These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 852 fasta sequence [CAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAATGGTCTGGAAATGTTTTAGTTGAAATATCACAAGCTTGAGTCATATTGGTAGAACTTTGTCGTAGCATCTGTTCACTGGCTAGAACAGCCGACCAAAATATGGCATTAGTACCAATAGTTTTAAAATACTCCGCCCATAAAGCTCTTTGTTTATTTGTGAGAAAGTCAGACTTATTAACAAGAACCACACATGTCTTGTTCGAATCAACTTCATGGATGTATCTATCTAAATCACTCGAATAATATAAAAGAGGCTGACGAGCATCGACCACCTGGACGACAACGTCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTACAGGAAAGCCAACGATCGTCTCCATTTCAAGAATTCTTCTTTTTCAAGATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTGAGTAAGTCTTCGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGTATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAAGAATTCATCTAAACCTGTTTATTCTGTGACTGAATGAACAGGTAAACGAGACCAATCCCCAGCAGTGTTTGTTCGAACTACATGACGCCCTGATCTTTCAGAAGGTTCTGATCCAATATGTTTAACAAGAGAGCGTCCGAGACCATGTTTTCTGCCCATGTAACGCACC] [+] EMBL CD163224 [CAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAATGGTCTGGAAATGTTTTAGTTGAAATATCACAAGCTTGAGTCATATTGGTAGAACTTTGTCGTAGCATCTGTTCACTGGCTAGAACAGCCGACCAAAATATGGCATTAGTACCAATAGTTTTAAAATACTCCGCCCATAAAGCTCTTTGTTTATTTGTGAGAAAGTCAGACTTATTAACAAGAACCACACATGTCTTGTTCGAATCAACTTCATGGATGTATCTATCTAAATCACTCGAATAATATAAAAGAGGCTGACGAGCATCGACCACCTGGACGACAACGTCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTACAGG ] [+] EMBL CD162881 [ GTCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTCCAGCAAAGCCAACGATCGTCTCCATTTCAAGAATTCTTCTTTTTCAAGATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTGAGTAAGTCTTCGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGTATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAAGAATTCATCTAAACCTGTTTATTCTGTGACTGAATGAACAGGTAAACGAGACCAATCCCCAGCAGTGTTTGTTCGAACTACATGACGCCCTGATCTTTCAGAAGGTTCTGATCCAATATGTTTAACAAGAGAGCGTCCGAGACCATGTTTTCTGCCCATGTAACGCACC] consensusID : consensus_8245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 488 fasta sequence [TTAAACCATCTTTTACTTGTGTATTTTGGGATTTAGGAAGGTTGATTCCATACATTGTCTCCAAAATATGACGTGGGATTCTTTCCCAAACTAAACCAACAGGAGCTAAATAATCACGCATCCCATCGATTGATAATATACCAGCTACAACTAAGTCTGCTCTACAGTAGGCAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAATGGTCTGGAAATGTTTGGTTTTCCCAGGTGTAACTGACACTGGAACCTTTTTATGACCTAGTATCGCATTGAGTGTACTAGATTTCCCGACGTTTGGGTAACCAATGAAGCCGACAGTCAAAGGATCTTTTGATTGACGACTGGATGGACTGTATTTTTCAGTTAATAAATTTATCAGCTCCTCAACTCCAACAAGCTTAGCCTCCGCCTCACCATTTTGTTTGGATTGAATAGATGTTTCAGCATCAATAACATCG] [+] EMBL CD066361 [TTAAACCATCTTTTACTTGTGTATTTTGGGATTTAGGAAGGTTGATTCCATACATTGTCTCCAAAATATGACGTGGGATTCTTTCCCAAACTAAACCAACAGGA ] [+] EMBL CD160289 [ CATTGTCTCCAAAATATGACGTGGAATTCTTTCACAAACTAAACCAACAGGAGCTAAATAATCACGCATCCCATCGATTGATAATATACCAGCTACAACTAAGTCTGCTCTACAGTAGGCAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAATGGTCTGGAAATGTTTGGTTTTCCCAGGTGTAACTGACACTGGAACCTTTTTATGACCTAGTATCGCATTGAGTGTACTAGATTTCCCGACGTTTGGGTAACCAATGAAGCCGACAGTCAAAGGATCTTTTGATTGACGACTGGATGGACTGTATTTTTCAGTTAATAAATTTATCAGCTCCTCAACTCCAACAAGCTTAGCCTCCGCCTCACCATTTTGTTTGGATTGAATAGATGTTTCAGCATCAATAACATCG] consensusID : consensus_8245#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [CGATTTCAGAGTTCTCCTCCAATTCTGTTGGGCGCGATGTTATTGATGCTGAAACATCTATTCAATCCAAACAAAATGGTGGGGNCGGAGGCTAAGCTTGTTGGAGTTGAGGAGCTGATAAATTTATTAACTGAAAAATACAGTCCATCCAGTCGTCAATCAAAAGATCCTTTGACTGNTCGGCTTCATTGGTTACCCAAACGTCGGGAAATCTAGTACACTCAACGCGATACTAGGTCATAAAAAGGTTCCAGTGTCAGTTACACCTGGGAAAACCAAACATTTCCAGGTAGATGTTTTATGCTCATTTTTGTCCGCAGTGACTAAAAAATTTCTTGTTCTTNTTGATGTTATTAATGAATTATTNTATTTTCTGGGCTTTTAGACCATTTATGTCCGATCAGACTTGATACTNTGTGATTGCCCGGGATTTGTAATGCCATCTTTTG] [+] EMBL