These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 790 fasta sequence [GGACGTATTAATGTTGTGTTGCTTCTATGTTTCAGGATAATAATTCTTCTCCCCTAATATGCTTGTCGAAGATTGTCCT-CAGCAGCATACCTTCCGGGTGGAAGGTTACGTCTCAATTAAATAATTGCTTCAAGTTGTTTTCAAACATTTTACCTTTCTCATCACCATTGGAATTGGAGTATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAAAACTATCTATGGAACGTTCGCTTACTACGAAATATC-AAATAAGTTGAAACAACTGATGTTTCGGAAGGAACTGTCGCTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCATTGCTTGCTTGGCCTACCTTCAGCATTATTTCAACAGTTTATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGAAATTCCGGGGCTTTGCAGACTGTTTTTAGTTTTTTAGCTGATCCACACGTTTTCAACAAACTATATGAAACATGCAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTCTATGGTGTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTGAACCGCATGCATTATCGAATAATTTGGTTNTAAACTTACATGAAGTTCTCACTCGAGCTCCCCGGTTAAAACGCAATGCAGCCCCAGAAGTAATAGCTGCTGCGTTGCTTGG] [+] EMBL CD098154 [GGACGTATTAATGTTGTGTTGCTTCTATGTTTCAGGATAATAATTCTTCTCCCCTAATATGCTTGTCGAAGATTGTCCT CAGCAGCATACCTTCCGGGTGGAAGGTTACGTCTCAATTAAATAATTGCTTCAAGTTGTTTTCAAACATTTTACCTTTCTCATCACCATTGGAATTGGAGTATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAAAACTATCTATGGAACGTTCGCTTACTACGAAATATC NAATAAGTTGAAACAACTGATGTNTCGGAAGG ] [-] EMBL CD195579 [ ggAGATGTTCCTACAGCAGCATACCTTCCGGGTGGAAGGTTACGTCTCAATTAAATAACTGCTTCAAGTTGTTTTCAAACATTTTACCTTTCTCATCACCATTGGAATTGGAGTATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAAAACTATCTATGGAACGTTCGCTTACTACGAAATATCAAAATAAGTTGAAACAACTGATGTTTCGGAAGGAACTGTCGCTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCATTGCTTGCTTGGCCTACCTTCAGCATTATTTCAACAGTTTATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGAAATTCCGGGGCTTTGCAGACTGTTTTT ] [-] EMBL CD187360 [ TACCTTTCTCATCACCATTGGAATTGGAGTATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAANACTATCTATGGAACGTTCGCTTACTACGAAATATC AAATAAGTTGAAACAACTGATGTTTCGGAAGGAACTGTCGCTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCATTGCTTGCTTGGCCTACCTTCAGCATTATTTCAACAGTTTATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGAAATTCCGGGGCTTTGCAGACTGTTTTTAGTTTTTTAGCTGATCCACACGTTTTCAACAAACTATA ] [+] EMBL CD153801 [ CGAAATATC AAATAAGTTGAAACAACTGATGTTTCGGAAGGAACTGTCGCTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCATTGCTTGCTTGGCCTACCTTCAGCATTATTTCAACAGTTTATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGCAATTCCGGGGCTTTGCAGACTGTTTTTAGTTTTTTAGCTGATCCACACGTTTTCAACAAACTATATGAAACATGCAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTCTATGGTGTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTGAACCGCATGCATTATCGAATAATTTGGTTNTAAACTTACATGAAGTTCTCACTCGAGCTCCCCGGTTAAAACGCAATGCAGCCCCAGAAGTAATAGCTGCTGCGTTGCTTGG] [+] EMBL CD157818 [ TTGCTTGCTTGGCCTACCTTCAGCATTACTTCAACAGTTAATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGCAATTCCGGGGCTTAGCAGACTGTTTTTAGTATTTTAGCTGATCCACACGTTTTCAACAAACTATATGAAACATGCAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATACTCATTTCTATGGTGTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTGAACCGCATGCATTATCGAATAATTTGGTTTTAAACTTACATGAAGTTCTCACTCGAACTTCCCGGAT AAACGCAAT ] consensusID : consensus_8195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [CAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTCTATGGTGTTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTCACCACGATGCATTCTCGCATAACTGGGGTTTAAACTCACACGAAGTTCTCACTCCGAGCTCCCCAGTTCGAATGCAGAGCAGCCCCATGAATGTTATATCTCCTGCATAGCATGGTGCTTAAACTGTGCATAACTGTCATGTGCGAGCGCTCCGATTACCATCATAGCATGACGAAGCGGTTCGGAGTGCTCGATGTGACTGTACCTTCTTTTTTCACTCTAACGAAATTCCCTCCGTTGCTCGAGCCACGTGTAAGCATTTGACGCGCATGCGCATATCGCATCGAGCCGTGTACGCGCTACACCATGTACTTCGTACCTGTAGATCACTGGTCTCCACATCATG] [-] EMBL