cluster # 8368

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Schistosoma mansoni
cluster # 8368 cluster # 8368 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8368#0 length = 713 sequences # 5

consensus_8368#1 length = 156 sequences # 1

consensusID : consensus_8368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 713
fasta sequence

                              [AAATAACTGGTAAGACTCGGTGCAGGCACCAAAAATTTATATCAGCCTCAGCAGAGGATTCATCTGCATTAGATGTGCCATTACAGCTGGGTCTTTGTTGTTAAATATTGAGCTTCATTCTTCTTTATTCATTAAACTATCCTTGGAATTAGTGGTCACACACATTCTTTTATAAAAGAAAGCACTTAGGATCCATTGGCTCAGTCCACTTATATTATTAGAAATTTAGAATTGGTTGCTTGCAGTAATACATTGCTTATTTTCTTTGGGCAATAGTTTGCAATGAAACCCACACC-AAAAAAAAATAGTCGAGATATCAAAGTATATCTTTTCTTATGACTATTCACTAGAAACGCTAGACGCAAAGTGACTTTATTTGCTAAACTTT-AAAAAAAAAGGAATACAGTAGCACTGGTATTTATCTTTCCATATCTTGTGCTTTTTACTAATAAAATAATATTTTACTGTTAAATTGTTCCATAAAATTATTTTCAACCCACAGATCACTGACTCTTTTGCGGGTTAATACGTATGTTGCTCTTTAGATAGG-ATACTATTCCAAATATTGGGCCATCTTAAAATATTTTGACTTTTTAAACTTTGGTAGTACGTACTTTAAAATTAAGACTGGTATGTTTTGTTAAAAAACCAC-TATTAAGTTCAGTATTAATATGCCTTGTTGGGAAAT-ATTAGCTGGGACTTTAAGTTGACCA]

