These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1231 fasta sequence [CCAANAATTCGGCACGAGGTCTGTAGAAGTGATCTTCTTACCCCCCCTCCAAATAAAGAGCAATCTCTCCTCAAAGATATTTGTCCGCTTGTACAATTCGTTGACTTTCATGCTGTTATCTTTATTATTTTCCATTTGAATTTATCCACCGTGATCTTTCGTTGCTTATTTGTTTGTTCATTGACTCTAGATATATTTGCCATGGCGTATTGATTTGGTTTTGTTCTTATCTACTTCCTGTCTTGTTGCTATCCATGTGATACCACCATTGAATGATGCTTAAAATCAGTATTTTTTTTGCTCTTTAGAATAAGTTTTGCTTAATATTCTATTTTTTTAATTAGTTTCCCGATTCTTCTCTTTTTATCTATCTACCTGTGTGTGTGTGCCTGTACTTTGTTTTAACTCCATCATCTCAAACTTTGTCGTTGCATTTTAAATTATCCCCATTAACCTATCAGTGTGTGTGTGTATACTTCTGAATGGCTTGCTAGTCAGTCTTGAAATAAGAACTAACAATAATATATAATTACTTTCTATTGTGTTTATTTTTTTTCTCGTAGATTGTGTTATGTACGTGCCTTTTATCATGCTTATTACCTACCGTTATGTTGTCTTATATATTTTTTTCCAATTCCACTTTTATTATTATCTACAAAAAAATGGGCTGTTGTAACTTAAACGCGAATCTCTGTTTACATTCTGTATTTCTGTTCTTAGTATATTTGTGCATTTGTTTGTAAATGGATAAGTGTCTGTGCATACCTTTTATTAACTTATAGTTGGTTATTAAACATCTGTCCACCTTTTATTCGTAAATTATTGCATAATTGTAATCGACAGCTGTTATTTCACAGTGATCCTAGTCTACCCCCATGAAAGTCCGATGTTTTCTTCTCGTTGTGTTTCTTCTTTTATATTTTCTTTCTTATTAGAATAATTTTCTAAGATTGTTTTTTTATTATATCTGTATGGATTGTGTTAGAATAATTTACCTGTATGCACGTACATGCTACCTGTGTTTCTTCTATTTTTACATTGTGTTTCTTATATACATAGATATCTTAATACGTATTCTGTTGAATGATTTTCGTTTTCTGCCTGTTTTGTGTACGTTTGTGTCTTTGTTTTGTCTGTCTAACTATCCATCTGTTTTAAATTACTCAACCACGTCTATCTATGTAGTTTTGTGCTTGAATAATGGATGAACTCTTTTTGAATAAAAATATAT] [+] EMBL CD081433 [CCAANAATTCGGCACGAGGTCTGTAGAAGTGATCTTCTTACCCCCCCTCCAAATAAAGAGCAATCTCTCCTCAAAGATATTTGTCCGCTTGTACAATTCGTTGACTTTCATGCTGTTATCTTTATTATTTTCCATTTGAATTTATCCACCGTGATCTTTCGTTGCTTATTTGTTTGTTCATTGACTCTAGATATATTTGCCATGGCGTATTGATTTGGTTTTGTTCTTATCTACTTCCTGTCTTGTTGCTATCCATGTGATACCACCATTGAATGATGCTTAAAATCAGTATTTTTTTTGCTCTTTAGAATAAGTTTTGCTTAATATTCTATTTTTTTAATTAGTTTCCCGATTCTTCTCTTTTTATCTATCTACCTGTGTGTGTGTGCCTGTACTTTGTTTTAACTCCATCATCTCAAACTTTGTCGTTGCATTTTAAATTATCCCCATTAACCTATCAGTGTGTGTGTGTATACTTCTGAATGGCTTGCTAGTCAGTCTTGAAATAAGAACTAACAATAATATATAATTACTTTCTATTGTGTTTATTTTTTTTCTCGTAGATTGTGTTATGTACGTGCCTTTTATCATGCTTATTACCTACCGTTATGTTGTCTTATATATTTTTTTCCAATTCCACTTTTATTATTATCTACAAAAAAATGGGCTGTTGTAACTTAAACGCGAATCTCTGTTTACATTCTG ] [-] EMBL CD119883 [ tcttattTGTAGAAGTGATCTTCTTACCCCCCCTCCAAAAAAAGAGCAATCTCTCCTCAAAGATATTTGTCCGCTTGTACAATTCGTTGACTTTCATGCTGTTATCTTTATTATTTTCCATTTGAATTTATCCACCGTGATCTTTCGTTGCTTATTTGTTTGTTCATTGACTCTAGATATATTTGCCATGGCGTATTGATTTGGTTTTGTTCTTATCTACTTCCTGTCTTGTTGCTATCCATGTGATACCACCATTGAATGATGCTTAAAATCAGTATTTTTTTTGCTCTTTAGAATAAGTTTTGCTTAATATTCTATTTTTTTAATTAGTTTCCCGATTCTTCTCTTTTTATCTATCTACCTGTGTGTGTGTGCCTGTACTTTGTTTTAACTCCATCATCTCAAACTTTGTCGTTGCATTTTAAATTATCCCCATTAACCTATCAGTGTGTGTGTGTATACTTCTGAATGGCTTGCTAGTCAGTCTTGAAATAAGAACTAACAATAATATATAATTACTTTCTATTGTGTTTATT ] [-] EMBL CD156667 [ ACCTACCGTTATGTTGTCTTATATATTTTTTTCCAATTCCACTTTTATTATTATCTACAAAAAAATGGGCTGTTGTAACTTAAACGCGAATCTCTGTTTACATTCTGTATTTCTGTTCTTAGTATATTTGTGCATTTGTTTGTAAATGGATAAGTGTCTGTGCATACCTTTTATTAACTTATAGTTGGTTATTAAACATCTGTCCACCTTTTATTCGTAAATTATTGCATAATTGTAATCGACAGCTGTTATTTCACAGTGATCCTAGTCTACCCCCATGAAAGTCCGATGTTTTCTTCTCGTTGTGTTTCTTCTTTTATATTTTCTTTCTTATTAGAATAATTTTCTAAGATTGTTTTTTTATTATATCTGTATGGATTGTGTTAGAATAATTTACCTGTATGCACGTACATGCTACCTGTGTTTCTTCTATTTTTACATTGTGTTTCTTATATACATAGAT ] [-] EMBL CD156777 [ ACCTACCGTTATGTTGTCTTATATATTTTTTTCCAATTCCACTTTTATTATTATCTACAAAAAAATGGGCTGTTGTAACTTAAACGCGAATCTCTGTTTACATTCTGTATTTCTGTTCTTAGTATATTTGTGCATTTGTTTGTAAATGGATAAGTGTCTGTGCATACCTTTTATTAACTTATAGTTGGTTATTAAACATCTGTCCACCTTTTATTCGTAAATTATTGCATAATTGTAATCGACAGCTGTTATTTCACAGTGATCCTAGTCTACCCCCATGAAAGTCCGATGTTTTCTTCTCGTTGTGTTTCTTCTTTTATATTTTCTTTCTTATTAGAATAATTTTCTAAGATTGTTTTTTTATTATATCTGTATGGATTGTGTTAGAATAATTTACCTGTATGCACGTACATGCTACCTGTGTTTCTTCTATTTTTACATTGTGTTTCTTATATACATAGAT ] [-] EMBL CD075260 [ TTTGTAAATGGATAAGTGTCTGTGCATACCTTTTATTAACTTATAGTTGGTTATTAAACATCTGTCCACCTTTTATTCGTAAATTATTGCATAATTGTAATCGACAGCTGTTATTTCACAGTGATCCTAGTCTACCCCCATGAAAGTCCGATGTTTTCTTCTCGTTGTGTTTCTTCTTTTATATTTTCTTTCTTATTAGAATAATTTTCTAAGATTGTTTTTTTATTATATCTGTATGGATTGTGTTAGAATAATTTACCTGTATGCACGTACATGCTACCTGTGTTTCTTCTATTTTTACATTGTGTTTCTTATATACATAGATATCTTAATACGTATTCTGTTGAATGATTTTCGTTTTCTGCCTGTTTTGTGTACGTTTGTGTCTTTGTTTTGTCTGTCTAACTATCCATCTGTTTTAAATTACTCAACCACGTCTATCTATGTAGTTTTGTGCTTGAATAATGGATGAACTCTTTTTGAATAAAAATATAT] consensusID : consensus_8348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [GCTGTTGTAACTTANACGCGAATCTCTGTTCACATTCTGTATTTCTGTTCTTAGTATATTTGCGCATTTGTTTGTAAATGGATAAGTGTCTGTGCATACCTTTTATTAACTTATAGTTGGTTATTAAACATCTGTCCACCTTTTATTCGTAAATTATTGCATAATTGTAATCGACAGCTGTTATTTCACAGTGATCATAGTCTACCCCCATGAAAGTCCGATGTTTTCTTCTCGATGTGTTCCGTCTTTTAGACTTTCTTTCTTATTAGAATAATTTTCTAAGATTGTTCTTTTATTATATCTGTACGGATTGTGTTAGAATAATTTACCTGTATGCACGTACATGCTACCTGTGTTTCTTCTATTTTCACAGTGTGTTTCTTATATACATAGATGGTAAGACCCAATCGA] [-] EMBL CD067683 [GCTGTTGTAACTTANACGCGAATCTCTGTTCACATTCTGTATTTCTGTTCTTAGTATATTTGCGCATTTGTTTGTAAATGGATAAGTGTCTGTGCATACCTTTTATTAACTTATAGTTGGTTATTAAACATCTGTCCACCTTTTATTCGTAAATTATTGCATAATTGTAATCGACAGCTGTTATTTCACAGTGATCATAGTCTACCCCCATGAAAGTCCGATGTTTTCTTCTCGATGTGTTCCGTCTTTTAGACTTTCTTTCTTATTAGAATAATTTTCTAAGATTGTTCTTTTATTATATCTGTACGGATTGTGTTAGAATAATTTACCTGTATGCACGTACATGCTACCTGTGTTTCTTCTATTTTCACAGTGTGTTTCTTATATACATAGATGGTAAGACCCAATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8348#0 CCAANAATTCGGCACGAGGTCTGTAGAAGTGATCTTCTTACCCCCCCTCCAAATAAAGAG 60 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 CAATCTCTCCTCAAAGATATTTGTCCGCTTGTACAATTCGTTGACTTTCATGCTGTTATC 120 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TTTATTATTTTCCATTTGAATTTATCCACCGTGATCTTTCGTTGCTTATTTGTTTGTTCA 180 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TTGACTCTAGATATATTTGCCATGGCGTATTGATTTGGTTTTGTTCTTATCTACTTCCTG 240 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TCTTGTTGCTATCCATGTGATACCACCATTGAATGATGCTTAAAATCAGTATTTTTTTTG 