These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8331#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 723 fasta sequence [GCCAANATACTGGTACGAGGGCGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGTCAAAAGAAACTGGTAATCCAGTGGAATGGATTGAAGAAGAGAATTACATGTTTAAACTGTCTTCATTTAAAAATGATTTACACAAATGGCTAGATTCAGGAGTATTTCCTAAGTCGTCCAATCAATCAGTTTGGTGTAATATGGCACATAATATGGTGGATAATTCTCAAGATATATCTATTTCAAGACCAAAAAGTCGTTCAGATTGGGGTATACATGTTCCTGGTGATAATGAACAAATTGTTTACGTATGGTTCGATGCTCTGATCAACTACTTAACAGTTACAGGCTTCCCATGGTCAAATGTTAATGATGGTAGTTTTAAACAATCTCTCTGGCCACCAGATGTACAGTTTTTGGGAAAAGACATAATACGATTTCATGCAGTTCTCTGGCCTGCTTTATTAATGGCTGTCAATCTACCGTTGCCACGACTTCTAATTTGTCATCATCATGTACTTGTGGATAATGTTAAGATGTCTAAAAGTAGAGGTAACCAAGTCGATCCGATTGTTGAACAGTCTGCTTTATTGTCGGACGAATTAAACAGCAATGTTATAACACCTGCTGAATCAGATCTTCTTCGTTATGTTNTGCTTCGCCTTCCTTTGCT-ACATATGATGGTACTTATAGTCGTGAAATGGCTCGTA-AATGATTAACACA] [+] EMBL CD082282 [GCCAANATACTGGTACGAGGGCGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGTCAAAAGAAACTGGTAATCCAGTGGAATGGATTGAAGAAGAGAATTACATGTTTAAACTGTCTTCATTTAAAAATGATTTACACAAATGGCTAGATTCAGGAGTATTTCCTAAGTCGTCCAATCAATCAGTTTGGTGTAATATGGCACATAATATGGTGGATAATTCTCAAGATATATCTATTTCAAGACCAAAAAGTCGTTCAGATTGGGGTATACATGTTCCTGGTGATAATGAACAAATTGTTTACGTATGGTTCGATGCTCTGATCAACTACTTAACAGTTACAGGCTTCCCATGGTCAAATGTTAATGATGGTAGTTTTAAACAATCTCTCTGGCCACCAGATGTACAGTTTTTGGGAAAAGACATAATACGATTTCATGCAGTTCTCTGGCCTGCTTTATTAATGGCTGTCAATCTACCGTTGCCACGACTTCTAATTTGTCATCATCATGTACTTGTGGATAATGTTAAGATGTCTAAAAGTAGAGGTAACCAAGTCGATCCGATTGTTGAACAGTCTGCTTTATTGTCGGACGAATTAAACAGCAATGTTATAACACCTGCTGAATCAGATCTTCTTCGTTATGTTNTGCTTCGCCTTCCTTTGCT ACATATGATGGTACTTATAGTCGTGAAATGGCTCGTA AATGATTA ] [+] EMBL CD158028 [ GTGTCAAAAGAAACTGGTAATCCAGTGGAATGGATTGAAGAAGAGAATTACATGTTTAAACTGTCTTCATTTAAAAATGATTTACACAAATGGCTAGATTCAGGAGTATTTCCTAAGTCGTCCAATCAATCAGTTTGGTGTAATATGGCACATAATATGGTGGATAATTCTCAAGATATATCTATTTCAAGACCAAAAAGTCGTTCAGATTGGGGTATACATGTTCCTGGTGATAATGAACAA ] [+] EMBL CD143046 [ TTTTGGGAAAAGACATAATACGATTTCATGCAGTTCTCTGGCCTGCTTTATTAATGGCTGTCAATCTACCGTTGCCACGACTTCTAATTTGTCATCATCATGTACTTGTGGATAATGTTAAGATGTCTAAAAGTAGAGGTAACCAAGTCGATCCGATTGTTGAACAGTCTGCTTTATTGTCGGACGAATTANACAGCAATGTTATAACACCTGCTGAATCAGATCTTCTTCGTTATGTTTTGCTTCGCCTTCCTTTGCTAACATATGATGGTACTTATAGTCGTGAAATGNCTCGTANAATGATTAACACA] consensusID : consensus_8331#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 630 fasta sequence [TGTGATTTGTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGGTAATCATTCACGATGTT-TTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCCAATATTTTACGTTAATGCAAAACCTCATTTGGGCCATGCATATACCACATGTTTAGCTGACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAAGATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAAAACGTTTTTATCTTGTGGGACTGATGAACATGGATCTAAAGTTCGTCGTGCTGCAACTGTCAATAATCTTGATCCATTGCAGTATTGTAATCAAATGAGTCCTTTATTTGAGACTCTTTGTCATGCTACTCACGTAAAATACAATGATTTCATCCGTACTACTGAAACTAGGCATGTGAAAGCTGTTCATGAGTTTTGGAACCGTTTAAATGCCAGTGGTAATGTTTATCGAAGCAAATATTCTGGTTGGTATTGTGTTTCAGACGAAGCATTTTATACACCATGGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGTCAAAAGAAACTGGTAATCCAGTGGAATG] [+] EMBL AI975462 [TGTGATTTGTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGGTAATCATTCACGATGTT TTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCCAATATTTTACGTTAATGCAAAACCTCATTTGGGCCATGCATATACCACATGTTTAGCTGACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAAGATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAAAACGTTTTTATCTTGTGGGACTGATGAACATGGATCTAAAGTTCGTCGTGCTGCAACTGTCAATAATCTTGATCCATTGCAGTATTGTAATCAAATGAGTCCTTTATTTGAGACTCTTTGTCATGCTACTCACGTAAAATACAATGATTTCATCCGTACTACTGAAACTAGGCATGTGAAAGCTGTTCATGAGTTTTGGAACCGTTTAAATGCCAGTGGTAATGTTTATCGAAGCAAATATTCTGGTTGGTATTGTGTTTCAGACGAAGCATTTTATACACCATGGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGTCAAAAGAAACTGGTAATCCAGTGGAATG] [+] EMBL