[+] EMBL CD145262             [AAGTAACTGGTAAGACTCGGTGCAGGCACCAAAAATTTATATCAGCCTCAGCAGAGGATTCATCTGCATTAGATGTGCCATTACAGCTGGGTCTTTGTTGTTAAATATTGAGCTTCATTCTTCTTTATTCATTAAACTATCCTTGGAATTAGTGGTCACACACATTCTTTTATAAAAGAAAGCACTTAGGATCCATTGGCTCAGTCCACTTATATTATTAGAAATTTAGAATTGGTTGCTTGCAGTAATACATTGCTTATTTTCTTTGGGCAATAGTTTGCAATGAAACCCACACC AAAAAAAAATAGTCGAGATATCAAAGTATATCTTTTCTTATGACTATTCACTAGAAACGCT                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD145172             [ AATAACTGGTAAGACTCGGTGCAGGCACCAAAAATTTATATCAGCCTCAGCAGAGGATTCATCTGCATTAGATGTGCCATTACAGCTGGGTCTTTGTTGTTAAATATTGGGCTTCATTCTTCTTTATTCATTAAACTATCCTTGGAATTAGTGGTCACACACATTCTTTTATAAAAGAAAGCACTTAGGATCCATTGGCTCAGTCCACTTATATTATTAAAAATTTAAAATTGGTTGCTTGCAGTAATACATTGCTTATTTTCTTTGGGCAATAGTTTGCAATGAAACCCACACCAAAAAAAAAATAGTCGAAATATCAAAGTATATCTTTTCTTATGACTATTCACTAAAAACGCTAAACGCAAAGTGACTTTATTTGCTAAACTTT AAAAAAAAAGGAATACAGTAGCACTGGTATTTATCTTTCCATATCTGGGGCTTTTTACTAATAAAATAATATTTTACTGTTAAATGGTTCCATAAAATTATCTTCAACCCACAGATCACTGACTCTTTTGCGGGTTAATACGTATGTTGCTCTTTAGATAGG ATACTATTCCAAATATTGGGCCATCTTAAAATATTTTGACTTTTTAAACTTTGGTAGTACGTACTTTAAAATTAAGACTGGTATGTTTTGTTAAAAAACCAC TATTAAGTTCAGTATTAATATGCCTTGTTGGGAAAT ATTAGCTGGGACTTTAAGTTGAC  ]
[+] EMBL CD145222             [ AATAACTGGTAAGACTCGGTGCAGGCACCAAAAATTTATATCAGCCTCAGCAGAGGATTCATCTGCATTAGATGTGCCATTACAGCTGGGTCTTTGTTGTTAAATATTGTGCTTCATTCTTCTTTATTCATTAAACTACCCTTGGAATTAGTGGTCACACACATTCTTTTATAAAAGAAAGCACTTAGGATCCATTGGCTCAGTCCACTTATATTATTAGAAACTTAGAGTTGGTTGCTTGCAGTAATACATTGCTTATTTTCTTTGGGCGATAGTTTGCAATGAAACCCACACC AAAAAAAAATAGTCGAGATATCAAAGTATATCTTTTCTTATGACTACTCACTAGAAACGCTAGACGCAAAGTGACTTTATTTGCTAAACTTT AAAAAAAAA                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD145201             [                                                                                                                                                                                                                                                                           GGGCAATAGTTTGCAATGAAACCCACACC  AAAAAAAATAGTCGAGATATCAAAGTATATCTTTTCTTATGACTATTCACTAGAAACGCTAGACGCAAAGTGACTTTATTTGCTAAACTTTAAAAAAAAAAGGAATACAGTAGCACTGGTATTTATCTTTCCATATCTTGTGCTTTTTACTAATAAAATAATATTTGACTGTTCAATTGTTCCATAAGATTATTTTCAA                                                                                                                                                                                                                             ]
[-] EMBL CD145282             [                                                                                                                                                                                                                                                                                                CCCACACC AAAAAAAAATAGTCGAGATATCAAAGTATATCTTTTCTTATGACTATTCACTAGAAACGCTAGACGCAAAGTGACTTTATTTGCTAAACTTTAAAAAAAAAAGGAATACAGTAGCACTGGTATTTATCTTTCCATATCTTGTGCTTTTTACTAATAAAATAATATTTTACTGTTAAATTGTTCCATAAAATTATTTTCAACCCACAGATCACTGACTCTTTTGCGGGTTAATACGTATGTTGCTCTTTAAATAGGAATACTATTCCAAATATTGGGCCATCTTAAAATATTTTGACTTTTTAAACTTTGGTAGTACGTACTTTTAAATTAAGACTTGTATGTTTTGTTTAAAAACCACATATTAAGTTCAGTATTAATATGCC TGTTGTGAAATAATTAGCTGGGACCTTCAGTTGACCA]




>consensus_8368#0
AAATAACTGGTAAGACTCGGTGCAGGCACCAAAAATTTATATCAGCCTCAGCAGAGGATT
CATCTGCATTAGATGTGCCATTACAGCTGGGTCTTTGTTGTTAAATATTGAGCTTCATTC
TTCTTTATTCATTAAACTATCCTTGGAATTAGTGGTCACACACATTCTTTTATAAAAGAA
AGCACTTAGGATCCATTGGCTCAGTCCACTTATATTATTAGAAATTTAGAATTGGTTGCT
TGCAGTAATACATTGCTTATTTTCTTTGGGCAATAGTTTGCAATGAAACCCACACCAAAA
AAAAATAGTCGAGATATCAAAGTATATCTTTTCTTATGACTATTCACTAGAAACGCTAGA
CGCAAAGTGACTTTATTTGCTAAACTTTAAAAAAAAAGGAATACAGTAGCACTGGTATTT
ATCTTTCCATATCTTGTGCTTTTTACTAATAAAATAATATTTTACTGTTAAATTGTTCCA
TAAAATTATTTTCAACCCACAGATCACTGACTCTTTTGCGGGTTAATACGTATGTTGCTC
TTTAGATAGGATACTATTCCAAATATTGGGCCATCTTAAAATATTTTGACTTTTTAAACT
TTGGTAGTACGTACTTTAAAATTAAGACTGGTATGTTTTGTTAAAAAACCACTATTAAGT
TCAGTATTAATATGCCTTGTTGGGAAATATTAGCTGGGACTTTAAGTTGACCA

consensusID : consensus_8368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [AAGTAACTGGTAAGACTTGGGGCCGGCCCCAAAAATTTATATCATCCTCAGCAGAGGATTCATCTGCATTAAATGTGCCATTACAGCTGGGGCTTTGTAGTTAAATATTGGGCTTCATTCTTCTTTATTACATAAAACTATCCTTGGAATTAATGG]