300 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 CTCTTTAGAATAAGTTTTGCTTAATATTCTATTTTTTTAATTAGTTTCCCGATTCTTCTC 360 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TTTTTATCTATCTACCTGTGTGTGTGTGCCTGTACTTTGTTTTAACTCCATCATCTCAAA 420 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 CTTTGTCGTTGCATTTTAAATTATCCCCATTAACCTATCAGTGTGTGTGTGTATACTTCT 480 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 GAATGGCTTGCTAGTCAGTCTTGAAATAAGAACTAACAATAATATATAATTACTTTCTAT 540 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 TGTGTTTATTTTTTTTCTCGTAGATTGTGTTATGTACGTGCCTTTTATCATGCTTATTAC 600 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 CTACCGTTATGTTGTCTTATATATTTTTTTCCAATTCCACTTTTATTATTATCTACAAAA 660 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 AAATGGGCTGTTGTAACTTAAACGCGAATCTCTGTTTACATTCTGTATTTCTGTTCTTAG 720 consensus_8348#1 ------GCTGTTGTAACTTANACGCGAATCTCTGTTCACATTCTGTATTTCTGTTCTTAG 54 ************** *************** *********************** consensus_8348#0 TATATTTGTGCATTTGTTTGTAAATGGATAAGTGTCTGTGCATACCTTTTATTAACTTAT 780 consensus_8348#1 TATATTTGCGCATTTGTTTGTAAATGGATAAGTGTCTGTGCATACCTTTTATTAACTTAT 114 ******** *************************************************** consensus_8348#0 AGTTGGTTATTAAACATCTGTCCACCTTTTATTCGTAAATTATTGCATAATTGTAATCGA 840 consensus_8348#1 AGTTGGTTATTAAACATCTGTCCACCTTTTATTCGTAAATTATTGCATAATTGTAATCGA 174 ************************************************************ consensus_8348#0 CAGCTGTTATTTCACAGTGATCCTAGTCTACCCCCATGAAAGTCCGATGTTTTCTTCTCG 900 consensus_8348#1 CAGCTGTTATTTCACAGTGATCATAGTCTACCCCCATGAAAGTCCGATGTTTTCTTCTCG 234 ********************** ************************************* consensus_8348#0 TTGTGTTTCTTCTTTTATATTTTCTTTCTTATTAGAATAATTTTCTAAGATTGTTTTTTT 960 consensus_8348#1 ATGTGTTCCGTCTTTTAGACTTTCTTTCTTATTAGAATAATTTTCTAAGATTGTTCTTTT 294 ****** * ******* * *********************************** **** consensus_8348#0 ATTATATCTGTATGGATTGTGTTAGAATAATTTACCTGTATGCACGTACATGCTACCTGT 1020 consensus_8348#1 ATTATATCTGTACGGATTGTGTTAGAATAATTTACCTGTATGCACGTACATGCTACCTGT 354 ************ *********************************************** consensus_8348#0 GTTTCTTCTATTTTTACATTGTGTTTCTTATATACATAGATATCTTAATACGTATTCTGT 1080 consensus_8348#1 GTTTCTTCTATTTTCACAGTGTGTTTCTTATATACATAGATG--GTAAGACCCAATCGA- 411 ************** *** ********************** *** ** * ** consensus_8348#0 TGAATGATTTTCGTTTTCTGCCTGTTTTGTGTACGTTTGTGTCTTTGTTTTGTCTGTCTA 1140 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 ACTATCCATCTGTTTTAAATTACTCAACCACGTCTATCTATGTAGTTTTGTGCTTGAATA 1200 consensus_8348#1 ------------------------------------------------------------ consensus_8348#0 ATGGATGAACTCTTTTTGAATAAAAATATAT 1231 consensus_8348#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||