cluster # 8357

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Schistosoma mansoni
cluster # 8357 cluster # 8357 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8357#0 length = 961 sequences # 3

consensus_8357#1 length = 555 sequences # 2
consensus_8357#2 length = 367 sequences # 1

consensusID : consensus_8357#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 961
fasta sequence

                              [CGAGGAACAGTATACTACCCACTTGTCAATGTCGGCTTATAGGCATTCAGTGTGATTCATTTATTATGTTCCTCTCTATCTTCTTAAAATAAAAAAATTCACTAATCTTTTTATTCATTTATGGTATTTATTTTGTTTTAATCCCTGTAGCATCATTAAACCATTTTGTTGATACTTTGAACACACTGATTAGTCATGCATTTACAGATACATGGACTACTGTTTCTAGTATGCAATCGGCTCGTATACAATATGATGCTTATCGTAATGAAATGAATCAAACAAAAAGTAGAAAACCTAATGTTAATAATAATTCTGATACTGTCACACCCACTACTACAACTAGGATCACAATGTCAGGAAATTCATTTGCCGCTGACTCGATTCACGATAGTCATAATTTACAATCACGATTAGATGCAGCTTGTGAACGGTATTCCCAGTTGAGAAAAGCTGTTCTATGTAAATTGGAATTTCTACAAGAAAACAGACTGCGCGTTATGCGACATCAACTAGTACTTCTACAGAATGCAACATCAGCATTCTTCTCTGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAATCAAATTGCCAAACGCAGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTTTCTATTTGTTACTGGTTCACTTGCATTTCTTTTATTATAATATGTAATAAACACATGTGATTACTAGTTTTGCCATATGTGTGCTGTGAGCCCATTGAGTGATATACATTCTTTTGACAGATCATTTTCAACCCATATGTATTTACACACAAGTGCAAAATTCGTGACTTCGGTGATACTAATTATGGACATTTACAGTGCTTTGGGTTTCGAACTTTTTAAATATTCTTACTGTTTTTTTTACTTGATGTGTTATTACGTTTGTATTTACTGTTTATGAAGTTGTTGCATATCTTCAAAATCTATATTTACAT]

[+] EMBL CD082330             [CGAGGAACAGTATACTACCCACTTGTCAATGTCGGCTTATAGGCATTCAGTGTGATTCATTTATTATGTTCCTCTCTATCTTCTTAAAATAAAAAAATTCACTAATCTTTTTATTCATTTATGGTATTTATTTTGTTTTAATCCCTGTAGCATCATTAAACCATTTTGTTGATACTTTGAACACACTGATTAGTCATGCATTTACAGATACATGGACTACTGTTTCTAGTATGCAATCGGCTCGTATACAATATGATGCTTATCGTAATGAAATGAATCAAACAAAAAGTAGAAAACCTAATGTTAATAATAATTCTGATACTGTCACACCCACTACTACAACTAGGATCACAATGTCAGGAAATTCATTTGCCGCTGACTCGATTCACGATAGTCATAATTTACAATCACGATTAGATGCAGCTTGTGAACGGTATTCCCAGTTGAGAAAAGCTGTTCTATGTAAATTGGAATTTCTACAAGAAAACAGACTGCGCGTTATGCGACATCAACTAGTACTTCTACAGAATGCAACATCAGCATTCTTCTCTGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAATCAAATTGCCAAACGCAGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTTTC                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BG930450             [                                                                                                                                                                                                                                                                                                                                                                                           tTCGATTCACGATAGTCATAATTTACAATCACGATTAGATGCAGCTTGTGAACGGTATTCCCAGTTGAGAAAAGCTGTTCTATGTAAATTGGAATTTCTACAAGAAAACAGACTGCGCGTTATGCGACATCAACTAGTACTTCTACAGAATGCAACATCAGCATTCTTCTCTGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAATCAAATTGCCAAACGCAGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTTTCTATTTGTTACTGGTTCACTTGCATTTCTTTTATTATAATATGTAATAAACACATGTGATTACTAGTTTTGCCATATGTGTGCTGTGA                                                                                                                                                                                                                                 ]
[-] EMBL CD075929             [                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGCAGCTTGTGAACGGTATTCCCAGTTGAGAAAAGCTGTTCTATGTAAATTGGAATTTCTACAAGAAAACAGACTGCGCGTTATGCGACATCAACTAGTACTTCTACAGAATGCAACATCAGCATTCTTCTCTGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAATCAAATTGCCAAACGCAGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTTTCTATTTGTTACTGTTTCACTTGCATTTCTTTTATTATAATATGTAATAAACACATGTGATTACTAGTTTTGCCATATGTGTGCTGTGAGCCCATTGAGTGATATACATTCTTTTGACAGATCATTTTCAACCCATATGTATTTACACACAAGTGCAAAATTCGTGACTTCGGTGATACTAATTATGGACATTTACAGTGCTTTGGGTTTCGAACTTTTTAAATATTCTTACTGTTTTTTTTACTTGATGTGTTATTACGTTTGTATTTACTGTTTATGAAGTTGTTGCATATCTTCAAAATCTATATTTACAT]




