cluster # 8350

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Schistosoma mansoni
cluster # 8350 cluster # 8350 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8350#0 length = 849 sequences # 3

consensus_8350#1 length = 771 sequences # 2
consensus_8350#2 length = 212 sequences # 1

consensusID : consensus_8350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 849
fasta sequence

                              [GTACATTTAATACTATCTAAATAATAGTAACATGACTTAATAGGATAAATACAATTGANATGTTCAACATATGATTCGAAAATAATTAGTTGCAACTATAAAACACACTAGAGAATAATTTTATGTAAAANAAATAAATGCGAAGTGCTAACAGTTAGATTTTCTGAGTTTCATTTAAATGTTTCGCGTATAATTCTTCAAATGTTGAATTTGACATACGACATGCTAACATGGATAAAACACCAGTAAGCAGACCAGGTACAGAACCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTACTTTGG-GCCAACGGAAATTCCAAATNTAATACCTCTAAGTATACAATGATCTAAGGAATGACGCGTAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAGAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCAAGCATACTGTCTAATTTTTCAGTATTGATGGCCAATAA]

[+] EMBL SMAA25667            [ TACATTTAATACTATCTAAATAATAGTAACATGACTTAATAGGATAAATACAATTGANATGTTCAACATATGATTCGAAAATAATTAGTTGCAACTATAAAACACACTAGAGAATAATTTTATGTAAAANAAATAAATGCGAAGTGCTAACAGTTAGATTTTCTGAGTTTCATTTAAATGTTTCGCGTATAATTCTTCAAATGTTGAATTTGACATACGACATGCTAACATGGATAAAACACCAGTAAGCAGACCAGGTACAGAACCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAGGTTACTTTGG GCCAACGGAAATTCCAAATNTAATACCTCTAA                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL SM951                [gcACATTTAATCCTATCTANATAATAGTAACATGACTTAATAGGATAAANACANTTGA ATGTTCCACATATGATTCGAAAATAATTAGTT CCACNATGANACACACTAGAGAATGATTTTATGTAAAANAAATAAATGCGAAGTGCTAACAGTTAGATTTTCTGAGTTTCATTTAAATGTTTCGCGTATAATTCCTCAAATGTTGAATTTGACATACGACATGCTAACATGGATAAAACACCAGTAAGCAGACCAGGTACAGAACCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACCATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCNTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD196428             [                                                                                                                                                                                                                                                                                                                                                                                     AACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTACTTTGGAACCAACGGAAATTCCAAATATAATACCTCTAAGTATACAATGATCTAAGGAATGACGCGTAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAGAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCAAGCATACTGTCTAATTTTTCAGTATTGATGGCCAATAA]




>consensus_8350#0
GTACATTTAATACTATCTAAATAATAGTAACATGACTTAATAGGATAAATACAATTGANA
TGTTCAACATATGATTCGAAAATAATTAGTTGCAACTATAAAACACACTAGAGAATAATT
TTATGTAAAANAAATAAATGCGAAGTGCTAACAGTTAGATTTTCTGAGTTTCATTTAAAT
GTTTCGCGTATAATTCTTCAAATGTTGAATTTGACATACGACATGCTAACATGGATAAAA
CACCAGTAAGCAGACCAGGTACAGAACCAATCATTCCTGCTATAAGCATTCGCTTAAATC
CACGATTTAAGCAATACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGC
TTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTA
AAGTTACTTTGGGCCAACGGAAATTCCAAATNTAATACCTCTAAGTATACAATGATCTAA
GGAATGACGCGTAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAA
TTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAG
ATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAAC
GGGATCTGTTGAGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATC
TGTCAGTGAAACTGGTTTTGAAGAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGT
TTGATTATTAATAGCTTCATCTCTATCTTCAAGCATACTGTCTAATTTTTCAGTATTGAT
GGCCAATAA

consensusID : consensus_8350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 771
fasta sequence

                              [TTAAACACANATAGTTGATGATGAAAAATAAGTTATATGTTTGAATGTTTTTTGTTCAAATTAACGGTATACATCAAGAATCTTTACCTTAAGTTGTGCAAACAAAGTTTATACAATAGACTCTGGTGAGAAAACATTTAAGAGAATACAATTGGCTTGAGTTTTGATGGCAGTTAGATAAGCCTGATAGTTATTTAAACCTTCAGTTGTATGTGTAGTAGCCTAAAGAAAATCAAAACCGCATATTTAAAACAGTATGTTACTCTCTATAAGGGATCGAATAAGCGTAGAAAATAGTTATATAAAAAAATAGGATTATACCATTAATATAAGAGACACTTATCTACCCTTAACTGACCGTAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAAAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCAAGTATACTGTCTAATTTTTCAGTATTGATGGCCAATAAATCTTCATCAGTGTCTGGAATATTCATAACTAAACATGCAACAATCACAAGAG]

