These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 734 fasta sequence [TGAAAAATATGCCAGTTTATTAAAAGCTTACTTTACTCATCGTCTACAATTTACACCAGCTTTTCATCATAATCCCATACATAGAGAACTTGAAGAACATTACAAGGAAAGACTCGGTTGTTTAAGTGAAGATGCTGGTTATTTTAATGTTATCGGAAATCGTCTCATTCAAGTGATTAATAAAGCTTTATCATCTGGTAGACCGTATACTCTTAATCCAATTACTTTCACTTCTTCTATCAGTGATTTAAGTATGAGAGAACAATGTTTACATGCTTTACTACCTGGCAATGAAGTGAAGAATACTAAAATCCAGAAGAGGAAAACTACTAACGAACTTTGTAGAGTGGATGTTCTTTCCAATACTGATAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATAAGCAAAGAGATAATGAAAAATAAAGGCATTGTAAAATATCGACATAAACGTG-AACGT-ATCCTAGAGTGCATTTACGATATAAATACCGCAAGGCAA-CAATTCGTTACAGATCACGTGTTGCG-CCAG-TCGTAAAGAAGACAAA-CATATGCTGGTGAAGTAAAAGG-ATACGTGTAAATTTGATTAAATCGCACAATTTCAAAAATATTAA] [+] EMBL CD145587 [TGAAAAATATGCCAGTTTATTAAAAGCTTACTTTACTCATCGTCTACAATTTACACCAGCTTTTCATCATAATCCCATACATAGAGAACTTGAAGAACATTACAAGGAAAGACTCGGTTGTTTAAGTGAAGATGCTGGTTATTTTAATGTTATCGGAAATCGTCTCATTCAAGTGATTAATAAAGCTTTATCATCTGGTAGACCGTATACTCTTAATCCAATTACTTTCACTTCTTCTATCAGTGATTTAAGTATGAGAGAACAATGTTTACATGCTTTACTACCTGGCAATGAAGTGAAGAATACTAAAATCCAGAAGAGGAAAACTACTAACGAACTTTGTAGAGTGGATGTTCTTTCCAATACTGATAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATAAGCAAAGAGATAATGAAAAAT AAGGCATTGTAAAATATCGACATAAACGTGAAACGT ATCCTAGAGTGCATTTACGATATAAATATTGCAGGGCAANCATTTCGNTACAGATCACGTGTTGCGCCCAG TCGTAAAGAAGACAAA CATATGCTGGTGAAGTAAAAGG ATACGTGTAAATTTGATTAAATCGCACAATTTCAAAAATATTAA] [+] EMBL CD154199 [ ACACCAGCTTTTCATCATAATCCCATACATAGAGAACTTGAAGAACATTACAAGGAAAGACTCGGTTGTTTAAGTGAAGATGCTGGTTATTTTAATGTTATCGGAAATCGTCTCATTCAAGTGATTAATAAAGCTTTATCATCTGGTAGACCGTATACTCTTAATCCAATTACTTTTACTTCTTCTATCAGTGATTTAAGTATGAGAGAACAATGTTTACATGCTTTACTACCTGGCAATGAAGTGAAGAATACTAAAATCCAGAAGAGGAAAACTACTAACGAACTTTGTAGAGTGGATGTTCTTTCCAATACTGATAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCACGATCTACCAAATCGACCAATAAGCAAAGAGATAATGAAAAATAAAGGCACTGTAAAA ] [+] EMBL CD180860 [ GATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATAAGCAAAGAGATAATGAAAAATAAAGGCATCGTAAAATATCGACATAAACGTG AACGTAATCCTAGAGTGCATTTACGATATAAATACCGCAAGGCAA CAATTCGTTACAGATCACGTGTTGCG CCAGTTCGTAAAGAAGAC ] [+] EMBL CD138015 [ AAATCGACCAATAAGCAAAGAGATAATGAAAAATAAAGGCATTGTAAAATATCGACATAAACGTG AACGTAATCCTAGAGTGCATTTACGATATAAATACCGCAAGGCAA CAATTCGTTACAGATCACGTGTTGCG CCAGTTCGTAAAGAAGACAAACCATATGCTGGTGAAGTTAAAGGAATACGTG ] consensusID : consensus_8252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [CTACGAGACCAAGTGGCTAAATGTCAAACATCTTAACCACTAAGCCACCGATCCACTACATGAAATAAGAGTAGATGGAACTGCGGTACTGCAACAATTTTTCCGCAGCCGTAAATTGCAATCATTGCTCTGCTTTTTTTCAGTAAATCCCCACTTTGTGAGATCCCTGTCAAGACAGTCAATTACTTCATGGAATAGTGCCATGTGTTGGTTTACCTTCCTTTAACCTTTAGAAACCAGTCACTACTAAGATTATTCGACCTGAAGAATGTAGAAAAAAGTGTCCAGTGTTGATTCAAATAAGTTTCTATACTACTTTTGACAGTTTTTTTGTTTGAACAATCGTATACATCGTTATAAAATATCATGATTACAATATTTCTTAATTTTGAGTTTCCTTACGTTTCAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCAGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATANGCAAAGAGGGTAGCCAGAATCATCTGTAA-TTAGNTTTTTTTTC] [+] EMBL CD093643 [CTACGAGACCAAGTGGCTAAATGTCAAACATCTTAACCACTAAGCCACCGATCCACTACATGAAATAAGAGTAGATGGAACTGCGGTACTGCAACAATTTTTCCGCAGCCGTAAATTGCAATCATTGCTCTGCTTTTTTTCAGTAAATCCCCACTTTGTGAGATCCCTGTCAAGACAGTCAATTACTTCATGGAATAGTGCCATGTGTTGGTTTACCTTCCTTTAACCTTTAGAAACCAGTCACTACTAAGATTATTCGACCTGAAGAATGTAGAAAAAAGTGTCCAGTGTTGATTCAAATAAGTTTCTATACTACTTTTGACAGTTTTTTTGTTTGAACAATCGTATACATCGTTATAAAATATCATGATTACAATATTTCTTAATTTTGAGTTTCCTTACGTTTCAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCAGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATANGCAAAGAGGGTAGCCAGAATCATCTGTAA