These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 775 fasta sequence [TTTTTTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAGTAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAATGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAAACTTTGCACTTGCTTCCTGAGAGAAAACGACCGGTT-CCGCTGTAGCATTGA-TTTCTGTACCTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTTG-TCC-TGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGATTAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATCAGCAGAATCC-TGCAACAAAATGTAGCTAGTAACAAAAAAACTAGAGCCAGCGAACAGAAAGAAGAAATCATGAAGTAATTGTATTTCAAGAGATCTGATTACACTACACAGCAAAACCAAGTTTTCTCAAACATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCACTGATCACGCTTGAGACGTGCTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCGTTGTCCAAAGGTATTTTTGAAGCACGCTGACTGTTCAGTTTCTCCATGCTCGATG] [+] EMBL AI395325 [TTTTTTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAGTAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAATGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAAACTTTGCACTTGCTTCCCGAGAAAAAACCAACGGGT TCGCTGGAACAATGA ] [+] EMBL AI395313 [ TTTTTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAGTAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAATGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAAACTTTGCACTTGCTTCCTGAGAGAAAACGACCGGTT CCGCTGTAGCATTGA TTTCTGTACCTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTTG GCC TGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGATTAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATTAGCAGAAT ] [+] EMBL AI395034 [ TTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAGTAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAATGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAAACTTTGCACTTGCTTCCTGAGAGAAAACGACCGGTT CCGCTGTAGCATTGA TTTCTGTACCTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTA TTTG TCCTTGAA GGGCAACACGAAGAGCAGTCTCAACTATACATACATCGCGACCTACTAGATTACGAAGCATTGAACCCGTAACACGGATCCNAGCTA GGGCTTTTGATCAGAAGct ] [-] EMBL AA559814 [ anGAAAACGACCGGTTCCCGCTGTAGCATTGATTTTCTGTACCTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTTGTTCC TGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGATTAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATCAGCAGAATCCATGCAACAAA ] [+] EMBL CD119778 [ TTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTTG TCC TGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGATTAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATCAGCAGAATCC TAAAACGAAATGTAGCTAGTAACAAAAAAACTAGAGCCAGCGAACAGAAAGAAGAAATCATGAAGTAATTGTATTTCAAGAGATCTGATTACACTACACAGCAAAACCAAGTTTTCTCAAACATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCACTGATCACGCTTGAGACGTGCTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCGTTGTCCAAAGGTATTTTTGAAGCACGCTGACTGTTCAGTTTCTCCATGCTCGATG] consensusID : consensus_8151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [GAATCGAGCTATGGGCTTTTGATCAGCAGAATCCTANAACGAAATGTAGCTAGTAACAAAAAAAACTACACAGCAAAACCAAGTTTTCTCAAACATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCACTGATCACGCTTGAGACGTGTTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCGTTGTCCAAAGGTATTTTTGAAGCAGACTGACTGTTCACCTCGTGCCGAATCTTGGCCGC] [-] EMBL CD077521 [GAATCGAGCTATGGGCTTTTGATCAGCAGAATCCTANAACGAAATGTAGCTAGTAACAAAAAAAACTACACAGCAAAACCAAGTTTTCTCAAACATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCACTGATCACGCTTGAGACGTGTTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCGTTGTCCAAAGGTATTTTTGAAGCAGACTGACTGTTCACCTCGTGCCGAATCTTGGCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8151#0 TTTTTTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAG 60 consensus_8151#1 ------------------------------------------------------------ consensus_8151#0 TAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAA 120 consensus_8151#1 ------------------------------------------------------------ consensus_8151#0 TGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAA 180 consensus_8151#1 ------------------------------------------------------------ consensus_8151#0 ACTTTGCACTTGCTTCCTGAGAGAAAACGACCGGTTCCGCTGTAGCATTGATTTCTGTAC 240 consensus_8151#1 ------------------------------------------------------------ consensus_8151#0 CTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGA 300 consensus_8151#1 ------------------------------------------------------------ consensus_8151#0 GAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTT 360 consensus_8151#1 ------------------------------------------------------------ consensus_8151#0 GTCCTGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGAT 420 consensus_8151#1 ------------------------------------------------------------ consensus_8151#0 TAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATCAGCAGAATCCT 480 consensus_8151#1 -------------------------GAATCGAGCTATGGGCTTTTGATCAGCAGAATCCT 35 *********************************** consensus_8151#0 GCAACAAAATGTAGCTAGTAACAAAAAAACTAGAGCCAGCGAACAGAAAGAAGAAATCAT 540 consensus_8151#1 ANAACGAAATGTAGCTAGTAACAAAAAAA------------------------------- 64 *** *********************** consensus_8151#0 GAAGTAATTGTATTTCAAGAGATCTGATTACACTACACAGCAAAACCAAGTTTTCTCAAA 600 consensus_8151#1 -------------------------------ACTACACAGCAAAACCAAGTTTTCTCAAA 93 ***************************** consensus_8151#0 CATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCAC 660 consensus_8151#1 CATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCAC 153 ************************************************************ consensus_8151#0 TGATCACGCTTGAGACGTGCTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCG 720 consensus_8151#1 TGATCACGCTTGAGACGTGTTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCG 213 ******************* **************************************** consensus_8151#0 TTGTCCAAAGGTATTTTTGAAGCACGCTGACTGTTCAGTTTCTCCATGCTCGATG---- 775 consensus_8151#1 TTGTCCAAAGGTATTTTTGAAGCAGACTGACTGTTCACCTCGTGCCGAATCTTGGCCGC 272 ************************ *********** * * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||