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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1055 fasta sequence
[NAATTTGGCACGAGGTACCGCTCATACCTGGAAGCAACAGGGNATTCTATTCTACCAGACACAAGCTTACGTTGAACAAAGGCTTCCTCAAATTTATTCACAACCGTTTAAAGTTTGAAGTTATGTCTGTGTGAAGCCATCTCAGGATTGGATTGTACAAAACAAGTTCAAAAAACCCGCCACAGGCGCCAATAACACAGTTGATTTCCTCTTGGTTGACGATAAGTTAACATTCAAGATAATAAAGTAAACAATGTCTATTTTTGACCGATTCCGAGATATTGAACCTGATCGCATCCGCAATAGCATAGTATCAATTATTGCAGGATTTTTATTTGCATTAGGCTGGTGGATAGCAATTGACGCAGCTGTGCTTTTCGCCGAAAACGATTCCTTACCTAATGCATATCATACAGCTGGAGTATTCAGCACTATCGCTTTCATATTAATCAACAGTGTTCCTAACGGAGTGTTGAGAGATGAATTTTCAGACAGTCGTATCGGTCGTCGCGGAGCACTTATATGCCTATTTTTCGCTTTCTCAATGGCATTTAGCAGTACAATAGCTGCATGTTGGATACTATTTGGAGGTTATGTAGCTGTAGATAAAACACCAGTATGGCCAGGTGTAGCTATACTATTACAAAATCTACTAATTTGTATATCGTCAATTTTATTCAAATTTGGCAGAAAAGATCTTAGTGATTTCTAACCTGCTCACTTTAAAAAAAATATTATTCTCGCTTGATTGCTCATTCATTCACGGATTCATTTATACTTACATTATCGTCATTTTTTCACAGTATCAAATGATCAATAAACTTAATTGAAAAAGCATTTCCTCATTTCATTTTCTTTTCTTCTTGAA-AGAAATTAATATTTTTATTTTCCAATANAAAGATTACTTCAAATAAATAAGTGTAAAACTNTTTTTGGNTTTGTTGTATCTGNNGTGTACGTGTATGCAANTTTGTGTGTTTGACACATAATCANACCTTTTGTACCACAATTGAAAACATATCTATTGTATTTCATTAAAAGACGCATTCATACAT]
[+] EMBL CD079594 [NAATTTGGCACGAGGTACCGCTCATACCTGGAAGCAACAGGGNATTCTATTCTACCAGACACAAGCTTACGTTGAACAAAGGCTTCCTCAAATTTATTCACAACCGTTTAAAGTTTGAAGTTATGTCTGTGTGAAGCCATCTCAGGATTGGATTGTACAAAACAAGTTCAAAAAACCCGCCACAGGCGCCAATAACACAGTTGATTTCCTCTTGGTTGACGATAAGTTAACATTCAAGATAATAAAGTAAACAATGTCTATTTTTGACCGATTCCGAGATATTGAACCTGATCGCATCCGCAATAGCATAGTATCAATTATTGCAGGATTTTTATTTGCATTAGGCTGGTGGATAGCAATTGACGCAGCTGTGCTTTTCGCCGAAAACGATTCCTTACCTAATGCATATCATACAGCTGGAGTATTCAGCACTATCGCTTTCATATTAATCAACAGTGTTCCTAACGGAGTGTTGAGAGATGAATTTTCAGACAGTCGTATCGGTCGTCGCGGAGCACTTATATGCCTATTTTTCGCTTTCTCAATGGCATTTAGCAGTACAATAGCTGCATGTTGGATACTATTTGGAGGTTATGTAGCTGTAGATAAAACACCAGTATGGCCAGGTGTAGCTATACTATTACAAAATCTACTAATTTGTATATCGTCAATT ]
[+] EMBL CD080099 [ gAAGATAATAAAGTAAACAATGTCTATTTTTGACCGATTCCGAGATATTGAACCTGATCGCATCCGCAATAGCATAGTATCAATTATTGCAGGATTTTTATTTGCATTAGGCTGGTGGATAGCAATTGACGCAGCTGTGCTTTTCGCCGAAAACGATTCCTTACCTAATGCATATCATACAGCTGGAGTATTCAGCACTATCGCTTTCATATTAATCAACAGTGTTCCTAACGGAGTGTTGAGAGATGAATTTTCAGACAGTCGTATCGGTCGTCGCGGAGCACTTATATGCCTATTTTTCGCTTTCTCAATGGCATTTAGCAGTACAATAGCTGCATGTTGGATACTATTTGGAGGTTATGTAGCTGTAGATAAAACACCAGTATGGCCAGGTGTAGCTATACTATTACAAAATCTACTAATTTGTATATCGTCAATTTTATTCAAATTTGGCAGAAAAGATCTTAGTGATTTCTAACCTGCTCACTTTAAAAAAAATATTATTCTCGCTTGATTGCTCATTCATTCACGGATTCATTTATACTTACATTATCGTCATTTTTTCACAGTATCAAATGATCAATAAACTTAATTGAAAAAGCATTTCCTCATTTCATTTTCTTTTCTTCTTGAA AGAAATTAATATTTTTATTTTCCAATANAAAGATTACTTCAAATAAATAAGTGTAAAACTNTTTTTGGNTTTGTTGTATCTGNNGTGTACGTGTATGCAANTTTGTGTGTTTGACACATAATCANACCTTTTGTACCACAATTGAAAACATATCTATTGTATTTCATTAAAAGACGCATTCATACAT]