>consensus_8357#0
CGAGGAACAGTATACTACCCACTTGTCAATGTCGGCTTATAGGCATTCAGTGTGATTCAT
TTATTATGTTCCTCTCTATCTTCTTAAAATAAAAAAATTCACTAATCTTTTTATTCATTT
ATGGTATTTATTTTGTTTTAATCCCTGTAGCATCATTAAACCATTTTGTTGATACTTTGA
ACACACTGATTAGTCATGCATTTACAGATACATGGACTACTGTTTCTAGTATGCAATCGG
CTCGTATACAATATGATGCTTATCGTAATGAAATGAATCAAACAAAAAGTAGAAAACCTA
ATGTTAATAATAATTCTGATACTGTCACACCCACTACTACAACTAGGATCACAATGTCAG
GAAATTCATTTGCCGCTGACTCGATTCACGATAGTCATAATTTACAATCACGATTAGATG
CAGCTTGTGAACGGTATTCCCAGTTGAGAAAAGCTGTTCTATGTAAATTGGAATTTCTAC
AAGAAAACAGACTGCGCGTTATGCGACATCAACTAGTACTTCTACAGAATGCAACATCAG
CATTCTTCTCTGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAATCAAAT
TGCCAAACGCAGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTTTCTATTTGTTACT
GGTTCACTTGCATTTCTTTTATTATAATATGTAATAAACACATGTGATTACTAGTTTTGC
CATATGTGTGCTGTGAGCCCATTGAGTGATATACATTCTTTTGACAGATCATTTTCAACC
CATATGTATTTACACACAAGTGCAAAATTCGTGACTTCGGTGATACTAATTATGGACATT
TACAGTGCTTTGGGTTTCGAACTTTTTAAATATTCTTACTGTTTTTTTTACTTGATGTGT
TATTACGTTTGTATTTACTGTTTATGAAGTTGTTGCATATCTTCAAAATCTATATTTACA
T

consensusID : consensus_8357#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 555
fasta sequence

                              [GGGAATTGGCCCTCAGGCCCAGATCGGCACGAGGTACTTGTGATCAGGAATTAGAGAATCGAATTTCAATGTTTAGAAATATGCATCAACAGTATAAACTATTGCATAACCTCGCTGAAAAGTTAGCTAATAGTTTTCGTGAAACTATTCATCACCAACGTGCATTTACGAGTCATATGACTACTTTAATTGTACAGCAGCCTGATTTAAGCAGTGAATTCACCTATAATACAGAAACCCAACGTATCGTTATATCAAATGGAGAAAAATTATTGGCATCATTAAACCATTTTGTTGATACTTTGAACACACTGATTAGTCATGCATTTACAGATACATGGACTACTGTTTCTAGTATGCAATCGGCTCGTATACAATATGATGCTTATCGTAATGAAATGAATCAAACAAAAAGTAGAAAACCTAATGTTAATAATAATTCTGATACTGTCACACCCACTACTACAACTAGGATCACAATGTCAGGAAATTCATAAACCGCTGACTCGATTCACGATAGTCATAATTTACAATCACGATTAGAGCAGCTTGGAA]

