cluster # 8392

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Schistosoma mansoni
cluster # 8392 cluster # 8392 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8392#0 length = 614 sequences # 2

consensus_8392#1 length = 460 sequences # 4

consensusID : consensus_8392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 614
fasta sequence

                              [AAAGTTTTTCAAGTTGATGGTTAAAACATGGAGTGAAGATGAAGAATTCACGAAGACTCCTGGCCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGG-CTTGTGTATCAAACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTCAGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCATATATACATG-CTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTTCCAAGAATAAAGAAG-ATATTCAGTCTGTGGCTAACTGGCAGTTTGTTTGTAGCCTTCGCCTATGGTGCGATTTCACTTCAAGATATGCAGATGTACATGCTTTGATAAAGTCACTTATTCATCCACT-AAGTCAACTGGTATATGGAACAATCAAGTTAAATAAAGGTCAAACGTTGTTACCGTTGCATTTTCATTGCATTTCTATGCTTCATAACATGCCTGAGTTCCTGTTCTATGTGAAGCAAATTTGTCAGAAGGGAAGCAACGTTAGTGGAAAATAACGATCTCCGTCTGCCACTAACTGCAGAGCT]

[+] EMBL BF936775             [AAAGTTTTTCAAGTTGATGGTTAAAACATGGAGTGAAGATGAAGAATTCACGAAGACTCCTGGCCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGG CTTGTGTATCAAACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTCAGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCATATATACATG CTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTTCCAAGAATAAAGAAG ATATTCAGTCTGTGGCTAACTGGCAGTTTGTTTGTAGCCTTCGCCTATGGTGCGATTTCACTTCAAGATATGCAGATGTACATGCTTTGATAAAGTCACTTATTCATCCACT AAGTCAACTGGTATATGGAACAATCAAGTTAAATAAAGGTCAAACGTTGTTACCGTTGCATTTTCATTGCATTTCTATGCTTCATAACATGCCTGAGTTCCTGTTCTATGTGAAGCAAATTTGTCAGAAGGGAAGCAACGTTAGTGGAAAATAACGATCTCCGTCTGCCACTAACTGCAGAGCT]
[+] EMBL BF936643             [                                                        CTCCTGGCCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGGCCTTGTGTATCAAACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTCAGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCATATATACATGCCTTTTGTCTACCCTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTTCCAAGAATAAAGAAGAATATTCAGTCTGTGGCTAACTGGCAGTTTGTTTGTAGCCTTCGCCTATGGTGCGATTTCACTTCAAGATATGCAGATGTACATGCTTTGATAAAGTCACTTATTCATCCACTAAAGTCAACTGGTATATGGAACAATCA                                                                                                                                                              ]




>consensus_8392#0
AAAGTTTTTCAAGTTGATGGTTAAAACATGGAGTGAAGATGAAGAATTCACGAAGACTCC
TGGCCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGGCTTGTGTA
TCAAACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTG
CTCAGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATG
CATATATACATGCTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATA
TTTCCAAGAATAAAGAAGATATTCAGTCTGTGGCTAACTGGCAGTTTGTTTGTAGCCTTC
GCCTATGGTGCGATTTCACTTCAAGATATGCAGATGTACATGCTTTGATAAAGTCACTTA
TTCATCCACTAAGTCAACTGGTATATGGAACAATCAAGTTAAATAAAGGTCAAACGTTGT
TACCGTTGCATTTTCATTGCATTTCTATGCTTCATAACATGCCTGAGTTCCTGTTCTATG
TGAAGCAAATTTGTCAGAAGGGAAGCAACGTTAGTGGAAAATAACGATCTCCGTCTGCCA
CTAACTGCAGAGCT

consensusID : consensus_8392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 460
fasta sequence

                              [CATTGTTAAAAAATCCGATCCTAGACCTCAGACTTATTAATAACAAAATACCGAAGATTTTAAGGCATGAAAAACTGGAGAAGAAGTTTTTCAAGGTCTGTCTAATATTTTTTGTGAATGAAGTCTCTAGTTGATGGTTAAAACATGGAGTGAAGATGAAGATTCACGAAGACTCCTGGCCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGGCTTGTGTATCAAACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTCAGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCATATATACATGCTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTTCC-AAGAATAAAGTAAGTTTGTTAGTCGGTGATTTAGATTGT]