[+] EMBL CD079149 [ TTGACCGATTCCGAGATATTGAACCTGATCGCATCCGCAATAGCATAGTATCAATTATTGCAGGATTTTTATTTGCATTAGGCTGGTGGATAGCAATTGACGCAGCTGTGCTTTTCGCCGAAAACGATTCCTTACCTAATGCATATCATACAGCTGGAGTATTCAGCACTATCGCTTTCATATTAATCAACAGTGTTCCTAACGGAGTGTTGAGAGATGAATTTTCAGACAGTCGTATCGGTCGTCGCGGAGCACTTATATGCCTATTTTTCGCTTTCTCAATGGCATTTAGCAGTACAATAGCTGCATGTTGGATACTATTTGGAGGTTATGTAGCTGTAGATAAAACACCAGTATGGCCAGGTGTAGCTATACTATTACAAAATCTACTAATTTGTATATCGTCAATTTTATTCAAATTTGGCAGAAAAGATCTTAGTGATTTCTAACCTGCTCACTTTAAAAAAAATATTATTCTCGCTTGATTGCTCATTCATTCACGGATTCATTTATACTTACATTATCGTCATTTTTTCACAGTATCAAATGATCAATANACTTAATTGAAAAAGCATTTCCTCATTTCATTNTCTTTTCTTCTTGAANAGAAATTAATA ]
consensusID : consensus_8259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence
[AACAATGTCTATTTTTGACCGATTCCGAGATATTGAACCTGATCGCATCCGCAATAGCATAGTATCAATTATTGCAGGATTTTTATTTGCATTAGGCTGGTGGATAGCAATTGACGCAGCTGTGCTTTTCGCCGAAAACGATTCCTTACCTAATGCATATCATACAGCTGGAGTATTCAGCACTATCGCTTTCATATTAATCAACAGTGTTCCTAACGGAGTGTTGAGAGATGAATTTTCAGACAGTCGTATCGGTCGTCGCGGAGCACTTATATGCCTATTTTTCGCTTTCTCAATGGCATTTAGCAGTACAATAGCTGCATGTTGGATACTATTTGGAGGTTATGTAGCTGTAGATAAAACACCAGTATGGCCAGGTGTAGCTATACTATTACAAAATCTACTAATTTGTATATCGTCAATTTTATTCAAATTTGGCAGAAAAGATCTTAGTGATTTCTAACCTGCTCACTTTAAAAAAAATATTATTCTCGCTTGATTGCTCATTCATTCACGGATTCATTTATACTTACATTATCGTCATTTTTTCACAGTATCAAATGATCAATAAACTTAATTGAAAAAGCATTTCCTCATTTCATTTTCTTTTCTTCTTGAAAAGAAATGTAATATTTTTATTTTCCAAAAAAAAGATTACTTCAAATAAATAAAAAAAAAGTAAAAAA]
[-] EMBL CD073856 [AACAATGTCTATTTTTGACCGATTCCGAGATATTGAACCTGATCGCATCCGCAATAGCATAGTATCAATTATTGCAGGATTTTTATTTGCATTAGGCTGGTGGATAGCAATTGACGCAGCTGTGCTTTTCGCCGAAAACGATTCCTTACCTAATGCATATCATACAGCTGGAGTATTCAGCACTATCGCTTTCATATTAATCAACAGTGTTCCTAACGGAGTGTTGAGAGATGAATTTTCAGACAGTCGTATCGGTCGTCGCGGAGCACTTATATGCCTATTTTTCGCTTTCTCAATGGCATTTAGCAGTACAATAGCTGCATGTTGGATACTATTTGGAGGTTATGTAGCTGTAGATAAAACACCAGTATGGCCAGGTGTAGCTATACTATTACAAAATCTACTAATTTGTATATCGTCAATTTTATTCAAATTTGGCAGAAAAGATCTTAGTGATTTCTAACCTGCTCACTTTAAAAAAAATATTATTCTCGCTTGATTGCTCATTCATTCACGGATTCATTTATACTTACATTATCGTCATTTTTTCACAGTATCAAATGATCAATAAACTTAATTGAAAAAGCATTTCCTCATTTCATTTTCTTTTCTTCTTGAAAAGAAATGTAATATTTTTATTTTCCAAAAAAAAGATTACTTCAAATAAATAAAAAAAAAGTAAAAAA]
[-] EMBL CD189631 [ TTGAACCTGATCGCATCCGCAATAGCATAGTATCAATTATTGCGGGATTTTTATTTGCATTAGGCTGGTGGATAGCAATTGACGCAGCTGTGCTTTTCGCCGAAAACGATTCCTTACCTAATGCATATCATACAGCTGGAGTATTCAGCACTATCGCTTTCATATTAATCAACAGTGTTCCTAACGGAGTGTTGAGAGATGAATTTTCAGACAGTCGTATCGGTCGTCGCGGAGCACTTATATGCCTATTTTTCGCTTTCTCAATGGCATTTAGCAGTACAATAGCTGCATGTTGGATACTATTTGGAGGTTATGTAGCTGTAGATAAAACA ]
