These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 849 fasta sequence [GTACATTTAATACTATCTAAATAATAGTAACATGACTTAATAGGATAAATACAATTGANATGTTCAACATATGATTCGAAAATAATTAGTTGCAACTATAAAACACACTAGAGAATAATTTTATGTAAAANAAATAAATGCGAAGTGCTAACAGTTAGATTTTCTGAGTTTCATTTAAATGTTTCGCGTATAATTCTTCAAATGTTGAATTTGACATACGACATGCTAACATGGATAAAACACCAGTAAGCAGACCAGGTACAGAACCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTACTTTGG-GCCAACGGAAATTCCAAATNTAATACCTCTAAGTATACAATGATCTAAGGAATGACGCGTAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAGAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCAAGCATACTGTCTAATTTTTCAGTATTGATGGCCAATAA] [+] EMBL SMAA25667 [ TACATTTAATACTATCTAAATAATAGTAACATGACTTAATAGGATAAATACAATTGANATGTTCAACATATGATTCGAAAATAATTAGTTGCAACTATAAAACACACTAGAGAATAATTTTATGTAAAANAAATAAATGCGAAGTGCTAACAGTTAGATTTTCTGAGTTTCATTTAAATGTTTCGCGTATAATTCTTCAAATGTTGAATTTGACATACGACATGCTAACATGGATAAAACACCAGTAAGCAGACCAGGTACAGAACCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAGGTTACTTTGG GCCAACGGAAATTCCAAATNTAATACCTCTAA ] [-] EMBL SM951 [gcACATTTAATCCTATCTANATAATAGTAACATGACTTAATAGGATAAANACANTTGA ATGTTCCACATATGATTCGAAAATAATTAGTT CCACNATGANACACACTAGAGAATGATTTTATGTAAAANAAATAAATGCGAAGTGCTAACAGTTAGATTTTCTGAGTTTCATTTAAATGTTTCGCGTATAATTCCTCAAATGTTGAATTTGACATACGACATGCTAACATGGATAAAACACCAGTAAGCAGACCAGGTACAGAACCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACCATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCNTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTAC ] [-] EMBL CD196428 [ AACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTACTTTGGAACCAACGGAAATTCCAAATATAATACCTCTAAGTATACAATGATCTAAGGAATGACGCGTAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAGAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCAAGCATACTGTCTAATTTTTCAGTATTGATGGCCAATAA] consensusID : consensus_8350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 771 fasta sequence [TTAAACACANATAGTTGATGATGAAAAATAAGTTATATGTTTGAATGTTTTTTGTTCAAATTAACGGTATACATCAAGAATCTTTACCTTAAGTTGTGCAAACAAAGTTTATACAATAGACTCTGGTGAGAAAACATTTAAGAGAATACAATTGGCTTGAGTTTTGATGGCAGTTAGATAAGCCTGATAGTTATTTAAACCTTCAGTTGTATGTGTAGTAGCCTAAAGAAAATCAAAACCGCATATTTAAAACAGTATGTTACTCTCTATAAGGGATCGAATAAGCGTAGAAAATAGTTATATAAAAAAATAGGATTATACCATTAATATAAGAGACACTTATCTACCCTTAACTGACCGTAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAAAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCAAGTATACTGTCTAATTTTTCAGTATTGATGGCCAATAAATCTTCATCAGTGTCTGGAATATTCATAACTAAACATGCAACAATCACAAGAG] [-] EMBL CD179086 [TTAAACACANATAGTTGATGATGAAAAATAAGTTATATGTTTGAATGTTTTTTGTTCAAATTAACGGTATACATCAAGAATCTTTACCTTAAGTTGTGCAAACAAAGTTTATACAATAGACTCTGGTGAGAAAACATTTAAGAGAATACAATTGGCTTGAGTTTTGATGGCAGTTAGATAAGCCTGATAGTTATTTAAACCTTCAGTTGTATGTGTAGTAGCCTAAAGAAAATCAAAACCGCATATTTAAAACAGTATGTTACTCTCTATAAGGGATCGAATAAGCGTAGAAAATAGTTATATAAAAAAATAGGATTATACCATTAATATAAGAGACACTTATCTACCCTTAACTGACCGTAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGG ] [-] EMBL CD098224 [ ATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAAAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCAAGTATACTGTCTAATTTTTCAGTATTGATGGCCAATAAATCTTCATCAGTGTCTGGAATATTCATAACTAAACATGCAACAATCACAAGAG] consensusID : consensus_8350#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [CCAGGTACAGACCCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTACTTTGGAACCAACGGAAATTCCCCTCGTGCCGAATTCTGG] [-] EMBL CD077419 [CCAGGTACAGACCCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTACTTTGGAACCAACGGAAATTCCCCTCGTGCCGAATTCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8350#0 