[+] EMBL CD140622             [CATTGTTAAAAAATCCGATCCTAGACCTCAGACTTATTAATAACAAAATACCGAAGATTTTAAGGCATGAAAAACTGGAGAAGAAGTTTTTCAAGGTCTGTCTAATATTTTTTGTGAATGAAGTCTCTAGTTGATGGTTAAAACATGGAGTGAAGATGAAGATCCACGAAGACTCCTGGCCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGGCTTGTGTATCAAACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTCAGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCATATATACATGCTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTTCC AAGAATAAAGTAAGTTTGTTAGTCGGTGATTTAGATTG ]
[+] EMBL CD140585             [CATTGTTAAAAAATCCGATCCTAGACCTCAGACTTATTAATAACAAAATACCGAAGATTTTAAGGCATGAAAAACTGGAGAAGAAGTTTTTCAAGGTCTGTCTAATATTTTTTGTGAATGAAGTCTCTAGTTGATGGTTAAAACATGGAGTGAAGATGAAGATTCACGAAGACTCCTGGCCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGGCTTGTGTATCAAACTTATGCTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTCAGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCATATATACATGCTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTTCCGAGGAATAAAGTAAGTTTGTTAGTCGGTGA          ]
[+] EMBL CD140596             [CATTGTTAAAAAATCCGATCCTAGACCTCAGACTTATTAATAACAAAATACCGAAGATTTTAAGGCATGAAAAACTGGAGAAGAAGTTTTTCAAGGTCTGTCTAATATTTTTTGTGAATGAAGTCTCTAGTTGATGGTTAAAACATGGAGTGAAGATGAAGATTCACGAAGACTCCTGGCCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCCGGCTTGTGTATCAAACTTATGTTTGTCGCCTTTGTTAGAAATTGTGAATTCGTCTTGGCGTCGAACATTGCTCAGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCATATATACATGCTTTTGTCTACACTCGACAACTTGCGATAACCCTAAG                                                        ]
[-] EMBL CD140538             [                            CAGACTTATTAATAACAAAATACCGAAGATTTTAAGGCATGAAAAACTGGAGAAGAAGTTTTTCAAGGTCTGTCTAATATTTTTTGTGAATGAAGTCTCTAGTTGATGGTTAAAACATGGAGTGAAGATGAAGATTCACGAAGACTCCTGGCCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGGCTTGTGTATCAAACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTCAGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCATATATACATGCTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTTCC AAGAATAAAGTAAGTTTGTTAGTCGGTGATTTAGATTGT]




>consensus_8392#1
CATTGTTAAAAAATCCGATCCTAGACCTCAGACTTATTAATAACAAAATACCGAAGATTT
TAAGGCATGAAAAACTGGAGAAGAAGTTTTTCAAGGTCTGTCTAATATTTTTTGTGAATG
AAGTCTCTAGTTGATGGTTAAAACATGGAGTGAAGATGAAGATTCACGAAGACTCCTGGC
CTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGGCTTGTGTATCAA
ACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTCA
GATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCATA
TATACATGCTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTTC
CAAGAATAAAGTAAGTTTGTTAGTCGGTGATTTAGATTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8392#0      ------------------------------------------------------------
consensus_8392#1      CATTGTTAAAAAATCCGATCCTAGACCTCAGACTTATTAATAACAAAATACCGAAGATTT 60
                                                                                  

consensus_8392#0      ---------------------------------------------------------AAA 3
consensus_8392#1      TAAGGCATGAAAAACTGGAGAAGAAGTTTTTCAAGGTCTGTCTAATATTTTTTGTGAATG 120
                                                                               *  

consensus_8392#0      GTTTTTCAAGTTGATGGTTAAAACATGGAGTGAAGATGAAGAATTCACGAAGACTCCTGG 63
consensus_8392#1      AAGTCTCTAGTTGATGGTTAAAACATGGAGTGAAGATGAAGA-TTCACGAAGACTCCTGG 179
                         * ** ********************************** *****************

consensus_8392#0      CCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGGCTTGTGTATCA 123
consensus_8392#1      CCTTCCTTAACCTCATAAAGGCCCTTTCATTAAAAAGGGAATGCGCTGGCTTGTGTATCA 239
                      ************************************************************

consensus_8392#0      AACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTC 183
consensus_8392#1      AACTTATGTTTGTCGCCTTTGTTAGAAATTGTAAATTCGTCTTGGCGTCGAACATTGCTC 299
                      ************************************************************

consensus_8392#0      AGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCAT 243
consensus_8392#1      AGATCAACTTGATGCGTGAGTGCCTCTTGGAGCTATTCGGTAAGAATTTGGACGATGCAT 359
                      ************************************************************

consensus_8392#0      ATATACATGCTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTT 303
consensus_8392#1      ATATACATGCTTTTGTCTACACTCGACAACTTGCGATAACCCTAAGAAAGGCATATATTT 419
                      ************************************************************

consensus_8392#0      CCAAGAATAAAGAAGATAT-TCAGTCTGTGGCTAACTGGCAGTTTGTTTGTAGCCTTCGC 362
consensus_8392#1      CCAAGAATAAAGTAAGTTTGTTAGTCGGTGATT------TAGATTGT------------- 460
                      ************ *  * * * **** ***  *       ** ****             

consensus_8392#0      CTATGGTGCGATTTCACTTCAAGATATGCAGATGTACATGCTTTGATAAAGTCACTTATT 422
consensus_8392#1      ------------------------------------------------------------
                                                                                  

consensus_8392#0      CATCCACTAAGTCAACTGGTATATGGAACAATCAAGTTAAATAAAGGTCAAACGTTGTTA 482
consensus_8392#1      ------------------------------------------------------------
                                                                                  

consensus_8392#0      CCGTTGCATTTTCATTGCATTTCTATGCTTCATAACATGCCTGAGTTCCTGTTCTATGTG 542
consensus_8392#1      ------------------------------------------------------------
                                                                                  

consensus_8392#0      AAGCAAATTTGTCAGAAGGGAAGCAACGTTAGTGGAAAATAACGATCTCCGTCTGCCACT 602
consensus_8392#1      ------------------------------------------------------------
                                                                                  

consensus_8392#0      AACTGCAGAGCT 614
consensus_8392#1      ------------