These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 430 fasta sequence [ACGTGGTGCTCCCCTCGTGGCTAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTCCATGGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCAGCAGCGGCGGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGATGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAGAATATATTGGA] [+] EMBL AI977611 [ACGTGGTGCTCCCCTCGTGGCTAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTCCATGGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCAGCAGCGGCGGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGATGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAGAATATATTGGA] [-] EMBL CD146149 [ TCCCCTCGTGGCTAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATT ] [+] EMBL AI977728 [ TAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGCTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTCCATGGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCAGCAGCGGCGGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGATGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAGAATATATTGGA] [+] EMBL CD137823 [ AAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTCCATGGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCGGCAGCGGCGGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGATGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAGAATATA ] [-] EMBL CD146205 [ GGCTTATAGCAGCTAACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTGTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATT ] consensusID : consensus_8174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [TATTCTGTACATAAGATGCAATTAACCGACAAGTCAAAGCCATCGGTCATCAGATTCATCATCAGAACTGTTCGGCTCGTTGCAGTCTTACGGTCGACACACGCGTGCTGCACGGGCGACGTCGGCGCGACGACGGCGCACACAGAGGCAGCAGCCATGCATCATAGATCGCTCATGCTGCTCAGGCGTCAAGTGAGTA] [+] EMBL SMAA69265 [TATTCTGTACATAAGATGCAATTAACCGACAAGTCAAAGCCATCGGTCATCAGATTCATCATCAGAACTGTTCGGCTCGTTGCAGTCTTACGGTCGACACACGCGTGCTGCACGGGCGACGTCGGCGCGACGACGGCGCACACAGAGGCAGCAGCCATGCATCATAGATCGCTCATGCTGCTCAGGCGTCAAGTGAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8174#0 ACGTGGTGCTCCCCTCGTGGCTAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAA 60 consensus_8174#1 ------------------------------------------------------------ consensus_8174#0 AGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACA 120 consensus_8174#1 ------------------------------------------------------------ consensus_8174#0 GCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTT 180 consensus_8174#1 ------------TATTCTGTAC-ATAAGATGCAATTAACCGACAAGTCAAAGC-CATCGG 46 ** * ** * * * * *** * * * ** ** * *** consensus_8174#0 CCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTC-CAT 239 consensus_8174#1 TCATCAGATTCATCATCAGAACTGTTCGGCT----CGTTGCAGTCTTACGGTCGACACAC 102 ** ** ** * * ** *** ** ** ** * * * ** consensus_8174#0 GGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCAGCAGCGGC 299 consensus_8174#1 GCG---TGCTGCACGGGC-GACGTCGGCGCGACGACGGCGCACACAGAGGCAGCAGCCAT 158 * * ******** * * ** * *** ***** ** * *** ********* consensus_8174#0 GGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGA 359 consensus_8174#1 GCATCATAG-ATCGCTCATGCTGCTCAGGCGTCAAGTGAGTA------------------ 199 * * * * ** * * * * * *** ** * consensus_8174#0 TGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAG 419 consensus_8174#1 ------------------------------------------------------------ consensus_8174#0 AATATATTGGA 430 consensus_8174#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||