[+] EMBL CD084006             [GGGAATTGGCCCTCAGGCCCAGATCGGCACGAGGTACTTGTGATCAGGAATTAGAGAATCGAATTTCAATGTTTAGAAATATGCATCAACAGTATAAACTATTGCATAACCTCGCTGAAAAGTTAGCTAATAGTTTTCGTGAAACTATTCATCACCAACGTGCATTTACGAGTCATATGACTACTTTAATTGTACAGCAGCCTGATTTAAGCAGTGAATTCACCTATAATACAGAAACCCAACGTATCGTTATATCAAATGGAGAAAAATTATTGGCATCATTAAACCATTTTGTTGATACTTTGAACACACTGATTAGTCATGCATTTACAGATACATGGACTACTGTTTCTAGTATGCAATCGGCTCGTATACAATATGATGCTTATCGTAATGAAATGAATCAAACAAAAAGTAGAAAACCTAATGTTAATAATAATTCTGATACTGTCACACCCACTACTACAACT                                                                                     ]
[-] EMBL CD061013             [                                                                                                                                                                                                                                       CAGGAACCCAACGTATCGTTATATCAAATGGAGAAAAATTATTGGCATCATTAAACCTTTTTGTTGATACTTTGAACACACTGATTAGTCATGCATTTACAGATACATGGACTACTGTTTCTAGTATGCAATCGGCTCGTATACAATATGATGCTTATCGTAATGAAATGAATCAAACAAAAAGTAGAAAACCTAATGTTAATAATAATTCTGATACTGTCACACCCACTACTACAACTAGGATCACAATGTCAGGAAATTCATAAACCGCTGACTCGATTCACGATAGTCATAATTTACAATCACGATTAGAGCAGCTTGGAA]




>consensus_8357#1
GGGAATTGGCCCTCAGGCCCAGATCGGCACGAGGTACTTGTGATCAGGAATTAGAGAATC
GAATTTCAATGTTTAGAAATATGCATCAACAGTATAAACTATTGCATAACCTCGCTGAAA
AGTTAGCTAATAGTTTTCGTGAAACTATTCATCACCAACGTGCATTTACGAGTCATATGA
CTACTTTAATTGTACAGCAGCCTGATTTAAGCAGTGAATTCACCTATAATACAGAAACCC
AACGTATCGTTATATCAAATGGAGAAAAATTATTGGCATCATTAAACCATTTTGTTGATA
CTTTGAACACACTGATTAGTCATGCATTTACAGATACATGGACTACTGTTTCTAGTATGC
AATCGGCTCGTATACAATATGATGCTTATCGTAATGAAATGAATCAAACAAAAAGTAGAA
AACCTAATGTTAATAATAATTCTGATACTGTCACACCCACTACTACAACTAGGATCACAA
TGTCAGGAAATTCATAAACCGCTGACTCGATTCACGATAGTCATAATTTACAATCACGAT
TAGAGCAGCTTGGAA

consensusID : consensus_8357#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [AGACGGGGGGTCAATTCACGATAGTCATAATTTCCAATCACGATTAGATGCAGCTTGTGAACGGTATTCCCAGTTGAGAAAAGCTGTTCTATGTAAATTGGAATTTCTACAAAAAAGCAGACTGCGCGTTATGCGACATCAACTAGTACTTCTACAGAATGCAACATCAGCATTCTTCTCTGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAATCAAATTGCCAAACGCAGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTTTCTATTTGTTACTGTTTCACTTGCATTTCTTTTATTATAATATGTAATAAACACATGTGATTACTAGTTTTGCCATATGTGTGCTGTGAT]