AW017221 [TGTGATTTGTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGGTAATCATTCACGATGTT TTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCCAATATTTTACGTTAATGCAAAACCTCATTTGGGCCATGCATATACCACATGTTTAGCTGACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAAGATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAAAACGTTTTTATCTTGTGGGACTGATGAACATGGATCTAAAGTTCGTCGTGCTGCAACTGTCAATAATCTTGATCCATTGCAGTATTGTAATCAAATGAGTCCTTTATTTGAGACTCTTTGTCATGCTACTCACGTAAAATACAATGATTTCATCCGTACTACTGAAACTAGGCATGTGAAAGCTGTTCATGAGTTTTGGAACCGTTTAAATGCCAGTGGTAATGT ] [+] EMBL AI976454 [ ATTTGTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGGTAATCATTCACGATGTTCTTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCCAATATTTTACGTTAATGCAAAACCTCATTTGGGCCATGCATATACCACATGTTTAGCTGACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAAGATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAGAACGTTCTTATCTTGTGGGACTGATGAACATGGATCTAAAGTTCGTCGTGCTGCAACTGTCAATAATCTTGATCCATTGCAGTATTGTAATCAAATGAGTCCTTTATTTGAGACTCTTTGTCATGCTACTCACGTAAAATACAATGATTTCATCCGTACTACTGAAACTAGGCATGTGAAAGCTGTTCATGAGTTCTGGAACCGTTTAAATGCCAGCGGTAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8331#0 GCCAANATACTGGTACGAGGGCGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGT 60 consensus_8331#1 ------------------------------------------------------------ consensus_8331#0 CAAAAGAAACTGGTAATCCAGTGGAATGGATTGAAGAAGAGAATTACATGTTTAAACTGT 120 consensus_8331#1 -----------TGTGATTT-GTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGG 48 ** ** ** * *** ** * * * * * *** consensus_8331#0 CTTCATTTAAAAATGATTTACA-CAAATGGCTAGATTCAGGAGTATTTCCTAAGTCGTCC 179 consensus_8331#1 TAATCATTCACGATGTTTTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCC 108 ** * *** *** ** * * * * * ** * *** * * **** consensus_8331#0 AATCAATCAGTTTGGTGTAATATGGCACATAATATGGTGGATAATTCTCAAGATATATCT 239 consensus_8331#1 AATATTTTACGTTAATGCAAAACCTCATTTGG-GCCATGCATATACCACATGTT-TAGCT 166 *** * * ** ** ** * ** * ** *** * ** * * ** ** consensus_8331#0 ATTTCAAGACCAAAA---AGTCGTTCA---GATTGGGGTATACATGTTCCTGGTGATAAT 293 consensus_8331#1 GACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAA 226 ** * *** * *** *** ** * **** *** * * consensus_8331#0 GAACAAATTGTTTACGTATGGTTCGATGCTCTGATCAACTACTTAACAGTTACAGGCTTC 353 consensus_8331#1 GATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAAAACGTTT 286 ** * **** * * * * ** * *** * ** * ** consensus_8331#0 CCATGGTCAAATGTTAATGATGGTAGTTTTAAACAATCTCTCTGGCCACCAG-ATGTACA 412 consensus_8331#1 TTATCTTGTGGGACTGATGAACATGGATCTAAA--GTTCGTCGTGCTGCAACTGTCAATA 344 ** * * **** * * * **** * ** ** * * * * * consensus_8331#0 GTTTTTGGGAAAAGACATAATACGATTTCATGCAGTTCTCTGGCCTGCTTTATTAATGGC 472 consensus_8331#1 ATCTTGATCCATTGCAGTATTGTAATCAAATG-AGTCCTTTA------TTTGAGACTCTT 397 * ** * * ** * ** *** *** ** * *** * * consensus_8331#0 TGTCAATCTACCGTTGCCACGACTTCTAATTTGTCATCATCATGTACTTGTGGATAATGT 532 consensus_8331#1 TGTCATGCTACT-----CACG-----TAAAATACAATGATTTCATCCGTACTACTGAAAC 447 ***** **** **** *** * ** ** * * * * * consensus_8331#0 TAAGATGTCTAAAAGTAGAGGTAACCAAGTCGATCCGATTGTTGAACAGTCTGCTTTATT 592 consensus_8331#1 TAGG-CATGTGAAAGCTG---TTCATGAGTTT-TGGAACCGTTTAAATGCCAGTGGTAAT 502 ** * * * **** * * *** * * *** ** * * * ** * consensus_8331#0 GTCGGACGAATTAAACAGCAATGTTA-TAACACCTGCTGAATCAGATCTTCTTCGTTATG 651 consensus_8331#1 GTTTATCGAAGCAAATATTCTGGTTGGTATTGTGTTTCAGACGAAGCATTTTATACACCA 562 ** **** *** * *** ** * * * ** * consensus_8331#0 TTNTGCTTCGCCTTCCTTTGCTACATATGATGGTACTTATAGTCGTGAAATGGCTCGTAA 711 consensus_8331#1 TGGGAAATTGATGAAACGAGTTTATCAGGA--GTACCTGT-GTCA-AAAGAAACTGGTAA 618 * * * * * * ** **** * * *** ** ** **** consensus_8331#0 ATGATTAACACA 723 consensus_8331#1 TCCAGTGGAATG 630 * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||