These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1136 fasta sequence [CTGGTCCACACAGAAGTCCGAAGTCTCAGATGAAAATGTTTCATATGTTGGTTGTGCTGGATACATCCCATCCCTTTGTGACCCACTTTTGGATGCATTGAACAAATTATCAATAAGCCCAGAGTCTCCAGATCGTCTCTCTGGTATCGGATATCATACTGGAGATAACATTACTCCTGTTGTTCGTAATCCAGATTCTCATACTAGATACCCCAAGGAAAGTAAATCAACACATCTCGATTTTGATGCTGTTAGATTAAATCCCTTTGGTGTTTCACCAAACTACATGGAGACTTTTGAGAACTTATGTGGATGTGGACACAATACTCAATCTGAAATCCGGTTACCGAGATCAGATAATATTTTCAGTCATAGTCCTGTCACCTGCGGTGATGTCAATAAGGCGCAATTCACCAATCAAACCAACCAGTTGGTTTCGATCAGAAAAAATAATTGCCCCCTTCCCTGTGACGAGTATCCCGCANATATAGTTATCGATGGAGGTGCCTGGAATGGCTTGCCACTGCGTGATGCCATTGNGGCCGCTCTTGTTATACTTACTAGTAAATCCAAAGCATCTGGATGCCGTCGAATGATATCCCGTTCTTCCCATAGAAATAAGAAGTGGGATCGTGAGACGTTAAAACTCCACTCTTGGTAAGTATGTTATTTACCGAAGCTTCATTCTCTACAGGTTCAACTCTTTTTGCCTGTTGGAAATGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAAAAAGTTGGAGGAAGATTATGTTCTATGTGCATTTTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGG-GTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTATGTTTATTATGTCCTCATAAACTGAGTTATATCCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD079123 [CTGGTCCACACAGAAGTCCGAAGTCTCAGATGAAAATGTTTCATATGTTGGTTGTGCTGGATACATCCCATCCCTTTGTGACCCACTTTTGGATGCATTGAACAAATTATCAATAAGCCCAGAGTCTCCAGATCGTCTCTCTGGTATCGGATATCATACTGGAGATAACATTACTCCTGTTGTTCGTAATCCAGATTCTCATACTAGATACCCCAAGGAAAGTAAATCAACACATCTCGATTTTGATGCTGTTAGATTAAATCCCTTTGGTGTTTCACCAAACTACATGGAGACTTTTGAGAACTTATGTGGATGTGGACACAATACTCAATCTGAAATCCGGTTACCGAGATCAGATAATATTTTCAGTCATAGTCCTGTCACCTGCGGTGATGTCAATAAGGCGCAATTCACCAATCAAACCAACCAGTTGGTTTCGATCAGAAAAAATAATTGCCCCCTTCCCTGTGACGAGTATCCCGCANATATAGTTATCGATGGAGGTGCCTGGAATGGCTTGCCACTGCGTGATGCCATTGNGGCCGCTCTTGTTATACTTACTAGTAAATCCAAAGCATCTGGATGCCGTCGAATGATAT ] [+] EMBL CD158869 [ ACCAAACTACATGGAGACTTTTGAGAACTTATGTGGATGTGGACACAATACTCAATCTGAAATCCGGTTACCGAGATCAGATAATATTTTCAGTCAT ] [+] EMBL CD149779 [ ATGGCTTGCCACTGCGTGATGCCATTGGGGCCGCTCTTGTTATACTTACTAGTAAATCCAAAGCATCTGGATGCCGTCGAATGATATCCCGTTCTTCCCATAGAAATAAGAAGTGGGATCGTGAGACGTTAAAACTCCACTCTTGGTAAGTATGTTATTTACCGAAGCTTCATTCTCTACAGGTTCAACTCTTTTTGCCTGTTGGAAATGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAAAAAGTTGGAGGAAGATTATGTTCTATGTGCATTTTGC ] [-] EMBL AI395810 [ CCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAGAAAGTTGGAGGAAGATTATGTTCTATGTGCATTTTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGG GTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTATGTTTATTATGTCCTCATAAACTGAGTTATATCCAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI394939 [ AAGTTGGAGGAAGATTATGTTATATGTGCATTTTACCGGAACACTGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGGTGTGACATGTCCGGTTTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATAAGGATTTATGTTTATTATGTCCTCATAAACTGAGTTATATCCAAAAAAAAAAAAAAAA ] consensusID : consensus_8297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [TGAGATCGTGAGACGTTAAAACACCACTCTTGGTTCAACTCTTTTTGCCTGTTGGAAATGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAGAAAGTTGGAGGAAGATTATGTTCTATGTGCATTGTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGGGTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTATGTCTAGTATGTCCTCATAAACTGAGTTATANCCAAAAAAACCTAAAAA] [-] EMBL AI394835 [TGAGATCGTGAGACGTTAAAACACCACTCTTGGTTCAACTCTTTTTGCCTGTTGGAAATGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAGAAAGTTGGAGGAAGATTATGTTCTATGTGCATTGTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAGTTAGAGATCAAGATGGGCGGGTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATTGCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTTAGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCATTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTATGTCTAGTATGTCCTCATAAACTGAGTTATANCCAAAAAAACCTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8297#0 