[-] EMBL BG930373             [AGACGGGGGGTCAATTCACGATAGTCATAATTTCCAATCACGATTAGATGCAGCTTGTGAACGGTATTCCCAGTTGAGAAAAGCTGTTCTATGTAAATTGGAATTTCTACAAAAAAGCAGACTGCGCGTTATGCGACATCAACTAGTACTTCTACAGAATGCAACATCAGCATTCTTCTCTGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAATCAAATTGCCAAACGCAGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTTTCTATTTGTTACTGTTTCACTTGCATTTCTTTTATTATAATATGTAATAAACACATGTGATTACTAGTTTTGCCATATGTGTGCTGTGAT]




>consensus_8357#2
AGACGGGGGGTCAATTCACGATAGTCATAATTTCCAATCACGATTAGATGCAGCTTGTGA
ACGGTATTCCCAGTTGAGAAAAGCTGTTCTATGTAAATTGGAATTTCTACAAAAAAGCAG
ACTGCGCGTTATGCGACATCAACTAGTACTTCTACAGAATGCAACATCAGCATTCTTCTC
TGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAATCAAATTGCCAAACGC
AGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTTTCTATTTGTTACTGTTTCACTTG
CATTTCTTTTATTATAATATGTAATAAACACATGTGATTACTAGTTTTGCCATATGTGTG
CTGTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8357#0      CGAGGAACAGTATACTACCCACTTGTCAATGTCGGCTTATAGGCATTCAGTGTGATTCAT 60
consensus_8357#2      ------------------------------------------------------------
consensus_8357#1      ------------------------------------------------------------
                                                                                  

consensus_8357#0      TTATTATGTTCCTCTCTATCTTCTTAAAATAAAAAAATTCACTAATCTTTTTATTCATTT 120
consensus_8357#2      ------------------------------------------------------------
consensus_8357#1      ------------------------------------------------------------
                                                                                  

consensus_8357#0      ATGGTATTTATTTTGTTTTAATCCCTGTAGCATCATTAAACCATTTTGTTGATACTTTGA 180
consensus_8357#2      ------------------------------------------------------------
consensus_8357#1      ------------------------------------------------------------
                                                                                  

consensus_8357#0      ACACACTGATTAGTCATGCATTTACAGATACATGGACTACTGTTTCTAGTATGCAATCGG 240
consensus_8357#2      ------------------------------------------------------------
consensus_8357#1      ------------------------------------------------------------
                                                                                  

consensus_8357#0      CTCGTATACAATATGATGCTTATCGTAATGAAATGAATCAAACAAAAAGTAGAAAACCTA 300
consensus_8357#2      ------------------------------------------------------------
consensus_8357#1      ------------------------------------------------------------
                                                                                  

consensus_8357#0      ATGTTAATAATAATTCTGATACTGTCACACCCACTACTACAACTAGGATCACAATGTCAG 360
consensus_8357#2      ------------------------------------------------------------
consensus_8357#1      --------------------------------------------GGGAATTGGCCCTCAG 16
                                                                                  

consensus_8357#0      GAAATTCATTTGCCGCTGACTCGATTCACGATAGTCATAATTTACAATCACGAT---TAG 417
consensus_8357#2      ----------AGACGGGGGGTCAATTCACGATAGTCATAATTTCCAATCACGAT---TAG 47
consensus_8357#1      GCCCAGATCGGCACGAGGTACTTGTGATCAGGAATTAGAGAATCGAATTTCAATGTTTAG 76
                                   **  *      *   *   * * * *   *  ***  * **   ***

consensus_8357#0      ATGCAGCTTGTGAACGGTATTCCCAGTTGAGAAAAGCTGTTCTATG--TAAATTGGAATT 475
consensus_8357#2      ATGCAGCTTGTGAACGGTATTCCCAGTTGAGAAAAGCTGTTCTATG--TAAATTGGAATT 105
consensus_8357#1      AAATA-TGCATCAACAGTATAAACTATTGCATAACCTCGCTGAAAAGTTAGCTAATAGTT 135
                      *   *     * *** ****   *  ***   **    * *  *    **  *   * **