CD181173 [CGATTTCAGAGTTCTCCTCCAATTCTGTTGGGCGCGATGTTATTGATGCTGAAACATCTATTCAATCCAAACAAAATGGTGGGGNCGGAGGCTAAGCTTGTTGGAGTTGAGGAGCTGATAAATTTATTAACTGAAAAATACAGTCCATCCAGTCGTCAATCAAAAGATCCTTTGACTGNTCGGCTTCATTGGTTACCCAAACGTCGGGAAATCTAGTACACTCAACGCGATACTAGGTCATAAAAAGGTTCCAGTGTCAGTTACACCTGGGAAAACCAAACATTTCCAGGTAGATGTTTTATGCTCATTTTTGTCCGCAGTGACTAAAAAATTTCTTGTTCTTNTTGATGTTATTAATGAATTATTNTATTTTCTGGGCTTTTAGACCATTTATGTCCGATCAGACTTGATACTNTGTGATTGCCCGGGATTTGTAATGCCATCTTTTG] consensusID : consensus_8245#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [TCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTCCAGCAAAGCCAACGATCGTCTCCATTTCAAGAATTCTTCTTTTTCAAGATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTGAGTAAGTCTTTGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGTATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTCTGAAAATGATATGATGGGGATTAAAAGCCTTACGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAAGAATTCATCTAAACCTG] [-] EMBL CD180714 [TCGCTACGTTCCACGACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCCATCTTTTTCTTCCAGCAAAGCCAACGATCGTCTCCATTTCAAGAATTCTTCTTTTTCAAGATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTGAGTAAGTCTTTGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGTATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTCTGAAAATGATATGATGGGGATTAAAAGCCTTACGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAAGAATTCATCTAAACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8245#0 CAAAAGATGGCATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATCGGACATAAA 60 consensus_8245#3 ------------------------------------------------------------ consensus_8245#1 ------------------------------------------------------------ consensus_8245#2 ------------------------------------------------------------ consensus_8245#0 TGGTCTGGAAATGTTTTAGTTGAAATATCACAAGCTTGAGTCATATTGGTAGAACTTTGT 120 consensus_8245#3 ------------------------------------------------------------ consensus_8245#1 ------------------------------------------------------------ consensus_8245#2 ------------------------------------------------------------ consensus_8245#0 CGTAGCATCTGTTCACTGGCTAGAACAGCCGACCAAAATATGGCATTAGTACCAATAGTT 180 consensus_8245#3 ------------------------------------------------------------ consensus_8245#1 ------------------------------------------------------------ consensus_8245#2 ------------------------------------------------------------ consensus_8245#0 TTAAAATACTCCGCCCATAAAGCTCTTTGTTTATTTGTGAGAAAGTCAGACTTATTAACA 240 consensus_8245#3 ------------------------------------------------------------ consensus_8245#1 ----------------------------------------------------TTAAACCA 8 consensus_8245#2 ------------------------------------------------------------ consensus_8245#0 AGAACCACACATGTCTTGTTCGAATCAACTTCATGGATGTATCTATCTAAATCACTCGAA 300 consensus_8245#3 ------------------------------------------------------------ consensus_8245#1 TCTTTTACTTGTGTATTTTGGGATTTAGGAAGGTTGATTCCATACATTGTCTCCAAAATA 68 consensus_8245#2 ------------------------------------------------------------ consensus_8245#0 TAATATAAAAGAGGCTGACGAGCATCGACCACCTGGACGACAACGTCGCTACGTTCCA-C 