[+] EMBL CD145304             [AAGTAACTGGTAAGACTTGGGGCCGGCCCCAAAAATTTATATCATCCTCAGCAGAGGATTCATCTGCATTAAATGTGCCATTACAGCTGGGGCTTTGTAGTTAAATATTGGGCTTCATTCTTCTTTATTACATAAAACTATCCTTGGAATTAATGG]




>consensus_8368#1
AAGTAACTGGTAAGACTTGGGGCCGGCCCCAAAAATTTATATCATCCTCAGCAGAGGATT
CATCTGCATTAAATGTGCCATTACAGCTGGGGCTTTGTAGTTAAATATTGGGCTTCATTC
TTCTTTATTACATAAAACTATCCTTGGAATTAATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8368#0      AAATAACTGGTAAGACTCGGTGCAGGCACCAAAAATTTATATCAGCCTCAGCAGAGGATT 60
consensus_8368#1      AAGTAACTGGTAAGACTTGGGGCCGGCCCCAAAAATTTATATCATCCTCAGCAGAGGATT 60
                      ** ************** ** ** *** **************** ***************

consensus_8368#0      CATCTGCATTAGATGTGCCATTACAGCTGGGTCTTTGTTGTTAAATATTGAGCTTCATTC 120
consensus_8368#1      CATCTGCATTAAATGTGCCATTACAGCTGGGGCTTTGTAGTTAAATATTGGGCTTCATTC 120
                      *********** ******************* ****** *********** *********

consensus_8368#0      TTCTTTATT-CATTAAACTATCCTTGGAATTAGTGGTCACACACATTCTTTTATAAAAGA 179
consensus_8368#1      TTCTTTATTACATAAAACTATCCTTGGAATTAATGG------------------------ 156
                      ********* *** ****************** ***                        

consensus_8368#0      AAGCACTTAGGATCCATTGGCTCAGTCCACTTATATTATTAGAAATTTAGAATTGGTTGC 239
consensus_8368#1      ------------------------------------------------------------
                                                                                  

consensus_8368#0      TTGCAGTAATACATTGCTTATTTTCTTTGGGCAATAGTTTGCAATGAAACCCACACCAAA 299
consensus_8368#1      ------------------------------------------------------------
                                                                                  

consensus_8368#0      AAAAAATAGTCGAGATATCAAAGTATATCTTTTCTTATGACTATTCACTAGAAACGCTAG 359
consensus_8368#1      ------------------------------------------------------------
                                                                                  

consensus_8368#0      ACGCAAAGTGACTTTATTTGCTAAACTTTAAAAAAAAAGGAATACAGTAGCACTGGTATT 419
consensus_8368#1      ------------------------------------------------------------
                                                                                  

consensus_8368#0      TATCTTTCCATATCTTGTGCTTTTTACTAATAAAATAATATTTTACTGTTAAATTGTTCC 479
consensus_8368#1      ------------------------------------------------------------
                                                                                  

consensus_8368#0      ATAAAATTATTTTCAACCCACAGATCACTGACTCTTTTGCGGGTTAATACGTATGTTGCT 539
consensus_8368#1      ------------------------------------------------------------
                                                                                  

consensus_8368#0      CTTTAGATAGGATACTATTCCAAATATTGGGCCATCTTAAAATATTTTGACTTTTTAAAC 599
consensus_8368#1      ------------------------------------------------------------
                                                                                  

consensus_8368#0      TTTGGTAGTACGTACTTTAAAATTAAGACTGGTATGTTTTGTTAAAAAACCACTATTAAG 659
consensus_8368#1      ------------------------------------------------------------
                                                                                  

consensus_8368#0      TTCAGTATTAATATGCCTTGTTGGGAAATATTAGCTGGGACTTTAAGTTGACCA 713
consensus_8368#1      ------------------------------------------------------