These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 421 fasta sequence [AGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTT-ACTGTCCGTTTCCTTACTCAACCATT--AGATGTTATAAAAATTCGCTTTC-AATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTA] [+] EMBL CD163201 [AGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTTAACTGTCCGGTTCCTTACTCAAACATTTAAGATGTTATAAAAATTCGCTTTCAAATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGGCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTT ] [-] EMBL CD163523 [AGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAACTTAATTGCTGGAAGCTTGTCCGGTTTT ACTGTCCGTTTCCTTACTCGACCATT AGATGTTATAAAAATTCGCTTTC AATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTA] [-] EMBL CD163153 [ GAGGACATCCTTATAAATTCCAAAACCCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGGTACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTT ACTGTCCGTTTCCTTACTCAACCATT AGATGTTATAAAAATTCGCTTTC AATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTA] [-] EMBL CD163462 [ GAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTCACCCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTT ACTGTCCGTTTCCTTACTCAACCATT AGATGTTATAAAAATTCGCTTTC AATTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTA] consensusID : consensus_8176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [CTCTATTTCTAATTGTCAGTTATGAGGTGATATATCAGTAGTTAACCGTATACTAAACGATAATTTTGATTCTAATGTTTTATTTTCCAACCAAGAGTGATCTTCTGAGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTAGATCTTCATATTACTGCAAATCATGAGGATTAACACAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGA] [-] EMBL CD110950 [CTCTATTTCTAATTGTCAGTTATGAGGTGATATATCAGTAGTTAACCGTATACTAAACGATAATTTTGATTCTAATGTTTTATTTTCCAACCAAGAGTGATCTTCTGAGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTTTTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCAGGTTAGATCTTCATATTACTGCAAATCATGAGGATTAACACAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGA] consensusID : consensus_8176#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [ATTGCTGGAAGCTTGTCCGGTTTTACTGTCCGTTTCCTTACTCAACCATTAGATGTTATAAAAATTCGCTTTCAAGTGAGTTTTTTAATTCTATGCTTGTGCTAAAAACAACTATAATTCAGTTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTACATTT] [+] EMBL CD139717 [ATTGCTGGAAGCTTGTCCGGTTTTACTGTCCGTTTCCTTACTCAACCATTAGATGTTATAAAAATTCGCTTTCAAGTGAGTTTTTTAATTCTATGCTTGTGCTAAAAACAACTATAATTCAGTTACAAGTTGAAGATATTAAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCATTTATCCGTATTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTTCTGTTACATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8176#0 AGAGGACATCCTTATAAATTCCAAAAACCGAGATCAAATCGTCTACGTCTGAAGTTTCTT 60 consensus_8176#2 ------------------------------------------------------------ consensus_8176#1 ------------------------------------------------------------ consensus_8176#0 TTACGTAGAGTCGTGAGTTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTAT 120 consensus_8176#2 ------------------------------------------------------------ consensus_8176#1 ---------------------------------------------------CTCTATTTC 9 consensus_8176#0 TGATACGTTTAAATCCAGGTTGCTCGACCTCCTGTCCTTACCGCTGAAGACTGAGTC-AC 179 consensus_8176#2 ---------------------------------------ATTGCTGGAAGCTTGTCC-GG 20 consensus_8176#1 TAATTGTCAGTTATGAGGTGATATATCAGTAGTTAACCGTATACTAAACGATAATTTTGA 69 ** * * consensus_8176#0 CCAAAGTATGAAAAATGATACAAAAAATTTAATTGCTGGAAGCTTGTCCGGTTTTACTGT 239 consensus_8176#2 TTTTACTGTCCGTTTCCTTACTCAACCATTAGATGTTATAAA--AATTCGCTTTCAA-GT 77 consensus_8176#1 TTCTAATGTTTTATTTTCCAACCAAGAGTGATCTTCTGAGAGGACATCC-TTATAAATTC 128 * * * * ** * * * * * * * * * * consensus_8176#0 CCGTTTCCTTACTCAACCATTAGATGTTATAAA-AATTCGCTTTCAATTACAAGTTGAAG 298 consensus_8176#2 GAGTTTTTTAATTCTATGCTT--GTGCTAAAAACAACTATAATTCAGTTACAAGTTGAAG 135 consensus_8176#1 CAAAAACCGAGATCAAATCGTCTACGTCTGAAG----TTTCTTTTACGTAGAGTCGTGAG 184 ** * * * ** * ** * ** * ** consensus_8176#0 ATATT-AAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCA--TTTATCCGTA 355 consensus_8176#2 ATATT-AAGCCCTCAGGAAAATCATATTACACTGGCCTACTACAGGCA--TTTATCCGTA 192 consensus_8176#1 TTACTGAAGTTCTCTGACAGAACACATCATCAGCACCTTCTATTGATACGTTTAAATCCA 244 ** * *** *** * * * ** ** * *** *** * * **** * consensus_8176#0 TTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTT 415 consensus_8176#2 TTTACAAAGAAGAAGGTGTATATGGTCTGTGGAAGGGTCATGTGCCAGCACAATTTCTTT 252 consensus_8176#1 GGTTAGATCTTCATATTACTGCAAATCATGAGGATTAACACAGGTT-GCTCGACCTCCTG 303 * * * * ** * * ** * ** * * ** * consensus_8176#0 CTGTTA---------- 421 consensus_8176#2 CTGTTACATTT----- 263 consensus_8176#1 TCCTTACCGCTGAAGA 319 *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||