consensusID : consensus_8259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence
[TTCTGGTTTGCTTGCTCATTCATTAACGGATTCATGTATACTTACATTATCGTCATTTTTTCACAGTATCAAATGATCAATAAACTTAATTGAAAAAGCATTTCCTCATTGCATTTTCTTTTCTTCTTGAAAAGAAATTACTATTTTTATTTTCCAATAAAAAGATTACTTCAAATAAATAAGTGTAAACTTTTTTTGTTTTGTTGTATCTGTGTGTACGTGTATGCAATTGTGTGTTTGACACATAATCAAACCTGTTGTACCACAATTGAAAAACATATCTATTGTAGTCAATTAAAAGACGCATTCAATACATACAACATTCAATAATAAAAAAAAAAAAAAAA]
[-] EMBL AI395369 [TTCTGGTTTGCTTGCTCATTCATTAACGGATTCATGTATACTTACATTATCGTCATTTTTTCACAGTATCAAATGATCAATAAACTTAATTGAAAAAGCATTTCCTCATTGCATTTTCTTTTCTTCTTGAAAAGAAATTACTATTTTTATTTTCCAATAAAAAGATTACTTCAAATAAATAAGTGTAAACTTTTTTTGTTTTGTTGTATCTGTGTGTACGTGTATGCAATTGTGTGTTTGACACATAATCAAACCTGTTGTACCACAATTGAAAAACATATCTATTGTAGTCAATTAAAAGACGCATTCAATACATACAACATTCAATAATAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8259#0 NAATTTGGCACGAGGTACCGCTCATACCTGGAAGCAACAGGGNATTCTATTCTACCAGAC 60
consensus_8259#1 ------------------------------------------------------------
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 ACAAGCTTACGTTGAACAAAGGCTTCCTCAAATTTATTCACAACCGTTTAAAGTTTGAAG 120
consensus_8259#1 ------------------------------------------------------------
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 TTATGTCTGTGTGAAGCCATCTCAGGATTGGATTGTACAAAACAAGTTCAAAAAACCCGC 180
consensus_8259#1 ------------------------------------------------------------
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 CACAGGCGCCAATAACACAGTTGATTTCCTCTTGGTTGACGATAAGTTAACATTCAAGAT 240
consensus_8259#1 ------------------------------------------------------------
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 AATAAAGTAAACAATGTCTATTTTTGACCGATTCCGAGATATTGAACCTGATCGCATCCG 300
consensus_8259#1 ---------AACAATGTCTATTTTTGACCGATTCCGAGATATTGAACCTGATCGCATCCG 51
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 CAATAGCATAGTATCAATTATTGCAGGATTTTTATTTGCATTAGGCTGGTGGATAGCAAT 360
consensus_8259#1 CAATAGCATAGTATCAATTATTGCAGGATTTTTATTTGCATTAGGCTGGTGGATAGCAAT 111
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 TGACGCAGCTGTGCTTTTCGCCGAAAACGATTCCTTACCTAATGCATATCATACAGCTGG 420
consensus_8259#1 TGACGCAGCTGTGCTTTTCGCCGAAAACGATTCCTTACCTAATGCATATCATACAGCTGG 171
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 AGTATTCAGCACTATCGCTTTCATATTAATCAACAGTGTTCCTAACGGAGTGTTGAGAGA 480
consensus_8259#1 AGTATTCAGCACTATCGCTTTCATATTAATCAACAGTGTTCCTAACGGAGTGTTGAGAGA 231
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 TGAATTTTCAGACAGTCGTATCGGTCGTCGCGGAGCACTTATATGCCTATTTTTCGCTTT 540