GTACATTTAATACTATCTAAATAATAGTAACATGACTTAATAGGATAAATACAATTGANA 60 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 TGTTCAACATATGATTCGAAAATAATTAGTTGCAACTATAAAACACACTAGAGAATAATT 120 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 ------------------------------------------------------------ consensus_8350#0 TTATGTAAAANAAATAAATGCGAAGTGCTAACAGTTAGATTTTCTGAGTTTCATTTAAAT 180 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 -------------------------------------TTAAACACANATAGTTGATGATG 23 consensus_8350#0 GTTTCGCGTATAATTCTTCAAATGTTGAATTTGACATACGACATGCTAACATGGATAAAA 240 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 AAAAATAAGTTATATGTTTGAATGTTTTTTGTTCAAATTAACGGTATACATCAAGAATCT 83 consensus_8350#0 CACCAGTAAGCAGACCAGGTACAG---AACCAATCATTCCTGCTAT--AAGCATTCGCTT 295 consensus_8350#2 --------------CCAGGTACAG---ACCCAATCATTCCTGCTAT--AAGCATTCGCTT 41 consensus_8350#1 TTACCTTAAGTTGTGCAAACAAAGTTTATACAATAGACTCTGGTGAGAAAACATTTAAGA 143 ** * ** * **** *** * ** **** consensus_8350#0 AAATCCA--CGATTTAAG---------CAATACAATGAACTTG-TAATTCCCCAA-CCAG 342 consensus_8350#2 AAATCCA--CGATTTAAG---------CAATACAATGAACTTG-TAATTCCCCAA-CCAG 88 consensus_8350#1 GAATACAATTGGCTTGAGTTTTGATGGCAGTTAGATAAGCCTGATAGTTATTTAAACCTT 203 *** ** * ** ** ** * ** * * ** ** ** ** ** consensus_8350#0 CAGC-ATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTG 401 consensus_8350#2 CAGC-ATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTG 147 consensus_8350#1 CAGTTGTATGTGTAGTAGCCTAAAGAAAATCAAAAC-CGCATATTTAAAACAGTATGT-- 260 *** * * ****** * * ** ** * * *** *** consensus_8350#0 TAGTATCCACCAGTAAGTAAAGTTACTTTGGG-CCAAC------GGAAATTCCAAATNTA 454 consensus_8350#2 TAGTATCCACCAGTAAGTAAAGTTACTTTGGAACCAAC------GGAAATTCCCCTCGTG 201 consensus_8350#1 TACTCTCTATAAGGGATCGAATAAGCGTAGAAAATAGTTATATAAAAAAATAGGATTATA 320 ** * ** * ** * ** * * * * *** * * consensus_8350#0 ATA--CCT-CTAAGTATACAATGATCTAAGGAATGACGCGTAGCCATTTTATGGTTTGCA 511 consensus_8350#2 CCG--AAT-TCTGG---------------------------------------------- 212 consensus_8350#1 CCATTAATATAAGAGACACTTATCTACCCTTAACTGACCGTAGCCATTTTATGGTTTGCA 380 * consensus_8350#0 AAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACA 571 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 AAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACA 440 consensus_8350#0 CCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCG 631 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 CCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCG 500 consensus_8350#0 ACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGA 691 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 ACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGA 560 consensus_8350#0 TCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAGAATGATCT 751 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 TCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAAAATGATCT 620 consensus_8350#0 CTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCA 811 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 CTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCA 680 consensus_8350#0 AGCATACTGTCTAATTTTTCAGTATTGATGGCCAATAA---------------------- 849 consensus_8350#2 ------------------------------------------------------------ consensus_8350#1 AGTATACTGTCTAATTTTTCAGTATTGATGGCCAATAAATCTTCATCAGTGTCTGGAATA 740 consensus_8350#0 ------------------------------- consensus_8350#2 ------------------------------- consensus_8350#1 TTCATAACTAAACATGCAACAATCACAAGAG 771 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||