These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence [GAATTGGACTCATAACCTATAACTTCTCGTCCCGAAAGTAGAAGTTACTTCATCAAAATCATTGGCATTTATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGGGGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGCGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTATGTTTTTAAATGATCTAATAAGATAACATTCACGAGGTACGATAATTTCATTCTAACGTTTTCTCATTAGCTCAGAGAATTTCCTTCCTGTCAATTGACCTAAACGTTTATTCACTCAATTATCACCTGCATTCGATATTTTAGTAAAATATGAATCCAAAATGCTTAATATATTTGACCGGATTGATCGAGCCTTTTTCGTTTTACAAAGGCCAGGACATT] [-] EMBL CD163453 [GAATTGGACTCATAACCTATAACTTCTCGTCCCGAAAGTAGAAGTTACTTCATCAAAATCATTGGCATTTATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGGGGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGCGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACT ] [+] EMBL CD158099 [ GAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTATGTTTTTAAATGATCTAATAAGATAACATTCACGAGGTACGATAATTTCATTCTAACGTTTTCTCATTAGCTCAGAGAATTTCCTTCCTGTCAATTGACCTAAACGTTTATTCACTCAATTATCACCTGCATTCGATATTTTAGTAAAATATGAATCCAAAATGCTTAATATATTTGACCGGATTGATCGAGCCTTTTTCGTTTTACAAAGGCCAGGACATT] consensusID : consensus_8324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 500 fasta sequence [ACGACTCTAGAGGATCCCCTCATAGGTTCGCAGGGATCATGCGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGGAATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACTAGAATACTCGGTAATATGCCAGCTGGTATAATAAGTCGAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAATACTGCATGCGCTTCTGGCCTACATTGCATTGGCGAAGGCTT] [+] EMBL CD060743 [ACGACTCTAGAGGATCCCCTCATAGGTTCGCAGGGATCATGCGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGGAATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACTAGAATACTCGGTAATATGCCAGCTGGTATAATAAGTCTAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAATACTGCATGCGCTTCTGGCCTACATTGCATTGGCGAAGGCTT] [+] EMBL CD060784 [ cagccgCGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTTTTTTCTGCCTAGTCATGTTTTTGGGAGCATGGGGGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTCATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTATTATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGGAATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACTAGAATACTCGGTAATATGCCAGCTGGTATAATAAGTCGAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAATACTGCATG ] [-] EMBL CD154820 [ ATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGCAGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGGAATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACAAGAATACTCGGTAATATGCCGGCTGGTATAATAAGTCGAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAATACTGCATGCGCTTCTGGCCTACA ] consensusID : consensus_8324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [CATGGACTGGCCCATGAGATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGGGGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTC] [-] EMBL CD160892 [CATGGACTGGCCCATGAGATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGGGGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATCTTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAGCATCGATGATCGAAAATTGGAAGAACAAAAGTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8324#0 GAATTGGACTCATAACCTATAACTTCTCGTCCCGAAAGTAGAAGTTACTTCATCAAAATC 60 consensus_8324#2 -----------------------------------------------CATGGACTGGCCC 13 consensus_8324#1 ------------------------------------------------------------ consensus_8324#0 ATTGGCATTTATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGG 120 consensus_8324#2 ATGAG-----ATATCTCTATTAATGACAGGAGTTCGGAGAGTTGCGATAACTGGTTTGGG 68 consensus_8324#1 ------------------------------------------------------------ consensus_8324#0 GGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATC 180 consensus_8324#2 GGTCTGTACACCTTTGGGTTTCAGTGTATCCGAATTATGGGCGAATCTTTTGCAGGGATC 128 consensus_8324#1 --------------ACGACTCTAGAGGATCCCC-TCATAGG-------TTCGCAGGGATC 38 * * ** * **** * ** ** ** ********* consensus_8324#0 TTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAG 240 consensus_8324#2 TTGTGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAG 188 consensus_8324#1 ATGCGGAATATCAAAGACGCTTGATGAATTTTCTTTTCTGCCTAGTCATGTTTTTGGGAG 98 ** ******************************************************** consensus_8324#0 CATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTC 300 consensus_8324#2 CATCGATGATCGAAAATTGGAAGAACAAAAGTCTC------------------------- 223 consensus_8324#1 CATCGATGATCGAAAATTGGAAGAACAAAAGTCTCTTGTGGAGTCTGAGGTCTATAAGTC 158 *********************************** consensus_8324#0 ATGCGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTAT 360 consensus_8324#2 ------------------------------------------------------------ consensus_8324#1 ATGTGGTTTGGATATTTCTAATGACTGGAGATCTGTATCACGTGCTAGTGCTCTGGGTAT 218 consensus_8324#0 TATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGC 420 consensus_8324#2 ------------------------------------------------------------ consensus_8324#1 TATTGCAACTTGTGAAGCTTTCAAACAAGTGAAGTGGAAAGCAAACTCAGGTTACCGAGC 278 consensus_8324#0 AGGTATGTTTTTAAATGATCTAATAAGATAACATTCACGAGGTACGATAATTTCATTCTA 480 consensus_8324#2 ------------------------------------------------------------ consensus_8324#1 AGGTGTTTGTTTTGGAGTGGGATTGGATGGTCCAAATGAAGTTATGAATACATCATCAGG 338 consensus_8324#0 ACGTTTTCTCATTAGCTCAGAGAATTTCCTTCCTGTCAATTGACCTA-AACGTTTATTCA 539 consensus_8324#2 ------------------------------------------------------------ consensus_8324#1 AATTTTAGCCGAAAGATACTCTACTATTGGGCCTCATGCTCTAACTAGAATACTCGGTAA 398 consensus_8324#0 CTCAATTATCACCTGCATTCGATATTTTAGTAAAATATGAATCCAAAATGCTTAATATAT 599 consensus_8324#2 ------------------------------------------------------------ consensus_8324#1 TATGCCAGCTGGTATAATAAGTCGAATTTGGGGACTACGAGGCCCGTGTATGACAGTCAA 458 consensus_8324#0 TTGACCGGATTGATCGAGCCTTTTTCGTTTTACAAAGGCCAGGACATT 647 consensus_8324#2 ------------------------------------------------ consensus_8324#1 TACTGCATGCGCTTCTGGCCTACATTGCATTGGCGAAGGCTT------ 500 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||