consensus_8259#1 TGAATTTTCAGACAGTCGTATCGGTCGTCGCGGAGCACTTATATGCCTATTTTTCGCTTT 291
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 CTCAATGGCATTTAGCAGTACAATAGCTGCATGTTGGATACTATTTGGAGGTTATGTAGC 600
consensus_8259#1 CTCAATGGCATTTAGCAGTACAATAGCTGCATGTTGGATACTATTTGGAGGTTATGTAGC 351
consensus_8259#2 ---------------------------------------------------TTCTGGTTT 9
** **
consensus_8259#0 TGTAGATAAAACACCAGTATGGCCAGGTGTAGCTATACTATTACAAAATCTACTAATTTG 660
consensus_8259#1 TGTAGATAAAACACCAGTATGGCCAGGTGTAGCTATACTATTACAAAATCTACTAATTTG 411
consensus_8259#2 GCTTGCTCATTCATTAACGGATTCATGTATACTTACATTATCGTCATTTTTTCACAGTAT 69
* * * * ** * ** ** ** ** * *** * * * * * *
consensus_8259#0 TATATCGTCAATTTTATTCAAATTTGGCAGAAAAGATCTTAGTGATTTCTAACCTGCTCA 720
consensus_8259#1 TATATCGTCAATTTTATTCAAATTTGGCAGAAAAGATCTTAGTGATTTCTAACCTGCTCA 471
consensus_8259#2 CAAATGATCAATAA-ACTTAA--TTGAAAAAGCATTTCCTCATTGCATTTTCTTTTCTTC 126
* ** ***** * * ** *** * * * ** * * * * * **
consensus_8259#0 CTTTAAAAAAAATATTATTCTCGCTTGATTGCTCATTCATTCACGGATTCATTTATACTT 780
consensus_8259#1 CTTTAAAAAAAATATTATTCTCGCTTGATTGCTCATTCATTCACGGATTCATTTATACTT 531
consensus_8259#2 TTGAAAAGAAATTACTATTTTTATTT----TCCAATAAAAAGATTACTTCAAATAAATAA 182
* *** *** ** **** * ** * ** * * **** ** *
consensus_8259#0 ACATTATCGTCATTT-TTTCACAGTATCAAATGATCAATAAACTTAATTGAAAAAGCATT 839
consensus_8259#1 ACATTATCGTCATTT-TTTCACAGTATCAAATGATCAATAAACTTAATTGAAAAAGCATT 590
consensus_8259#2 GTGTAAACTTTTTTTGTTTTGTTGTATCTGTGTGTACGTGTATGCAATTGTGTGTTTGAC 242
* * * * *** *** ***** * * * *****
consensus_8259#0 TCCTCATTTCATTTTCTTTTCTTC--TTGAAA-GAAAT-TAATATTTTTATTTTCCAATA 895
consensus_8259#1 TCCTCATTTCATTTTCTTTTCTTC--TTGAAAAGAAATGTAATATTTTTATTTTCCAAAA 648
consensus_8259#2 ACATAATCAAACCTGTTGTACCACAATTGAAA-AACATATC-TATTGTAGTCAATTAAAA 300
* * ** * * * * * * ****** * ** * **** * * ** *
consensus_8259#0 NAAAGATT-ACTTCAAATAA------ATAAGTGTAAAACTNTTTTTGGNTTTGTTGTATC 948
consensus_8259#1 AAAAGATT-ACTTCAAATAA------ATAAAAAAAAAGTAAAAAA--------------- 686
consensus_8259#2 GACGCATTCAATACATACAACATTCAATAATAAAAAAAAAAAAAAAA------------- 347
* *** * * ** * ** **** ***
consensus_8259#0 TGNNGTGTACGTGTATGCAANTTTGTGTGTTTGACACATAATCANACCTTTTGTACCACA 1008
consensus_8259#1 ------------------------------------------------------------
consensus_8259#2 ------------------------------------------------------------
consensus_8259#0 ATTGAAAACATATCTATTGTATTTCATTAAAAGACGCATTCATACAT 1055
consensus_8259#1 -----------------------------------------------
consensus_8259#2 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||