These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 488 fasta sequence [ATTTCGAAGTCCTGATAAGAAGGACTTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAGACATTGATGAAACTAAATGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGTCATATAGAACATGAAATCCTTGTTCCTGTTGAAT-GGATCAAAAGTGGCACGTTAGTGGATTTTGAAGCCGTCGGG-AATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGT-AATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCC-ATACAAACTGAAACAACTGTGAAGATGACTACCATATGGGTTACAGAAAAGACTT] [+] EMBL CD152150 [ATTTCGAAGTCCTGATAAGAAGGACTTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAGACATTGATGAAACTAAATGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGTCATATAGAACATGAAATCCTTGTTCCTGTTGAAT GGATCAAAAGTGGCACGTTAGTGGATTTTGAAGCCGTCGGG AATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGTAAATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCC ATACAAACTGAAACAACTGTGAAGATGACTACCATATGGGTTACAGAAAAGACTT] [+] EMBL CD152091 [ CGCAATCAAGATGTCAATTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAGACATTGATGAAACTAAATGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGTCATATAGAACATGAAATCCTTGTTCCTGTTGAAT GGATCAAAAGTGGCACGTTAGTGGATTTTGAAGCCGTCGGG ] [-] EMBL CD152078 [ atgGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGTCATATAGAACATGAAATCCTTGTTCCTGTNGAAT GGATCAAAAGTGGCACGTTAGTGGATTTTGAAGCCGTCGGG AATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGT AATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCC ATACAAACTGAAACA ] [-] EMBL CD152089 [ TCGAAAATTGCTGCTATATTCAAATGTGAAAAACGTCATATAGAACATGAAATCCTTG TCCTG TGAATGGGATCAAAAGTGGCACGTTAGTGGATTTTGAAG CGTCGGGNAATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGT AATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCC ATACAAACTGAAACAACTGTGAAGATGTCTA ] [-] EMBL CD152146 [ ATATTGGTCCAAAAAACGAAACGAAATATGCATGCGAAAAAGCGAAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGT AATGATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCCTATACTACGTGA ] consensusID : consensus_8310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [CATTTTCATATTCACTCTAATGGTTTAATAAGTGTATTCAAAGATCGGTACTTTGGATTGATTGCAAATTATTTATCAGACACTCCACCTTTTGTATTCGAAGTTTTGGATACGAAGGACTTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAAAATTTGACGAAACTAAATGGAGATCGAAAATGGCTGCTATATTTCAATGCGAAGAACGGAAGAGGGAACCTGAAGTTCTTGTTCCTGTTGAATGGATTAAAAGTAACACGTTAGTGGA] [+] EMBL CD118777 [CATTTTCATATTCACTCTAATGGTTTAATAAGTGTATTCAAAGATCGGTACTTTGGATTGATTGCAAATTATTTATCAGACACTCCACCTTTTGTATTCGAAGTTTTGGATACGAAGGACTTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAGACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACAAAATTTGACGAAACTAAATGGAGATCGAAAATGGCTGCTATATTTCAATGCGAAGAACGGAAGAGGGAACCTGAAGTTCTTGTTCCTGTTGAATGGATTAAAAGTAACACGTTAGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8310#0 ------------------------------------------------------------ consensus_8310#1 CATTTTCATATTCACTCTAATGGTTTAATAAGTGTATTCAAAGATCGGTACTTTGGATTG 60 consensus_8310#0 ----------------------------------ATTTCGAAGTCCTG-ATAAGAAGGAC 25 consensus_8310#1 ATTGCAAATTATTTATCAGACACTCCACCTTTTGTATTCGAAGTTTTGGATACGAAGGAC 120 ******** ** *** ******* consensus_8310#0 TTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAG 85 consensus_8310#1 TTATTCGCAATCAAGATGTCTTTTAAGATAACAGTTAATAGTAAAAGTTTTACAAGCAAG 180 ************************************************************ consensus_8310#0 ACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACA 145 consensus_8310#1 ACAACTTATTTGATATATCCAAATGGGAGGATATCATTTTATTATGAGAACATTCCTACA 240 ************************************************************ consensus_8310#0 GACATTGATGAAACTAAATGGAAATCGAAAATTGCTGCTATATTTCAATGTGAAAAACGT 205 consensus_8310#1 AAATTTGACGAAACTAAATGGAGATCGAAAATGGCTGCTATATTTCAATGCGAAGAACGG 300 * **** ************* ********* ***************** *** **** consensus_8310#0 CATATAGAACATGAAATCCTTGTTCCTGTTGAATGGATCAAAAGTGGCACGTTAGTGGAT 265 consensus_8310#1 AAGAGGGAACCTGAAGTTCTTGTTCCTGTTGAATGGATTAAAAGTAACACGTTAGTGGA- 359 * * **** **** * ******************** ****** ************ consensus_8310#0 TTTGAAGCCGTCGGGAATATTTGTCCAAAAAACGAAACGAAAAATGCATGCGAAAAAGCG 325 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 AAACCGTCGGATATAGCATGTATTTGGTGTGAAAGAATTAACATATGCATAGATAGTAAT 385 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 GATAAGGAAACTCATAACATGAAAGTAAATGATTGCCGTATTCCGGCCATACAAACTGAA 445 consensus_8310#1 ------------------------------------------------------------ consensus_8310#0 ACAACTGTGAAGATGACTACCATATGGGTTACAGAAAAGACTT 488 consensus_8310#1 ------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||