CD128209 [CAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTCTATGGTGTTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTCACCACGATGCATTCTCGCATAACTGGGGTTTAAACTCACACGAAGTTCTCACTCCGAGCTCCCCAGTTCGAATGCAGAGCAGCCCCATGAATGTTATATCTCCTGCATAGCATGGTGCTTAAACTGTGCATAACTGTCATGTGCGAGCGCTCCGATTACCATCATAGCATGACGAAGCGGTTCGGAGTGCTCGATGTGACTGTACCTTCTTTTTTCACTCTAACGAAATTCCCTCCGTTGCTCGAGCCACGTGTAAGCATTTGACGCGCATGCGCATATCGCATCGAGCCGTGTACGCGCTACACCATGTACTTCGTACCTGTAGATCACTGGTCTCCACATCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8195#0 GGACGTATTAATGTTGTGTTGCTTCTATGTTTCAGGATAATAATTCTTCTCCCCTAATAT 60 consensus_8195#1 ------------------------------------------------------------ consensus_8195#0 GCTTGTCGAAGATTGTCCTCAGCAGCATACCTTCCGGGTGGAAGGTTACGTCTCAATTAA 120 consensus_8195#1 ------------------------------------------------------------ consensus_8195#0 ATAATTGCTTCAAGTTGTTTTCAAACATTTTACCTTTCTCATCACCATTGGAATTGGAGT 180 consensus_8195#1 ------------------------------------------------------------ consensus_8195#0 ATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAAAACTATCTATGGAACGT 240 consensus_8195#1 ------------------------------------------------------------ consensus_8195#0 TCGCTTACTACGAAATATCAAATAAGTTGAAACAACTG-ATGTTTCGGAAGGAACTGTCG 299 consensus_8195#1 ------------------CAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAG 42 ** * * ** ** ** ** ** * * * * * * consensus_8195#0 CTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCAT 359 consensus_8195#1 ---------TCATTTCTATGGTGTTTAGCGGGGCAAACACTGAGGTCAACCAATACATAA 93 **** * * * ** * ** * * * * ** ** * consensus_8195#0 TGCTTGCTTGGCCTACCTTCAGCATTATTT--CAACAGTTTATCATTATTAGTTTTTGTA 417 consensus_8195#1 -ACATAGTTTTTAAACATTCAG-ATTATTCTCCACTTGTTCACCACGATGCATTCTCGCA 151 * * ** ** ***** ****** ** *** * ** ** ** * * * consensus_8195#0 TATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGAAATT 477 consensus_8195#1 TA-ACTGGGGTTTAAACTCACACGAAGT-TCTCACTCCG-AGCTCCCCAG--------TT 200 ** ***** * ** **** * * * * *** * ** *** ** ** consensus_8195#0 CCGGGGCTTTGCAGACTGTTTTTAGTTTTTTAGCTGATCCACA-CGTTTTCAACAAACTA 536 consensus_8195#1 CGAATGCAGAGCAGCCC--CATGAATGTTATATCTCCTGCATAGCATGGTGCTTAAACTG 258 * ** **** * * * * ** ** ** * ** * * * * ***** consensus_8195#0 TATGAAACATGCAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTC 596 consensus_8195#1 TGCATAACTGTCA----TGTGCGAGCGCTCCGATTACCATCATAGCATGACGAAGCGGTT 314 * *** ** *** * ** * * ** * * *** * * consensus_8195#0 TATGGTGTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACAT 656 consensus_8195#1 CGGAGTGCTCGATGTGACTGTACCTTCTTTTTTCACTCTAACGAAATT-CCCTCCGTTGC 373 *** * * * * ** * ** * * * ** * consensus_8195#0 TCAGATTATTCTCCACTTGTTGAACCGCATGCAT-TATCGAAT-AATTTGGTTNTAAACT 714 consensus_8195#1 TCGAGCCACGTGTAAGCATTTGACGCGCATGCGCATATCGCATCGAGCCGTGTACGCGCT 433 ** * * **** ******* ***** ** * * * ** consensus_8195#0 TA--CATGAAGTTCTCACTCG-AGCTCCCCGGTTAAAACGCAATGCAGCCCCAGAAGTAA 771 consensus_8195#1 ACACCATGTACTTCGTACCTGTAGATCACTGGTCTCCACATCATG--------------- 478 **** * *** ** * ** ** * *** ** *** consensus_8195#0 TAGCTGCTGCGTTGCTTGG 790 consensus_8195#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||