cluster # 8257

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Schistosoma mansoni
cluster # 8257 cluster # 8257 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8257#0 length = 759 sequences # 5

consensus_8257#1 length = 317 sequences # 1

consensusID : consensus_8257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 759
fasta sequence

                              [ATAACATAGTCCGTAGGCTTTCTGTCTCTACTACATAACTGATTTTTGAATCTGAATCTTTGTTTTTCCGGACAGAGCGAAACTAGTCCTTGAAAGTGGTTCTAAGATCCTAACGTTCGTATCCCGTTTTCGCTGGTAATGTACTTGGTCCTGCAGAGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTAACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTTGGTCCATCTCCAAGCGCCCAATCTTATCTAAATATCTCTGCTATTTTAAACGCTGTGAAGTCGACGAGTGCCCAAGCAGTACACCCTGGTTATGGTTTTTTGTCGGAAAACACTCTTTTTGCCGCGGAGTTAGAGAAAATGAATGTTGTCTTTCTTGGTCCTAATTCTAGAGCTATCAAAGCTATGGGAGATAAAATTGAGAGCAAACGAATTGCTAATCAAGCTAAAGTTAATTGTATCCCAGGTTATGATGGAGAAGTGGATGGCCCANATGAAGCTGCTAGGATTGCTGCTGAAAT]

[+] EMBL CD191578             [ATAACATAGTCCGTAGGCTTTCTGTCTCTACTACATAACTGATTTTTGAATCTGAATCTTTGTTTTTCCGGACAGAGCGAAACTAGTCCTTGAAAGTGGTTCTAAGATCCTAACGTTCGTATCCCGTTTTCGCTGGTAATGTACTTGGTCCTGCAGAGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGT CATGGCGGAC                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD191499             [ATAACATAGTCCGTAGGCTTTCTGTCTCTACTACATAACTGATTTTTGAATCTGAATCTTTGTTTTTCCGGACAGAGCGAAACTAGTCCTTGAAAGTGGTTCTAAGATCCTAACGTTCGTATCCCGTTTTCGCTGGTAATGTACTTGGTCCTGCAGAGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATGGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAGATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTAT                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD095144             [                                                                                                                                                                                                      AACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTTGGTCCATCTCCAAGCGCCCAATCTTATCTAAATATCTCTGCTATTTTAAACGCTGTGAAGTCGACGAGTGCCCAAGCAGTACACCCTGGTTATGGTTTTTTGTCGGAAAACACTCTTTTTGCCGCGGAGTTAGAGAAAATGAATGTTGTCTTTCTTGGTCCTAATTCTAGAGCTATCAAAGCTATGGGAGATAAAATTGAGAGCAAACGAATTGCTAATCAAGCTAAAGTTAATTGTATCCCAGGTTATGATGGAGAAGTGGATGGCCCANATGAAGCTGCTAGGATTGCTGCTGAAAT]
[+] EMBL CD120921             [                                                                                                                                                                                              agttgtcaAACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD121027             [                                                                                                                                                                                              agttgtcaAACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT                                                                                                                                                                                                                                                                                                           ]




>consensus_8257#0
ATAACATAGTCCGTAGGCTTTCTGTCTCTACTACATAACTGATTTTTGAATCTGAATCTT
TGTTTTTCCGGACAGAGCGAAACTAGTCCTTGAAAGTGGTTCTAAGATCCTAACGTTCGT
ATCCCGTTTTCGCTGGTAATGTACTTGGTCCTGCAGAGTTGTCAAACTCGAGTAAGATTT
GTTGTTTACAAGCAGTTTAACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAG
ATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAA
TGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAAT
CCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTT
ATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTTGGTCCATCTCCAAGCGCCCA
ATCTTATCTAAATATCTCTGCTATTTTAAACGCTGTGAAGTCGACGAGTGCCCAAGCAGT
ACACCCTGGTTATGGTTTTTTGTCGGAAAACACTCTTTTTGCCGCGGAGTTAGAGAAAAT
GAATGTTGTCTTTCTTGGTCCTAATTCTAGAGCTATCAAAGCTATGGGAGATAAAATTGA
GAGCAAACGAATTGCTAATCAAGCTAAAGTTAATTGTATCCCAGGTTATGATGGAGAAGT
GGATGGCCCANATGAAGCTGCTAGGATTGCTGCTGAAAT

consensusID : consensus_8257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [AGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGGTAAATTAACAAAAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT]

[+] EMBL CD170702             [AGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGGTAAATTAACAAAAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT]




>consensus_8257#1
AGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAG
GGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTA
CTGGAATGATCGATGCGATAATAATGAAGAGGTAAATTAACAAAAAATTCGAAAAAGTAC
TCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGA
TTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGG
ACGAAGCAGTATGTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8257#0      ATAACATAGTCCGTAGGCTTTCTGTCTCTACTACATAACTGATTTTTGAATCTGAATCTT 60
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      TGTTTTTCCGGACAGAGCGAAACTAGTCCTTGAAAGTGGTTCTAAGATCCTAACGTTCGT 120
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      ATCCCGTTTTCGCTGGTAATGTACTTGGTCCTGCAGAGTTGTCAAACTCGAGTAAGATTT 180
consensus_8257#1      ------------------------------------AGTTGTCAAACTCGAGTAAGATTT 24
                                                          ************************

consensus_8257#0      GTTGTTTACAAGCAGTTTAACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAG 240
consensus_8257#1      GTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAG 84
                      ******************  ***  ***********************************

consensus_8257#0      ATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAA 300
consensus_8257#1      ATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAA 144
                      ************************************************************

consensus_8257#0      TGAAGAG-------------AAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCG 347
consensus_8257#1      TGAAGAGGTAAATTAACAAAAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCG 204
                      *******             ****************************************

consensus_8257#0      CCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCG 407
consensus_8257#1      CCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCG 264
                      ************************************************************

consensus_8257#0      AAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTTGGTCCAT 467
consensus_8257#1      AAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT------- 317
                      *****************************************************       

consensus_8257#0      CTCCAAGCGCCCAATCTTATCTAAATATCTCTGCTATTTTAAACGCTGTGAAGTCGACGA 527
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      GTGCCCAAGCAGTACACCCTGGTTATGGTTTTTTGTCGGAAAACACTCTTTTTGCCGCGG 587
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      AGTTAGAGAAAATGAATGTTGTCTTTCTTGGTCCTAATTCTAGAGCTATCAAAGCTATGG 647
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      GAGATAAAATTGAGAGCAAACGAATTGCTAATCAAGCTAAAGTTAATTGTATCCCAGGTT 707
consensus_8257#1      ------------------------------------------------------------
                                                                                  

consensus_8257#0      ATGATGGAGAAGTGGATGGCCCANATGAAGCTGCTAGGATTGCTGCTGAAAT 759
consensus_8257#1      ----------------------------------------------------