[-] EMBL CD179086             [TTAAACACANATAGTTGATGATGAAAAATAAGTTATATGTTTGAATGTTTTTTGTTCAAATTAACGGTATACATCAAGAATCTTTACCTTAAGTTGTGCAAACAAAGTTTATACAATAGACTCTGGTGAGAAAACATTTAAGAGAATACAATTGGCTTGAGTTTTGATGGCAGTTAGATAAGCCTGATAGTTATTTAAACCTTCAGTTGTATGTGTAGTAGCCTAAAGAAAATCAAAACCGCATATTTAAAACAGTATGTTACTCTCTATAAGGGATCGAATAAGCGTAGAAAATAGTTATATAAAAAAATAGGATTATACCATTAATATAAGAGACACTTATCTACCCTTAACTGACCGTAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGG                                                                                                                                                                                                                                                ]
[-] EMBL CD098224             [                                                                                                                                                                                                                                                                                                                                                                                  ATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAAAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCAAGTATACTGTCTAATTTTTCAGTATTGATGGCCAATAAATCTTCATCAGTGTCTGGAATATTCATAACTAAACATGCAACAATCACAAGAG]




>consensus_8350#1
TTAAACACANATAGTTGATGATGAAAAATAAGTTATATGTTTGAATGTTTTTTGTTCAAA
TTAACGGTATACATCAAGAATCTTTACCTTAAGTTGTGCAAACAAAGTTTATACAATAGA
CTCTGGTGAGAAAACATTTAAGAGAATACAATTGGCTTGAGTTTTGATGGCAGTTAGATA
AGCCTGATAGTTATTTAAACCTTCAGTTGTATGTGTAGTAGCCTAAAGAAAATCAAAACC
GCATATTTAAAACAGTATGTTACTCTCTATAAGGGATCGAATAAGCGTAGAAAATAGTTA
TATAAAAAAATAGGATTATACCATTAATATAAGAGACACTTATCTACCCTTAACTGACCG
TAGCCATTTTATGGTTTGCAAAAATAGTATATTTATTGGCACGTAAGAATTCATCATACG
ATACAAACGCACGCATTACACCTGTAATCATTCCAATAGATATACCAAGATATACAGGAA
TTTTCCGTGCTCTTCTGCCGACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTG
AGAATACAGCAAGAATACGATCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAA
CTGGTTTTGAAAAATGATCTCTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAA
TAGCTTCATCTCTATCTTCAAGTATACTGTCTAATTTTTCAGTATTGATGGCCAATAAAT
CTTCATCAGTGTCTGGAATATTCATAACTAAACATGCAACAATCACAAGAG

consensusID : consensus_8350#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence

                              [CCAGGTACAGACCCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTACTTTGGAACCAACGGAAATTCCCCTCGTGCCGAATTCTGG]

[-] EMBL CD077419             [CCAGGTACAGACCCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAATACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTACTTTGGAACCAACGGAAATTCCCCTCGTGCCGAATTCTGG]




>consensus_8350#2
CCAGGTACAGACCCAATCATTCCTGCTATAAGCATTCGCTTAAATCCACGATTTAAGCAA
TACAATGAACTTGTAATTCCCCAACCAGCAGCATGTTCCCAGTAGCTTGTTTTCCCTTGA
ACTGCGGAGAACAGTAACGGTAGAGTGTAGTATCCACCAGTAAGTAAAGTTACTTTGGAA
CCAACGGAAATTCCCCTCGTGCCGAATTCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8350#0      GTACATTTAATACTATCTAAATAATAGTAACATGACTTAATAGGATAAATACAATTGANA 60
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      ------------------------------------------------------------
                                                                                  

consensus_8350#0      TGTTCAACATATGATTCGAAAATAATTAGTTGCAACTATAAAACACACTAGAGAATAATT 120
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      ------------------------------------------------------------
                                                                                  