TTAGNTTTTTTT ] [+] EMBL CD093610 [ AAATGTCAAACATCTTAACCACTAAGCCACCGATCCACTACATGAAATAAGAGTAGATGGAACTGCGGTACTGCAACAATTTTTCCGCAGCCGTAAATTGCAATCATTGCTCTGCTTTTTTTCAGTAAATCCCCACTTTGTGAGATCCCTGTCAAGACAGTCAATTACTTCATGGAATAGTGCCATGTGTTGGTTTACCTTCCTTTAACCTTTAGAAACCAGTCACTACTAAGATTATTCGACCTGAAGAATGTAGAAAAAAGTGTCCAGTGTTGATTCAAATAAGTTTCTATACTACTTTTGACAGTTTTTTTGTTTGAACAATCGTATACATCGTTATAAAATATCATGATTACAATATTTCTTAATTTTGAGTTTCCTTACGTTTCAGTCAGTTTATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGTGATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCCACTCATGATCTACCAAATCGACCAATAAGCAAAGAGGTTAGCCAGGATCATCTGTAATTTAGTTTTTTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8252#0 -----TGAAAAATATGCCAGTTTATTAAAAGCTTACT---TTACTCATCG-TCTACAATT 51 consensus_8252#1 CTACGAGACCAAGTGGCTAAATGTCAAACATCTTAACCACTAAGCCACCGATCCACTACA 60 ** ** ** * * ** * **** * * ** ** ** ** * consensus_8252#0 TACACCAGCTTTTCATCATAATCCCATACATAGAGAACTT-------GAAGAACATTACA 104 consensus_8252#1 TGAAATAAGAGTAGATGGAACTGCGGTACTGCAACAATTTTTCCGCAGCCGTAAATTGCA 120 * * * * ** * * * *** * ** ** * * * *** ** consensus_8252#0 AGGAAAGACTCGGTTGTTTAAGTGAAGATGCTGGTTATTTTAATGTTATCGGAAATCGTC 164 consensus_8252#1 ATCATTGCTCTGCTTTTTTTCAGTAAATCCCCACTTTGTGAGATCCCTGTCAAGACAGTC 180 * * * * ** *** ** * ** * ** * * *** consensus_8252#0 --TCATTCAAGTGATTAATAAAGCTTTATCATCTGGTAGACCGTATACTCTT-AATCCAA 221 consensus_8252#1 AATTACTTCATGGAATAGTGCCATGTGTTGGTTTACCTTCCTTTAACCTTTAGAAACCAG 240 * * * * ** ** * * * * * * ** ** * ** *** consensus_8252#0 TTACTTTCAC--TTCTTCTATC--AGTGATTTAAGTATGAGAGAACAATGTTTACATG-- 275 consensus_8252#1 TCACTACTAAGATTATTCGACCTGAAGAATGTAGAAAAAAGTGTCCAGTGTTGATTCAAA 300 * *** * ** *** * * * ** ** * ** * ** **** * consensus_8252#0 -------CTTTACTACCT--GGCAATG-----AAGTGAAGAATACTAAAATCCAGAAGAG 321 consensus_8252#1 TAAGTTTCTATACTACTTTTGACAGTTTTTTTGTTTGAACAATCGTATACATCGTTATAA 360 ** ****** * * ** * **** *** ** * * * * consensus_8252#0 GAAA--ACTACTAACGAACTTTGTAGAGTGGATGTTCTTTCCAATACTGATAGTCAGTTT 379 consensus_8252#1 AATATCATGATTACAATATTTCTTAATTTTGAGTTTCCTTACGTTTC----AGTCAGTTT 416 * * * * ** * ** ** * ** *** ** * * * ********* consensus_8252#0 ATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGT 439 consensus_8252#1 ATTGATAGTCAATCTAATAAGGACGGTGACGGAAGCATTTCAGGATTCGACGATGATAGT 476 ************************************************************ consensus_8252#0 GATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCCGACAGCAGCTGACCAGTCC 499 consensus_8252#1 GATCAATTTTTAGCGCCTGATGAAAGGGACATAGTTAATCAGACAGCAGCTGACCAGTCC 536 **************************************** ******************* consensus_8252#0 ACTCATGATCTACCAAATCGACCAATAAGCAAAGAGA-TAATGAAAAATAAAGGCATTGT 558 consensus_8252#1 ACTCATGATCTACCAAATCGACCAATANGCAAAGAGGGTAGCCAGAATCATCTGTAATTA 596 *************************** ******** ** * ** * * * * consensus_8252#0 AAAATATCGACATAAACGTGAACGTATCCTAGAGTGCATTTACGATATAAATACCGCAAG 618 consensus_8252#1 GNTTTTTTTTC------------------------------------------------- 607 * * * consensus_8252#0 GCAACAATTCGTTACAGATCACGTGTTGCGCCAGTCGTAAAGAAGACAAACATATGCTGG 678 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 TGAAGTAAAAGGATACGTGTAAATTTGATTAAATCGCACAATTTCAAAAATATTAA 734 consensus_8252#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||