These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1037 fasta sequence [AATGGGGCGATTGGATAAACATTTATTTGATAAGAAGATGCGGAAATTAAAACTATTCTATCTATGTGTGTGAATATATGATGCCGGTGGGGAATTCAAAGAAGATACAGAAAGACCAATGCCAAATGAATCTGTGGACGGATAAGAGACTACGTGAGATAAATCTATGCTTCTGTGTATATTTCGTTATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGATGCACAAGACCTCTGTTTGCGAGCGACGGTAACTTAGGAGCAGAAAAGGATCATCAATTACAACATCAACAGGTCTACTAGTAACAAACTAAATTATAC-AAATCTG-TCAAGAGTTA-GAAACAA-GCACA-TTAAGAAA-TATTTTCAGAGAACGAAGTGACGAAACAGATTAGTGATGAACAAACAACTGAGCAATAACAACTTCAGACATCTTTATGCAAACATAAACGACAGGATCAGTATATTTTAATTGTTTCCAATTCTTCAAAACCTTCCTTCTCTTAATACTACACATATAAAGGAATGGGAGAAAAGTGGAAAACTCTCCCATGGATGGAAGAAAACAATACATACACAAATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTCNCAAAAGTCAAACCAAAGACTAGTGTCACAAACGAAATTGAAAGACAAATTTGGAAGGAGAATAAATTGACAGCAAACAAGTGTGGATGTAATTGTTTTTCTGCCAGTGTGCATATATAGTGTGATACACAACACACCTTACCTAATAATGTGAAGAGAAATACATTATAATTATTGTATACTTTGCTTTTTTTATTAAGCCTGAGCAATACCATCTGACGCAGCAGAGGAGGTTGGCCTAGCACCACCAGCACTATGACATCTAGACAGAGGAGGATTGTTTGTAATGATTGAATCTAAACGATGATTAACAGTTGCTGTTGTTGTGGCATTATTGGTGGTAGTTTCTGAATTAAAAGAACCATTGAAGTGATGCGAG] [-] EMBL AI974229 [AATGGGGCGATTGGATAAACATTTATTTGATAAGAAGATGCGGAAATTAAAACTATTCTATCTATGTGTGTGAATATATGATGCCGGTGGGGAATTCAAAGAAGATACAGAAAGACCAATGCCAAATGAATCTGTGGACGGATAAGAGACTACGTGAGATAAATCTATGCTTCTGTGTATATTTCGTTATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGATGCACAAGACCTCTGTTTGCGAGCGACGGTAACTTAGGAGCAGAAAAGGATCATCAATTACAACATCAACAGGTCTACTAGTAACAAACTAAATTATACAAAATCTGTTCAAGAGTTATGAAACAATGCACATTTAAGAAATTATTTTC ] [-] EMBL CD094015 [ AAGGATCATCAATTACAACATCAACAGGTCTACTAGTAACAAACTAAATTATAC GAATCTG TCAAGAGTTA GAAACAA GCACA TTAAGAAA TATTTTCAGAGAACGAAGTGACGAAACAGATTAGTGATGAACAAACAACTGAGCAATAACAACTTCAGACATCTTTATGCAAACATAAACGACAGGATCAGTATATTTTAATTGTTTCCAATTCTTCAAAACCTTCCTTCTCTTAATACTACACATATAAAGGAATGGGAGAAAAGTGGAAAACTCTCCCATGGATGGAAGAAAACAATACATACACAAATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTC ] [-] EMBL CD139675 [ ancTCCTTCTCTTAATNCTNCACATATNAAGG AT GGAGAAAAGTGGAAAACTCTCNCATGGATGGAAGAAAACAATACATACACAAATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTCNCAAAAGTCAAACCAAAGACTAGTGTCACAAACGAAATTGAAAGACAAATTTGGAAGGAGAATAAATTGACAGCAAACAAGTGTGGATGTAATTGTTTTTCTGCCAGTGTGCATATATAGTGTGATACACAACACACCTTACCTAATAATGTGAAGAGAAATACATTATAATTATTGTATACTTTGCTTTTTTTATTAAGCCTGAGCAATACCATCTGACGCAGCAGAGGAGGTTGGCCTAGCACCACCAGCACTATGACATCTAGACAGAGGAGGATTGTTTGTAATGATTGAATCTA ] [+] EMBL CD178437 [ ATACACAAATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTCCCAAAAGTCAAACCAAAGACTAGTGTCACAAACGAAATTGAAAGACAAATTTGGAAGGAGAATAAATTGACAGCAAACAAGTGTGGATGTAATTGTTTTTCTGCCAGTGTGCATATATAGTGTGATACACAACACACCTTACCTAATAATGTGAAGAGAAATACATTATAATTATTGTATACTTTGCTTTTTTTATTAAGCCTGAGCAATACCATCTGACGCAGCAGAGGAGGTTGGCCTAGCACCACCAGCACTATGACATCTAGACAGAGGAGGATTGTTTGTAATGATTGAATCTAAACGATGATTAACAGTTGCTGTTGTTGTGGCATTATTGGTGGTAGTTTCTGAATTAAAAGAACCATTGAAGTGATGCGAG] consensusID : consensus_8208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 394 fasta sequence [ATGTGCAATGGTAGGTAGGTGGTAGTTTTTGAATTAAAAGAACCATTGAAGTGATGCGAGACACCGCTTGACGACATTCTTAATATAGCACCATCAGGGAAAGATGAAACGGGCATACAACCACTATCAGAACCAGTGGAAAGCATAATTGAATTGTTCATATATTTAAGAAAATCTGGATTAGTGAAATTTTTCACCAGTCCACCACCATTATTATCTTCCTTCACCATTGTATGTCGCGCAACACATGGGGTGTATTCTTCAATCGATTGTTGTTTAGACGATTTCACTGAAGGACGAGATAGTTGAAAGAAACAATGACGGCATACACGAACCGGTCCACTTGGTTGACTTGTTGTAACAATACGACGATCAGAACAATTTGCACAGAATA] [+] EMBL CD128015 [ATGTGCAATGGTAGGTAGGTGGTAGTTTTTGAATTAAAAGAACCATTGAAGTGATGCGAGACACCGCTTGACGACATTCTTAATATAGCACCATCAGGGAAAGATGAAACGGGCATACAACCACTATCAGAACCAGTGGAAAGCATAATTGAATTGTTCATATATTTAAGAAAATCTGGATTAGTGAAATTTTTCACCAGTCCACCACCATTATTATCTTCCTTCACCATTGTATGTCGCGCAACACATGGGGTGTATTCTTCAATCGATTGTTGTTTAGACGATTTCACTGAAGGACGAGATAGTTGAAAGAAACAATGACGGCATACACGAACCGGTCCACTTGGTTGACTTGTTGTAACAATACGACGATCAGAACAATTTGCACAGAATA] [-] EMBL CD195842 [ ACACCGCTTGACGACATTCTTAATATAGCACCATCAGGGAAAGATGAAACGGGCATACANCCACTATCAGAACCAGTGGAAAGCATAATTGAATTGTTCATATAATTAAGAAAATCTGGATTAGTGAAATTTTTCACCAGTCCACCACCATTATTATCTTCCTTCACCATTGTATGTCGCGCAACACATGGGGTGTATTCTTCAATCGATTGTTGTTTAGACGATTTCACTGAAGGACGAGATAGTTGAAAGAAACAATGACGGCATACACGAACCGGTCCACTTGGTTGACTTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8208#0 AATGGGGCGATTGGATAAACATTTATTTGATAAGAAGATGCGGAAATTAAAACTATTCTA 60 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 TCTATGTGTGTGAATATATGATGCCGGTGGGGAATTCAAAGAAGATACAGAAAGACCAAT 120 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 GCCAAATGAATCTGTGGACGGATAAGAGACTACGTGAGATAAATCTATGCTTCTGTGTAT 180 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 ATTTCGTTATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAG 240 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 AGATGCACAAGACCTCTGTTTGCGAGCGACGGTAACTTAGGAGCAGAAAAGGATCATCAA 300 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 TTACAACATCAACAGGTCTACTAGTAACAAACT--AAATTATACAAATCTGTCAAGAGTT 358 consensus_8208#1 -----ATGTGCAATGGTAGGTAGGTGGTAGTTTTTGAATTAAAAGAACCATTGAAGTGAT 55 * * * *** ** * * ***** * ** * * *** * * consensus_8208#0 AGAAACAAGCACATTAAGAAATATTTTCAGAGAACGAAGTGACGAAACAGATTAGTGATG 418 consensus_8208#1 GCGAGACACCGCTTGACGACAT-TCTTAATATAGCACCATCAGGGAA-AGATGA--AACG 111 * * * * * * ** ** * ** * * * * * * * ** **** * * * consensus_8208#0 AACAAACAACTGAGCAATAACAACTTCAGACATCTTTATGCAAACATAAACGACAGGATC 478 consensus_8208#1 GGCATACAAC----CACTATCAGAACCAGTG--------GAAAGCATAATTGAATTGTTC 159 ** ***** ** ** ** *** * ** ***** ** * ** consensus_8208#0 AGTATATTTTAATTGTTTCCAATTCTTCAAAACCTTCCTTCTCTTAATACTACACATATA 538 consensus_8208#1 A-TATATTTAAGAAAATCTGGATTAGTGAAATTTTTCACCAGTCCACCACCATTATTATC 218 * ******* * * *** * *** *** * ** * *** consensus_8208#0 AAGGAATGGGAGAAAAGTGGAAAACTCTCCCATGGATGGAAGAAAACAATACATACACAA 598 consensus_8208#1 ------TTCCTTCACCATTGTATGTCGCGCAACACATGGGGTGTATTCTTCAATCGATTG 272 * * * * * * * **** * * ** * consensus_8208#0 ATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTC 658 consensus_8208#1 TTGTTTAGACGATTTCACTGAAGGACGAGATAGTTGAA-AGAAACAATGACGGCATACAC 331 *** * ** * * ** ** * * * ***** ** ** * * * * consensus_8208#0 NCAAAAGTCAAACCAAA-GACTAGTGTCACAAACGAAATTGAAAGACAAATTTGGAAGGA 717 consensus_8208#1 GAACCGGTCCACTTGGTTGACTTGTTGTAACAATACGACGATCAGAACAATTTGCACAGA 391 * *** * **** ** * ** * *** ****** * ** consensus_8208#0 GAATAAATTGACAGCAAACAAGTGTGGATGTAATTGTTTTTCTGCCAGTGTGCATATATA 777 consensus_8208#1 ATA--------------------------------------------------------- 394 * consensus_8208#0 GTGTGATACACAACACACCTTACCTAATAATGTGAAGAGAAATACATTATAATTATTGTA 837 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 TACTTTGCTTTTTTTATTAAGCCTGAGCAATACCATCTGACGCAGCAGAGGAGGTTGGCC 897 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 TAGCACCACCAGCACTATGACATCTAGACAGAGGAGGATTGTTTGTAATGATTGAATCTA 957 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 AACGATGATTAACAGTTGCTGTTGTTGTGGCATTATTGGTGGTAGTTTCTGAATTAAAAG 1017 consensus_8208#1 ------------------------------------------------------------ consensus_8208#0 AACCATTGAAGTGATGCGAG 1037 consensus_8208#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||