cluster # 8302

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Schistosoma mansoni
cluster # 8302 cluster # 8302 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8302#0 length = 337 sequences # 5

consensus_8302#1 length = 183 sequences # 1

consensusID : consensus_8302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 337
fasta sequence

                              [AGAATAACTGTTCATTATGAAGCTCTACTTCATTTTCTTTCTGTTGGTGATATACTGTGGATTTTACAGC-GAAA-CCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGAATGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGG-ATACCTATGATGAACATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGATAAAACAAG-TAGTTCATGTATAANACGCAGTTGTGTTATCTCAATAACATACATACAAT]

[-] EMBL CD179250             [AGAATAACTGTTCATTATGAAGCTCTACTTCATTTTCTTTCTGTTGGTGATATACTGTGGATTTTACAGC GAAG CCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGAATGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGG ATACCTATGATGAACATAAATTGCATGACTAAA                                                                                 ]
[+] EMBL AA559525             [       CTGTCCATTATGAAGCTCTACTTCATTTCCTTTCTGTTGGTGATATACTGTGGATTTTACAGC GAAN CCAAACCTGGCCGANTCAANTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGAATGACTGTAAAAACAATGCGTGTAAAANAAATTGCCAANATGGAGTTAGAGATTGTATACNTGAAGTATGCAAAGTAAGCGANCACGTGG ATNCCTATGATGAACATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGATAAAACAAGTTAGTTCATG                                         ]
[+] EMBL AA559581             [                ATGAAGCTCTACTTCATTTTCTTTCTGTTGGTGATATACTGTGGATTTTANTGCTCAAC CCNAACCTGGCCGAGTCAAGTGCAACGCACAATGTTGGGAAACAGGAATta                                                                                                                                                                                                                      ]
[+] EMBL AA559409             [                               ATTTTCTTTCTGTTGGTGATATACTGTGGATTTTACAGC GAAAGCCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGAATGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGGAATACCTATGATGAACATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGATAAAACAAG TAGTTCATGTATAANACGCAGTTGTGTTATCTCA                ]
[+] EMBL AA999484             [                                   TCTTTCTGTTGGTGATATACTGTGGATTTTACAGC G AA CCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGGAATAAAGTGTAAGACTGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGG ATACCTATGATGAACATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGAT AAACAAG TAGTTCATGTATAAGACGCAGTTGTGTTATCTCAATAACATACATACAAT]




>consensus_8302#0
AGAATAACTGTTCATTATGAAGCTCTACTTCATTTTCTTTCTGTTGGTGATATACTGTGG
ATTTTACAGCGAAACCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGG
AATAAAGTGTAAGAATGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGT
TAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGGATACCTATGATGAACA
TAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGATAAAACAAGTAGTTCATGTATA
ANACGCAGTTGTGTTATCTCAATAACATACATACAAT

consensusID : consensus_8302#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [CTGCGACTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAA]

[+] EMBL CD090713             [CTGCGACTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGTGAA]




>consensus_8302#1
CTGCGACTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGT
TAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATT
GTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGTTAGAGATTGTATACGT
GAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8302#0      AGAATAACTGTTCATTATGAAGCTCTACTTCATTTTCTTTCTGTTGGTGATATACTGTGG 60
consensus_8302#1      ------------------------------------------------------------
                                                                                  

consensus_8302#0      ATTTTACAGCGAAACCAAACCTGGCCGAGTCAAGTGCAGCGCACAATGTTGGGAAACAGG 120
consensus_8302#1      ------CTGCGACTTAGAGATTGTATACGTGAAGTATGCAAAGTAAG--CGAGCTGCCAA 52
                            * ****     *   **     ** ****         **    * *   *   

consensus_8302#0      AATAAAGTGTAAGAATGACTGTAGAAACAATGCGTGTAAAAGAAATTGCCAAGATGGAGT 180
consensus_8302#1      GATGGAGTTAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCTGCCAAGATGGAGT 112
                       **  ***   *** **  *     **  ****     **   *  **************

consensus_8302#0      TAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGCACGTGGATACCTATGATGAA-- 238
consensus_8302#1      TAGAGATTGTATACGTGAAGTATGCAAAGTAAGCGAGC-------TGCCAA-GATGGAGT 164
                      **************************************       * ** * **** *  

consensus_8302#0      CATAAATTGCATGACTAAATGTGTTGTACTGAGAAAGTGATAAAACAAGTAGTTCATGTA 298
consensus_8302#1      TAGAGATTGTATACGTGAA----------------------------------------- 183
                       * * **** **   * **                                         

consensus_8302#0      TAANACGCAGTTGTGTTATCTCAATAACATACATACAAT 337
consensus_8302#1      ---------------------------------------