consensus_8357#0      TCTACAAGAAAACAGACTGCGCGTTATGCGACATCAACTAGTACTTCTACAG-AATGCAA 534
consensus_8357#2      TCTACAAAAAAGCAGACTGCGCGTTATGCGACATCAACTAGTACTTCTACAG-AATGCAA 164
consensus_8357#1      TTCGTGAAACTATTCATCAC-CAACGTGCATTTACGAGTCATATGACTACTTTAATTGTA 194
                      *     * *      *   * *    ***     * * *  **   ****   ***   *

consensus_8357#0      CATCAGCATTCTTCTCTGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAA 594
consensus_8357#2      CATCAGCATTCTTCTCTGGAAATAATCAACAATTGGATCAAATTCTAAACCAGTATAAAA 224
consensus_8357#1      CAGCAGCCTGATTTAAGCAGTGAATTCACCTATAATACAGAAACCCAACGTATCGTTATA 254
                      ** **** *  **          * *** * **   *   **  * **   *   * * *

consensus_8357#0      TCAAATTGCCAAACGCAGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTT--TCTAT 652
consensus_8357#2      TCAAATTGCCAAACGCAGAAAATGGAGTTAGCCACTAACTAGTTCTCTCTTTT--TCTAT 282
consensus_8357#1      TCAAATGGAGAAAAATTATTGGCATCATTAA--ACCATTTTGTTGATACTTTGAACACAC 312
                      ****** *  ***              ***   ** *  * ***    ****      * 

consensus_8357#0      TTGTTACTGGTTCACTTGCATTT-------CTTTTATTA-TAATATGTAATAAACACATG 704
consensus_8357#2      TTGTTACTGTTTCACTTGCATTT-------CTTTTATTA-TAATATGTAATAAACACATG 334
consensus_8357#1      TGATTAGTCATGCATTTACAGATACATGGACTACTGTTTCTAGTATGCAATCGGCTCGTA 372
                      *  *** *  * ** ** **  *       **  * **  ** **** ***   * * * 

consensus_8357#0      TG-ATTACTAGTTTTGCCATATGTGTGCTGTGAGCCCATTGAGTGATATACATTCTTTTG 763
consensus_8357#2      TG-ATTACTAGTTTTGCCATATGTGTGCTGTGAT-------------------------- 367
consensus_8357#1      TACAATATGATGCTTATCGTA-ATGAAATGAATCAAACAAAAAGTAGAAAACCTAATGTT 431
                      *  * **  *   **  * **  **   **                              

consensus_8357#0      ACAGATCATTTTCAACCCATATGTATTTACACACAAGTGCAAAATTCGTGACTTCGGTGA 823
consensus_8357#2      ------------------------------------------------------------
consensus_8357#1      AATAATAATTCTGATACTGTCACACCCACTACTACAACTAGGATCACAATGTCAGGAAAT 491
                                                                                  

consensus_8357#0      TACTAATTATGGACATTTACAGTGCTTTGGGTTTCGAACTTTTTAAATATTCTTACTGTT 883
consensus_8357#2      ------------------------------------------------------------
consensus_8357#1      TCATAAACCGCTGACTCGATTCACGATAGTCATAATTTACAATCACGATTAGAGCAGCTT 551
                                                                                  

consensus_8357#0      TTTTTTACTTGATGTGTTATTACGTTTGTATTTACTGTTTATGAAGTTGTTGCATATCTT 943
consensus_8357#2      ------------------------------------------------------------
consensus_8357#1      GGAA-------------------------------------------------------- 555
                                                                                  

consensus_8357#0      CAAAATCTATATTTACAT 961
consensus_8357#2      ------------------
consensus_8357#1      ------------------