CTGGTCCACACAGAAGTCCGAAGTCTCAGATGAAAATGTTTCATATGTTGGTTGTGCTGG 60 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 ATACATCCCATCCCTTTGTGACCCACTTTTGGATGCATTGAACAAATTATCAATAAGCCC 120 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 AGAGTCTCCAGATCGTCTCTCTGGTATCGGATATCATACTGGAGATAACATTACTCCTGT 180 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 TGTTCGTAATCCAGATTCTCATACTAGATACCCCAAGGAAAGTAAATCAACACATCTCGA 240 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 TTTTGATGCTGTTAGATTAAATCCCTTTGGTGTTTCACCAAACTACATGGAGACTTTTGA 300 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 GAACTTATGTGGATGTGGACACAATACTCAATCTGAAATCCGGTTACCGAGATCAGATAA 360 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 TATTTTCAGTCATAGTCCTGTCACCTGCGGTGATGTCAATAAGGCGCAATTCACCAATCA 420 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 AACCAACCAGTTGGTTTCGATCAGAAAAAATAATTGCCCCCTTCCCTGTGACGAGTATCC 480 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 CGCANATATAGTTATCGATGGAGGTGCCTGGAATGGCTTGCCACTGCGTGATGCCATTGN 540 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 GGCCGCTCTTGTTATACTTACTAGTAAATCCAAAGCATCTGGATGCCGTCGAATGATATC 600 consensus_8297#1 ------------------------------------------------------------ consensus_8297#0 CCGTTCTTCCCATAGAAATAAGAAGTGGGATCGTGAGACGTTAAAACTCCACTCTTGGTA 660 consensus_8297#1 ----------------------------------------------------------TG 2 * consensus_8297#0 AGTATGTTATTTACCGAAGCTTCATTCTCTACAGGTTCAACTCTTTTTGCCTGTTGGAAA 720 consensus_8297#1 AGATCGTGAGACGTTAAAACACCACTCTT----GGTTCAACTCTTTTTGCCTGTTGGAAA 58 ** ** * ** * ** *** *************************** consensus_8297#0 TGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAAAAAGTTGGAGGAAGATTATG 780 consensus_8297#1 TGCCTGCTTCTCTTAAACAAATATTCCTGTCAGTTCGCAGAAAGTTGGAGGAAGATTATG 118 *************************************** ******************** consensus_8297#0 TTCTATGTGCATTTTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAG 840 consensus_8297#1 TTCTATGTGCATTGTGCCGGAACAATGGCGAGTTACCAGAAATATACATAACTCATGAAG 178 ************* ********************************************** consensus_8297#0 TTAGAGATCAAGATGGGCGGGTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATT 900 consensus_8297#1 TTAGAGATCAAGATGGGCGGGTGACATGTCCGGTGTTACGTGTGCTCTCATGCCCCAATT 238 ************************************************************ consensus_8297#0 GCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTT 960 consensus_8297#1 GCCATGCGACCGGTGATCATGCTCATACAATCAGGTACTGCCCGTATCCCAGGCAACTTT 298 ************************************************************ consensus_8297#0 AGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCA 1020 consensus_8297#1 AGTTCTGTACTGACCTCTCTAAATACTCACTGTTTTATTATTGTTTACGTATGATTGTCA 358 ************************************************************ consensus_8297#0 TTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTA 1080 consensus_8297#1 TTATGTTACTTTATTACTTAGATTTCTGACTTTATTTTTATACATCCTAATATGGATTTA 418 ************************************************************ consensus_8297#0 TGTTTATTATGTCCTCATAAACTGAGTTATATCCAAAAAAAAAAAAAAAAAAAAAA 1136 consensus_8297#1 TGTCTAGTATGTCCTCATAAACTGAGTTATANCCAAAAAAACCTAAAAA------- 467 *** ** ************************ ********* ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||