consensus_8350#0      TTATGTAAAANAAATAAATGCGAAGTGCTAACAGTTAGATTTTCTGAGTTTCATTTAAAT 180
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      -------------------------------------TTAAACACANATAGTTGATGATG 23
                                                                                  

consensus_8350#0      GTTTCGCGTATAATTCTTCAAATGTTGAATTTGACATACGACATGCTAACATGGATAAAA 240
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      AAAAATAAGTTATATGTTTGAATGTTTTTTGTTCAAATTAACGGTATACATCAAGAATCT 83
                                                                                  

consensus_8350#0      CACCAGTAAGCAGACCAGGTACAG---AACCAATCATTCCTGCTAT--AAGCATTCGCTT 295
consensus_8350#2      --------------CCAGGTACAG---ACCCAATCATTCCTGCTAT--AAGCATTCGCTT 41
consensus_8350#1      TTACCTTAAGTTGTGCAAACAAAGTTTATACAATAGACTCTGGTGAGAAAACATTTAAGA 143
                                     **   * **   *  ****     *** *    ** ****     

consensus_8350#0      AAATCCA--CGATTTAAG---------CAATACAATGAACTTG-TAATTCCCCAA-CCAG 342
consensus_8350#2      AAATCCA--CGATTTAAG---------CAATACAATGAACTTG-TAATTCCCCAA-CCAG 88
consensus_8350#1      GAATACAATTGGCTTGAGTTTTGATGGCAGTTAGATAAGCCTGATAGTTATTTAAACCTT 203
                       *** **   *  ** **         ** *   ** * * ** ** **    ** **  

consensus_8350#0      CAGC-ATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTG 401
consensus_8350#2      CAGC-ATGTTCCCAGTAGCTTGTTTTCCCTTGAACTGCGGAGAACAGTAACGGTAGAGTG 147
consensus_8350#1      CAGTTGTATGTGTAGTAGCCTAAAGAAAATCAAAAC-CGCATATTTAAAACAGTATGT-- 260
                      ***   * *    ****** *        *  **   ** * *     *** ***     

consensus_8350#0      TAGTATCCACCAGTAAGTAAAGTTACTTTGGG-CCAAC------GGAAATTCCAAATNTA 454
consensus_8350#2      TAGTATCCACCAGTAAGTAAAGTTACTTTGGAACCAAC------GGAAATTCCCCTCGTG 201
consensus_8350#1      TACTCTCTATAAGGGATCGAATAAGCGTAGAAAATAGTTATATAAAAAAATAGGATTATA 320
                      ** * ** *  **  *   **    * * *     *          *** *       * 

consensus_8350#0      ATA--CCT-CTAAGTATACAATGATCTAAGGAATGACGCGTAGCCATTTTATGGTTTGCA 511
consensus_8350#2      CCG--AAT-TCTGG---------------------------------------------- 212
consensus_8350#1      CCATTAATATAAGAGACACTTATCTACCCTTAACTGACCGTAGCCATTTTATGGTTTGCA 380
                             *                                                    

consensus_8350#0      AAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACA 571
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      AAAATAGTATATTTATTGGCACGTAAGAATTCATCATACGATACAAACGCACGCATTACA 440
                                                                                  

consensus_8350#0      CCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCG 631
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      CCTGTAATCATTCCAATAGATATACCAAGATATACAGGAATTTTCCGTGCTCTTCTGCCG 500
                                                                                  

consensus_8350#0      ACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGA 691
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      ACTTTATTCAATTCTTGGTCGGATAAAACGGGATCTGTTGAGAATACAGCAAGAATACGA 560
                                                                                  

consensus_8350#0      TCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAGAATGATCT 751
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      TCATAGGCAGTAGATGAATAAAGACGATCTGTCAGTGAAACTGGTTTTGAAAAATGATCT 620
                                                                                  

consensus_8350#0      CTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCA 811
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      CTTTTATCTGGAATAAGTTCTGGAACAGTTTGATTATTAATAGCTTCATCTCTATCTTCA 680
                                                                                  

consensus_8350#0      AGCATACTGTCTAATTTTTCAGTATTGATGGCCAATAA---------------------- 849
consensus_8350#2      ------------------------------------------------------------
consensus_8350#1      AGTATACTGTCTAATTTTTCAGTATTGATGGCCAATAAATCTTCATCAGTGTCTGGAATA 740
                                                                                  

consensus_8350#0      -------------------------------
consensus_8350#2      -------------------------------
consensus_8350#1      TTCATAACTAAACATGCAACAATCACAAGAG 771