359 consensus_8245#3 ---------------------------------------------TCGCTACGTTCCA-C 14 consensus_8245#1 TGACGTGGGATTCTTTCCCAAACTAAACCAACAGGAGCTAAATAATCAC-GCATCCCATC 127 consensus_8245#2 CGATTTCAGAGTTCTCCTCCAATTCTGTTGGGCGCGATGTTATTGATGCTGAAACATCTA 60 * consensus_8245#0 GACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCC 419 consensus_8245#3 GACACGCCATAGCTGACGCCAGAACTCCAGATTCCGCTCAAAAGGAGTAAGAACGATGCC 74 consensus_8245#1 GATTGATAATATACCA-GCTACAACT---AAGTCTGCTCTACAGTAGGCAAAA-GATGGC 182 consensus_8245#2 TTCAATCCAAACAAAATGGTGGGGNCGGAGGCTAAGCT-TGTTGGAGTTGAGGAGCTGAT 119 * * * * * *** * ** * ** consensus_8245#0 ATCTTTTTCTTACAGGAAAGCCAACG-ATCGTCTCCATTTCAAGAATTCTTCTTTTTCAA 478 consensus_8245#3 ATCTTTTTCTTCCAGCAAAGCCAACG-ATCGTCTCCATTTCAAGAATTCTTCTTTTTCAA 133 consensus_8245#1 ATTACCAATCCCGGGCAATCACAAAGTATCAAGTCTGATC---GGACATAAATGGTCTGG 239 consensus_8245#2 AAATTTATTAACTGAAAAATACAGTCCATCCAGTCGTCAATCAAAAGATCCTTTGACTGN 179 * ** ** *** ** * * consensus_8245#0 GATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTG- 537 consensus_8245#3 GATTATCCAACGTATCAACTGACATTTCTGAACTCCACTTAGGTCTTCTGGGTATTTTG- 192 consensus_8245#1 AAATGTTTG--GTTTTCCCAGGTGTAACTGA----CACTGGAACCTTTTTATGACCT--- 290 consensus_8245#2 TCGGCTTCATTGGTTACCCAAACGTCGG-GAAATCTAGTACACTCAACGCGATACTAGGT 238 * * * * * ** * * * * consensus_8245#0 AGTAAGTCTTCGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGT 597 consensus_8245#3 AGTAAGTCTTTGTACATAATATGAACTTCTGAGATTTTAGAGCAGTCGGAGGAAGATGGT 252 consensus_8245#1 AGTATCGCATTGAGTGTACTA-GATTTCCCGACGTTT--GGGTAACCA-ATGAAGCCGAC 346 consensus_8245#2 CATAAAAAGGTTCCAGTGTCAGTTACACCTGGGAAAACCAAACATTTCCAGGTAGATGTT 298 ** * * * * * * * ** * consensus_8245#0 ATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCT-------------- 643 consensus_8245#3 ATGCCCATAATTTCGGATGGGGCAAGAAGCCTGATGTTCTTTTTCTCTGAAAATGATATG 312 consensus_8245#1 AGTCAAAGGATCTTTTGATTGACGACTGGATGGACTGTATTTTTCAGTTAA--TAAATTT 404 consensus_8245#2 TTATGCTCATTTTTGTCCGCAGTGACTAAAAAATTTCTTGTTCTTNTTGA---TGTTATT 355 * * * * ** * consensus_8245#0 --------------------GAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAA 683 consensus_8245#3 ATGGGGATTAAAAGCCTTACGAGCCTTGAATTCATGATTGGCAAGGTTGGCAATATTAAA 372 consensus_8245#1 ATCAGCTCCTCAACTCCAACAAGCTT--AGCCTCCGCCTCACCATTTTGTTTGGATTGAA 462 consensus_8245#2 AATGAATTATTNTATTTTCTGGGCTTTTAGACCATTTATGTCCGATCAGACTTGATACTN 415 ** * * * * * ** consensus_8245#0 GA-ATTCATCTAAACCTGTTTATTCTGTGACTGAATGAACAGGTAAACGAGACCAATCCC 742 consensus_8245#3 GA-ATTCATCTAAACCTG------------------------------------------ 389 consensus_8245#1 TA-GATGTTTCAGCATCAATAACATCG--------------------------------- 488 consensus_8245#2 TGTGATTGCCCGGGATTTGTAATGCCATCTTTTG-------------------------- 449 * consensus_8245#0 CAGCAGTGTTTGTTCGAACTACATGACGCCCTGATCTTTCAGAAGGTTCTGATCCAATAT 802 consensus_8245#3 ------------------------------------------------------------ consensus_8245#1 ------------------------------------------------------------ consensus_8245#2 ------------------------------------------------------------ consensus_8245#0 GTTTAACAAGAGAGCGTCCGAGACCATGTTTTCTGCCCATGTAACGCACC 852 consensus_8245#3 -------------------------------------------------- consensus_8245#1 -------------------------------------------------- consensus_8245#2 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||