cluster # 8179

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8179 cluster # 8179 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8179#0 length = 667 sequences # 3

consensus_8179#1 length = 319 sequences # 3

consensusID : consensus_8179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 667
fasta sequence

                              [ATAATCAAACCGTAGTTTATTCATGGATCCAAGGGTCAACGGCTTGTTTATATTGACATAGTTCTTGTGGAGAAAACCATAAGTTGATTTCCCTGTTAGCACTTTCAGTTGAGTCGGATCCATGGACAACATTTCTCCCTACATCTTGGCAGTAGTCTCCCCTTATTGATCCAGGACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAAGTGATGAGCGTTTGCCAGATGAATGATGACTATGACTGTGATAGCGATGATGATCTGAATGATGAGAGCGATGACGTTCTGGGTGTTTATGTAAAGTATGCCTTTGATATTGGTGTTCTGATGCATGGCGTTTATGGTGACTATCTCTTGATCCTGAAATGCAACGATGACAGTAACAAGTTTGATGACGATAGTAACCATGCTGTTTATGAA]

[-] EMBL CD143934             [ATAATCAAACCGTAGTTTATTCATGGATCCAAGGGTCAACGGCTTGTTTATATTGACATAGTTCTTGTGGAGAAAACCATAAGTTGATTTCCCTGTTAGCACTTTCAGTTGAGTCGGATCCATGGACAACATTTCTCCCTACATCTTGGCAGTAGTCTCCCCTTATTGATCCAGGACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACCAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCC                                                                                                                                                                                                                                                                 ]
[-] EMBL CD143941             [ TAATCAAACCGTAGTTTATTCATGGATCCAAGGGTCAACGGCTTGTTTATATTGACATAGTTCTTGTGGAGAAAACCATAAGTTGGTTTCCCTGTTAGCACTTTCAGTTGAGTCGGATCCATGGACAACATTTCTCCCTACATCTTGGCAGTAGTCTCCCCTTATTGATCCAGGACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCC                                                                                                                                                                                                                                                                 ]
[+] EMBL CD180390             [                                                                                                                                                                                                              ATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAAGTGATGAGCGTTTGCCAGATGAATGATGACTATGACTGTGATAGCGATGATGATCTGAATGATGAGAGCGATGACGTTCTGGGTGTTTATGTAAAGTATGCCTTTGATATTGGTGTTCTGATGCATGGCGTTTATGGTGACTATCTCTTGATCCTGAAATGCAACGATGACAGTAACAAGTTTGATGACGATAGTAACCATGCTGTTTATGAA]




>consensus_8179#0
ATAATCAAACCGTAGTTTATTCATGGATCCAAGGGTCAACGGCTTGTTTATATTGACATA
GTTCTTGTGGAGAAAACCATAAGTTGATTTCCCTGTTAGCACTTTCAGTTGAGTCGGATC
CATGGACAACATTTCTCCCTACATCTTGGCAGTAGTCTCCCCTTATTGATCCAGGACAAC
TTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTT
CAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATG
AAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCT
TTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGAC
CTCGTTGCACGCCATCAGGTTTGACCATAATAAAGTGATGAGCGTTTGCCAGATGAATGA
TGACTATGACTGTGATAGCGATGATGATCTGAATGATGAGAGCGATGACGTTCTGGGTGT
TTATGTAAAGTATGCCTTTGATATTGGTGTTCTGATGCATGGCGTTTATGGTGACTATCT
CTTGATCCTGAAATGCAACGATGACAGTAACAAGTTTGATGACGATAGTAACCATGCTGT
TTATGAA

consensusID : consensus_8179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 319
fasta sequence

                              [ACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAACGTCCGTTCCATGATGAGATAACAACCTCAAATAAATTTG]

[-] EMBL CD137986             [ACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAACGTCCGTTCCATGATGAGATAACAACCTCAAATAA     ]
[-] EMBL CD138072             [ACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAACGTCCGTTCCATGATGAGATAACAACCTCAAATAA     ]
[-] EMBL CD098011             [   ACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAACGTCCGTTCCATGATGAGATAACAACCTCAAATAAATTTG]




>consensus_8179#1
ACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACG
CCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAA
AAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCAT
CATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAAC
AAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAACGTCCGTTCCATGATGAGATA
ACAACCTCAAATAAATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8179#0      ATAATCAAACCGTAGTTTATTCATGGATCCAAGGGTCAACGGCTTGTTTATATTGACATA 60
consensus_8179#1      ------------------------------------------------------------
                                                                                  

consensus_8179#0      GTTCTTGTGGAGAAAACCATAAGTTGATTTCCCTGTTAGCACTTTCAGTTGAGTCGGATC 120
consensus_8179#1      ------------------------------------------------------------
                                                                                  

consensus_8179#0      CATGGACAACATTTCTCCCTACATCTTGGCAGTAGTCTCCCCTTATTGATCCAGGACAAC 180
consensus_8179#1      -------------------------------------------------------ACAAC 5
                                                                             *****

consensus_8179#0      TTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTT 240
consensus_8179#1      TTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTT 65
                      ************************************************************

consensus_8179#0      CAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATG 300
consensus_8179#1      CAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATG 125
                      ************************************************************

consensus_8179#0      AAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCT 360
consensus_8179#1      AAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCT 185
                      ************************************************************

consensus_8179#0      TTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGAC 420
consensus_8179#1      TTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGAC 245
                      ************************************************************

consensus_8179#0      CTCGTTGCACGCCATCAGGTTTGACCATAATAAAGTGATGAGCGTTTGCCAGATGAATGA 480
consensus_8179#1      CTCGTTGCACGCCATCAGGTTTGACCATAATAAA----CGTCCGTTCCATGATGAGATAA 301
                      **********************************     *  ****          ** *

consensus_8179#0      TGACTATGACTGTGATAGCGATGATGATCTGAATGATGAGAGCGATGACGTTCTGGGTGT 540
consensus_8179#1      CAACCTCAAATAAATTTG------------------------------------------ 319
                        **    * *    * *                                          

consensus_8179#0      TTATGTAAAGTATGCCTTTGATATTGGTGTTCTGATGCATGGCGTTTATGGTGACTATCT 600
consensus_8179#1      ------------------------------------------------------------
                                                                                  

consensus_8179#0      CTTGATCCTGAAATGCAACGATGACAGTAACAAGTTTGATGACGATAGTAACCATGCTGT 660
consensus_8179#1      ------------------------------------------------------------
                                                                                  

consensus_8179#0      TTATGAA 667
consensus_8179#1      -------