus_8121#1 TTATAAATCCTGAAGACATCCTTTTTTCAGAAGATCCTCTAATATGCTGTCAGTTTTCAT 180
consensus_8121#2 --------TTCGAAGATACTCGCTTTTATTAAGACTTTGCAGTAT--CAACACTTTTCAC 50
***** * * **** **** * * *** ** ******
consensus_8121#0 GGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGG 216
consensus_8121#1 GGAACAAGCTCTATGGATATAAAGCTTGTGATCATTGTTTGTGTCCACTCGAAACATCGG 240
consensus_8121#2 TGA------CTCATAGACATGTGACT---AAACTCTCTTAATGTC-GCTTGAAAAACTAG 100
** ** ** ** ** * * * ** **** ** **** * *
consensus_8121#0 AGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCAT 276
consensus_8121#1 AGGAGAATATAAGGAGACTTACTAACAATCCATCGCTTGTATTACCTTATTCAGAGGCAT 300
consensus_8121#2 CTG-GTATCTAAG-----TTCCTAAATATTAATCA-TGGAAATAGACCA--CAAAGTGTT 151
* * ** **** ** **** ** *** * * * ** * ** ** *
consensus_8121#0 CATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTA 336
consensus_8121#1 CATTTCACTGTAACCAAGCTGTTCACTGTCCTAATTGCTTAGTTAACTACTGTTCTCCTA 360
consensus_8121#2 CATTACGCTGCATTGAAAAATCTAACT-TATAAGTTCCTAAATCATTCAA-----ACCCA 205
**** * *** * ** * *** * * ** ** * * * * ** *
consensus_8121#0 ACTGTCTCGAATCAGCCGCTCTTACATATCATTCTCCATTGTGTATGGCACCCATTGAAA 396
consensus_8121#1 ACTGTCTCGAATCAGCTGCTCTTACATATCATTCTCCATTGTGTATGGCACCCATTGAAA 420
consensus_8121#2 ACTGGGTTCATGTACTCG-TTATAAAGCTAATTGACTGTC-TAAATATCAAACGTGGTTG 263
**** * * * * * ** * * *** * * * ** ** * * *
consensus_8121#0 AAGGCAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTC 456
consensus_8121#1 AAGGCAAGGAAAATCCATTAGGAAAATTGGACATAATCTGGCGACAGTCTCATTATCCTC 480
consensus_8121#2 GCGATCAAGAGATCTGATC--GTTAAGCCATCGTAATATTACTCTTAAACCTTTATTCT- 320
* * ** * ** * ** * **** * * * **** **
consensus_8121#0 CAGAAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTC 516
consensus_8121#1 CAGGAAGTGGCACTATCTTTTTGCTTGTTCGCATTGTTGCCGCATGTCTATCAGCGTGTC 540
consensus_8121#2 --GGATACGG-ACTCTTAATGTGTCCATTCAAACTAATGAATCTCAC--AAGAGAAGTCG 375
* * ** *** * * ** *** * * ** * * **
consensus_8121#0 TTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTAAAGCAGTTTGTTTCTAGTA 576
consensus_8121#1 TTATTGGTTCATCGACCTCACAGCATTTAGTCGAAGCACTTAAGCA-------------- 586
consensus_8121#2 ATTTCGGACCAACACGTGGAAGGGGTCTTGTTGCTACTC--------------------- 414
* * ** ** * * * * * ** * * *
consensus_8121#0 CAAGTGCAATAATCAATGAAAATGGTATTCTCTATCATCAATACTTGGTGGATCAGTTTG 636
consensus_8121#1 ------------------------------------------------------------
consensus_8121#2 ------------------------------------------------------------
consensus_8121#0 CTACACATATTGAAGAAATTCATAGTGCATTTATTTGAAGTACTCTTATTTTTATGTCAA 696
consensus_8121#1 ------------------------------------------------------------
consensus_8121#2 ------------------------------------------------------------
consensus_8121#0 AAGTTTAGTCATGCTACATCATATGATGAATGCATCCC 734
consensus_8121#1 --------------------------------------
consensus_8121#2 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||