These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 790 fasta sequence [GGCTTTATATAGTCAGTTAGACGGCAGTAAAGTCGGCTTGGAAAAACTGGATACTGCCCTCGCTGAGTCACAAACATGTAGAAACAGACTCATCCAACTGGGCTCTTCATTGTCTGGTTTGTCCGGCTTATCTCAGCAGTTGCATGAGTTAAAAAATCTTTCAACTAAATACAGTCAACTTGGTGCTGCTATGGAAAATATGAGTTATCTTGTGAAGGCACCTGAAACATTTGAACAGGCTCGAACTTATCTGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACCGATGTTTGAAGTGTATCGACANAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAGTATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAAAAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGATTTGAAAATAGCAAAAAATATATGTCCAACATATTTTCCAGCAGATTATGCTATATTTGACCGATTTGCTGAAATGTAT] [+] EMBL CD181246 [GGCTTTATATAGTCAGTTAGACGGCAGTAAAGTCGGCTTGGAAAAACTGGATACTGCCCTCGCTGAGTCACAAACATGTAGAAACAGACTCATCCAACTGGGCTCTTCATTGTCTGGTTTGTCCGGCTTATCTCAGCAGTTGCATGAGTTAAAAAATCTTTCAACTAAATACAGTCAACTTGGTGCTGCTATGGAAAATATGAGTTATCTTGTGAAGGCACCTGAAACATTTGAACAGGCTCGAACTTATCTGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACCGATGTTTGAAGTGTATCGACANAAGTCTATGGAAGATTTAGATACATTGCGTG ] [+] EMBL CD064949 [ GTCAACTTGGTGCTGCTATGGAAAATATGAGTTATCTTGTGAAGGCACCTGAAACATTTGAACAGGCTCGAACTTATCTGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGGAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAGTATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAAAAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGATTTGAAAATAGCAAAAAATATATGTCCAACATATTTTCCAGCAGATTATGCTATATTTGACCGATTTGCTGAAATGTAT] consensusID : consensus_8197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [GAGTATCCCATGCAATCTCGGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAGTATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAAAAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGA] [+] EMBL CD061831 [GAGTATCCCATGCAATCTCGGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAGTATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAAAAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGA] consensusID : consensus_8197#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 459 fasta sequence [TGGAATCAGAAAATCTCTTAGAAGGTCATGAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGTATTAACTTACATCCACATATTATACTCAAATTTCATCGAAACGTTTCTGATATAAAGTATCGGTATTCATCTTGTTTTACATAATTAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATTGTTTTATGCCAGATGGACGACCGANACAATGGAAAAACTGTTATCGACAGTATATTTAATGCTATAAAAAATA] [+] EMBL CD148885 [TGGAATCAGAAAATCTCTTAGAAGGTCATGAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGTATTAACTTACATCCACATATTATACTCAAATTTCATCGAAACGTTTCTGATATAAAGTATCGGTATTCATCTTGTTTTACATAATTAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATTGTTTTATGCCAGATGGACGACCGANACAATGGAAAAACTGTTATCGACAGTATATTTAATGCTATAAAAAATA] [+] EMBL CD148902 [TGGAATCAGAAAATCTCTTAGAAGGTCATGAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGTATTAACTTACATCCACATATTATACTCAAATTTCATCGAAACGTTTCTGATATAAAGTATCGGTATTCATCTCG TTTACATAATTAGAA ] [+] EMBL CD148934 [TGGAATCAGAAAATCTCTTATAAGGTCATGAACTAATGCACGATTTGGAAGGGATTCTAGATGAACTGATGTTTGAAGTGTATCTACAAAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8197#0 GGCTTTATATAGTCAGTTAGACGGCAGTAAAGTCGGCTTGGAAAAACTGGATACTGCCCT 60 consensus_8197#1 ------------------------------------------------------------ consensus_8197#2 ------------------------------------------------------------ consensus_8197#0 CGCTGAGTCACAAACATGTAGAAACAGACTCATCCAACTGGGCTCTTCATTGTCTGGTTT 120 consensus_8197#1 ------------------------------------------------------------ consensus_8197#2 ------------------------------------------------------------ consensus_8197#0 GTCCGGCTTATCTCAGCAGTTGCATGAGTTAAAAAATCTTTCAACTAAATACAGTCAACT 180 consensus_8197#1 ------------------------------------------------------------ consensus_8197#2 ------------------------------------------------------------ consensus_8197#0 TGGTGCTGCTATGGAAAATATGAGTTATCTTGTGAAGGCACCTGAAACATTTGAACAGGC 240 consensus_8197#1 ----------------------------------------------------GAGTATCC 8 consensus_8197#2 ------------------------------------------------------------ consensus_8197#0 TCGAACTTATCTGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGA 300 consensus_8197#1 CATGCAATCTCGGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGA 68 consensus_8197#2 -----------TGGAATCAGAAAATCTCTTAGAAGGTCATGAACTAATGCAGGATTTGGA 49 **************************** ******************* consensus_8197#0 AGGGATTCGAGATGAACCGATGTTTGAAGTGTATCGACANAAGTCTATGGAAGATTTAGA 360 consensus_8197#1 AGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGA 128 consensus_8197#2 AGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGA 109 ***************** ********************* ******************** consensus_8197#0 TACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAAT 420 consensus_8197#1 TACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAAT 188 consensus_8197#2 TACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAAT 169 ************************************************************ consensus_8197#0 AATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAA 480 consensus_8197#1 AATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAA 248 consensus_8197#2 AATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAA 229 ************************************************************ consensus_8197#0 TTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGA 540 consensus_8197#1 TTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGA 308 consensus_8197#2 TTGTGTACGTGTTATTGATCGTGAAGAAAGTATTAACTTACATCCACATATTATACTCAA 289 ****************************** * * * ** * * * * consensus_8197#0 GAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAG 600 consensus_8197#1 GAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAG 368 consensus_8197#2 ATTTCATCGAAACGTTTCTGATATAAAGTATCGGTATTC----ATCTTGTTTTACATAAT 345 *** * * * *** * * * * **** * * * consensus_8197#0 TATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAA 660 consensus_8197#1 TATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAA 428 consensus_8197#2 TAGAACTGATGCTA-ATTGGCGGAAACGATCAGAGAAACATTGTTTTATGCCAGATGGAC 404 ** * * ****** * * * * ** ** * *** * * consensus_8197#0 AAATAAATTAGTTCGACACAATGAAGCCATTAG-ACAGCATACGCTAGCAGATTTGAAAA 719 consensus_8197#1 AAATAAATTAGTTCGACACAATGAAGCCATTAG-ACAGCATACGCTAGCAGA-------- 479 consensus_8197#2 GACCGANACAATG-GAAAAACTGTTATCGACAGTATATTTAATGCTATAAAAAATA---- 459 * * * * ** * * ** * ** * * * **** * * consensus_8197#0 TAGCAAAAAATATATGTCCAACATATTTTCCAGCAGATTATGCTATATTTGACCGATTTG 779 consensus_8197#1 ------------------------------------------------------------ consensus_8197#2 ------------------------------------------------------------ consensus_8197#0 CTGAAATGTAT 790 consensus_8197#1 ----------- consensus_8197#2 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||