These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 451 fasta sequence [GTGATAAATCGCGACTTCGTGCCTATTTAACGAGAGGCTTGGTCGCAGTGGAGAAAAAGAAAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAAAAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATCTCGTAATCTTTGAGTTTCATTCCTAGTATTCAATCTACGGTTGTGTCGTTATTCTGGATTTCTATTTTTCTCGCTAACCTCCTGTCTTTATAAGTCTATCAGTTTGTACTTTTCAGAGTAATATTAGGACTAATACTATTTCA] [+] EMBL CD083670 [GTGATAAATCGCGACTTCGTGCCTATTTAACGAGAGGCTTAGTCGCAGTGGAGAAAAAGAAAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAAAAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATCTCGTAATCTTTGAGTTTCATTCCTAGTATTCAATCTACGGTTGTGTCGTTATTCTGGATTTCTATTTTTCTCGCTAACCTCCTGTCTTTATAAGTCTATCAGTTTGTACTTTTCAGAGTAATATTAGGACTAATACTATTTCA] [-] EMBL CD191299 [ GGCTTGGTCGCAGTGGAGAAAAAGAAAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAAAAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATGGCGAAATCTTTGA ] [-] EMBL CD191248 [ GGCTTGGTCGCAGTGGAGAAAAAGAAAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAAAAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATCTCGTAATCTTTGA ] [+] EMBL SM746 [ TTTACGAACTCGCCTGAGTGAATGCGGNTGGAGCGAAGAACTAAAAAGCCATTGNCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTTGGNAGCTGAAATTA CCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCTACTGGATGAAATCCGAAG TGTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAAATCGTATCTCGTAATCTTTGAGTTTCATTCCTAGTATTCAATCTACGGTNGTGTCGGTATTCTGGA TTCTA TTTTCTCGCTAACC CCTGTCTTTATTAGTCTATCAGT ] consensusID : consensus_8390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 224 fasta sequence [ACCGACTGGGGTAATTTCAGCTACCAAATCATCTACCGTTAGATTTTCAATCCCGCGTTCTCGAATAACATCTGAAATATGGAGATGGAGAGAGTATTCATTCAAGTTAAATATACAGATAGGCTCGAGATACTACAATAGAAGGCAAAATTATGGTTTAACTATATGTGATTAAAACAGATTTCAATGACTCTAGGTTGATGAGGCTGCGAAAGTTAAATTAC] [+] EMBL CD192401 [ACCGACTGGGGTAATTTCAGCTACCAAATCATCTACCGTTAGATTTTCAATCCCGCGTTCTCGAATAACATCTGAAATATGGAGATGGAGAGAGTATTCATTCAAGTTAAATATACAGATAGGCTCGAGATACTACAATAGAAGGCAAAATTATGGTTTAACTATATGTGATTAAAACAGATTTCAATGACTCTAGGTTGATGAGGCTGCGAAAGTTAAATTAC] [+] EMBL CD192425 [ACCGACTGGGGTAATTTCAGCTACCAAATCATCTACCGTTAGATTTTCAATCCCGCGTTCTCGAATAACATCTGAAATATGGAGATGGAGAGAGTATTCATTCAAGTTAAATATACAGATAGGCTCGAGATACTACAATAGAAGGCAAAATTATGGTTTAACTATATGTGATTAAAACAGATTTCAATGACTCTAGGTTGATGAGGCTGCGAAAGTTAAATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8390#0 GTGATAAATCGCGACTTCGTGCCTATTTAACGAGAGGCTTGGTCGCAGTGGAGAAAAAGA 60 consensus_8390#1 ------------------------------------------------------------ consensus_8390#0 AAAACTGAAAGACCTTTTACGAACTCGCCTGAGTGAATGCGGCTGGAGCGAAGAACTAAA 120 consensus_8390#1 ----------------------ACCGACTGGGGTAATTTCAGCTACCA-AATCATCTACC 37 ** * * ** * * * *** * * *** consensus_8390#0 AAGCCATTGCCGAGATGTTATTCGAGAACGCGGGATTGAAAATCTAACGGTAGATGATTT 180 consensus_8390#1 GTTAGATTTTCAATCCCGCGTTCTCGAATA--ACATCTGAAATATGGAGATGGAGAGAGT 95 *** * * *** *** ** **** * * * ** * consensus_8390#0 GGTAGCTGAAATTACCCCAGTCGGTCGACGTATGGTACCAGACACAGTAAAGCAAGAGCT 240 consensus_8390#1 ATTCATTCAAGTTAAATATACAGATAGGCTCGAGATACTACA-ATAG-AAGGCAAAA--T 151 * * ** *** * * * * * *** * * * ** ** **** * * consensus_8390#0 ACTGGATGAAATCCGAAGTTTTTTGAGCAAAGAAACAGATATACTTTGACCGTTAGGCAA 300 consensus_8390#1 TATGGTTTAACTA------TATGTGATTAAA---ACAGAT-TTCAATGACT-CTAGGTTG 200 *** * ** * * * *** *** ****** * * **** **** consensus_8390#0 ATCGTATCTCGTAATCTTTGAGTTTCATTCCTAGTATTCAATCTACGGTTGTGTCGTTAT 360 consensus_8390#1 ATGAGGCTGCGAAA--GTTAAATTAC---------------------------------- 224 ** ** ** ** * ** * consensus_8390#0 TCTGGATTTCTATTTTTCTCGCTAACCTCCTGTCTTTATAAGTCTATCAGTTTGTACTTT 420 consensus_8390#1 ------------------------------------------------------------ consensus_8390#0 TCAGAGTAATATTAGGACTAATACTATTTCA 451 consensus_8390#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||