These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 779 fasta sequence [GTGGTGTTGATTAGAGTGAGACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTTTTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAATTTCACGTTT--AACAAAATACAGTATGAGGTTTATACAGCTAATAATTGGCTGTGAA-CAATGTGTTTACTG-TTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGTGGACGGCAGACCAGGCAAACCGTGTTTTATGCATGGGGAAGGTAATTATTTTTTTTACTCATTCCTCTAGACCATGGTACTTGATTCTCTATCGTGAAACATCTTTTCATAATTCTAACTTGTCAGTCAGATTTATCAGTACAAATGGTACCTACTCTTTTTATCCGAAAAGAAAATATGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAACTATATTGGGAACAATTCCATGTTAATTTATCGCCTAAGAGATATTCAAATTAAAAAGATACTAAATAATCCAATGAATTATAAATCAGCCACTTTATTGGCCCTAGAAACTGATACATTTGATATCTACA-TAGACGAAAACGATTTATCCCCGC] [+] EMBL CD190130 [GTGGTGTTGATTAGA ACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTTTTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAATTTCACGTTT AACAAAATACAGTATGAGGTTTATACAGCTAATAATTGGCTGTGAA CAATGTGTTTACTGTTTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGT ] [+] EMBL CD160983 [ TGGTGTTGATTAGAGTGAGACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTTTTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAATTTCACGTTT AACAAAATACAGTATGAGGTTTATACAGCTAATAATTGGCTGTGAA CAATGTGTTTACTG TTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGTGGACGGCAGACCAGGCAAACCGTGTTTTATGCATGGGGAAGGTAATTATTTTTTTTACTCATTCCTCTAGACCATGGTACTTGATTCTCTATCGTGAAACATCTTTTCATAATTCTAACTTGTCAGTCAGATTTATCAGTACAAATGGTACCTACTCTTTTTATCCGAAAAGAAAATATGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAAC ] [+] EMBL CD161207 [ TGGTGTTGATTAGAGTGAGACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTTTTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAA TTC CTTTTAAAACAAAATACAGTATGAGGTTTATCCCGCTAATAATTGG TGGGAACCAATGTGTTTACTG TTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGTGGACGGCAGACCANGCAAACCGTGTTTTAT ] [-] EMBL CD161339 [ TTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTTCACAGCTGGGACAATATGAGTTA TTGAGAGACCATCCTTTCGTATCGCTCGAGATATTAGTGGACGGCAGACCAGGCAAACCGTGTTTTATGCATGGGGAAGGTAATTA TTTTTTTACTCATTCCTCTAGACCATGGTACTTGATTCTCTATCGTGAAACATCTTTTCATAATTCTAACTTGTCAGTCAGATTTATCAGTACAAATGGTACCTACTCTTTTTATCCGAAAAGAAAATATACAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAACTATATTGGGAACAATTCCATGTTAATTTATCGCCTAAGAGATATTCAAATTAAAAAGATACTAAATAATCCAATGAATTATAAATCAGCCACTTTATTGGCCCTAGAAACTGATACATTTGATATCTACATTAGACGAAAACGATTT ] [-] EMBL CD200134 [ ATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAACTATATTGGGAACAATTCCATGTTAATTTATCGCCTAAGAGATATTCAAATTAAAAAGATACTAAATAATCCAATGAATTATAAATCAGCCACTTTATTGGCCCTAGAAACTGATACATTTGATATCTACA TAGACGAAAACGATTTATCCCCGC] consensusID : consensus_8136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [GTCTCTTTATATCCGAAAAGAAAATATGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAGCTATATTGGGAACGATTCCATGTTAATTTATCGCCTAGGAGATATTCGGATTAGCAAGATACTAGAATATCTACATTAGACGAAAACGATTTGA] [+] EMBL BG931006 [GTCTCTTTATATCCGAAAAGAAAATATGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTTGGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTATTGAGCCATTGTCTGACTACATTAGCTATATTGGGAACGATTCCATGTTAATTTATCGCCTAGGAGATATTCGGATTAGCAAGATACTAGAATATCTACATTAGACGAAAACGATTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8136#0 GTGGTGTTGATTAGAGTGAGACTTTCCAATTGATGTTTTTGTGCTCATTCAGTCATCTTT 60 consensus_8136#1 ------------------------------------------------------------ consensus_8136#0 TTGATTTGAATCCAATTCATGTTACTCCATAAACCTTCCAGACCCTGACATTTAATTTCA 120 consensus_8136#1 ------------------------------------------------------------ consensus_8136#0 CGTTTAACAAAATACAGTATGAGGTTTATACAGCTAATAATTGGCTGTGAACAATGTGTT 180 consensus_8136#1 ------------------------------------------------------------ consensus_8136#0 TACTGTTTTTTCTGACTCTGTTTATTCAGTATACTCTGAGGATAGAATCTGATATATTTT 240 consensus_8136#1 ------------------------------------------------------------ consensus_8136#0 CACAGCTGGGACAATATGAGTTATTTGAGAGACCATCCTTTCGTATCGCTCGAGATATTA 300 consensus_8136#1 ------------------------------------------------------------ consensus_8136#0 GTGGACGGCAGACCAGGCAAACCGTGTTTTATGCATGGGGAAGGTAATTATTTTTTTTAC 360 consensus_8136#1 ------------------------------------------------------------ consensus_8136#0 TCATTCCTCTAGACCATGGTACTTGATTCTCTATCGTGAAACATCTTTTCATAATTCTAA 420 consensus_8136#1 ------------------------------------------------------------ consensus_8136#0 CTTGTCAGTCAGATTTATCAGTACAAATGGTACCTACTCTTTTTATCCGAAAAGAAAATA 480 consensus_8136#1 ----------------------------------GTCTCTTTATATCCGAAAAGAAAATA 26 ****** ***************** consensus_8136#0 TGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTT 540 consensus_8136#1 TGCAGAACTACATACTGGCTATGTATCAGGTTCAAACCAATCATTTGTGTTAGCTCATTT 86 ************************************************************ consensus_8136#0 GGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTAT 600 consensus_8136#1 GGAACCATACACTTCACTCCTTAGCGCTCATATTCATGTGGAATCAGATATTTTTGTTAT 146 ************************************************************ consensus_8136#0 TGAGCCATTGTCTGACTACATTAACTATATTGGGAACAATTCCATGTTAATTTATCGCCT 660 consensus_8136#1 TGAGCCATTGTCTGACTACATTAGCTATATTGGGAACGATTCCATGTTAATTTATCGCCT 206 *********************** ************* ********************** consensus_8136#0 AAGAGATATTCAAATTAAAAAGATACTAAATAATCCAATGAATTATAAATCAGCCACTTT 720 consensus_8136#1 AGGAGATATTCGGATTAGCAAGATACTAGAATATC---TACATTAGACGAAAACGATTTG 263 * ********* **** ********* * *** * **** * * * * ** consensus_8136#0 ATTGGCCCTAGAAACTGATACATTTGATATCTACATAGACGAAAACGATTTATCCCCGC 779 consensus_8136#1 A---------------------------------------------------------- 264 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||