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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 755 fasta sequence
[CGAGGCGGCACGAGGCGAACAAATGCTTCTAATGACGTTTATATAATTCAGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTACCGTTCTTCAGCGTGAAATAGATTTTGTTCAAAAACGCATCTTTTTTGCTCCGAATAATGAAAGTTCATGGAATTATTTTTATGGTTTGTTAATGCCCATAGTACATGGGAAAAAGCATATTCATAATTCTCCATGTAAACCGTTAGCTGATCAGAATCTCAATAATAAGCAAAATATTATTTCTGGTCTTCAAATTATGCGGAAATTTGCAGAGGAATTAATTGCATCTGATCAAATAGCTGGTGATTGTTTAGCACCGCTTAGTTTCTTGGTTGAAGTGTATGCTGATTGTTTAGAATCTTATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCAAAGAAATATTTGACCAAGCTGTCAATTTATGTGAACGTTTGGCCCGTGAAGTGGATCGAATTCGATGTAATTATTGGCAATATCGTGCTCGTCAGTTAATGTGTTTTGCTAAAAAAGTCAACCTAATTCCTGAAATCACTATACCATAAACATCTAAACCAGGTTTTACAATTTTACGTCACAAAATAACTTGATAAATGACGTATGTAATATTTATTTCTGCTACTTGTACATGTTTCACGAATCATAAG]
[+] EMBL CD083377 [CGAGGCGGCACGAGGCGAACAAATGCTTCTAATGACGTTTATATAATTCAGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTACCGTTCTTCAGCGTGAAATAGATTTTGTTCAAAAACGCATCTTTTTTGCTCCGAATAATGAAAGTTCATGGAATTATTTTTATGGTTTGTTAATGCCCATAGTACATGGGAAAAAGCATATTCATAATTCTCCATGTAAACCGTTAGCTGATCAGAATCTCAATAATAAGCAAAATATTATTTCTGGTCTTCAAATTATGCGGAAATTTGCAGAGGAATTAATTGCATCTGATCAAATAGCTGGTGATTGTTTAGCACCGCTTAGTTTCTTGGTTGAAGTGTATGCTGATTGTTTAGAATCTTATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGAC ]
[-] EMBL CD076263 [ TAATGAAAGTTCATGGAATTATTTTTATGGTTGCTTAATGCCCATAGTACATGGGAAAAAGCATATTCATAATTCTCCATGTAAACCGTTAGCTGATCAGAATCTCAATAATAAGCAAAATATTATTTCTGGTCTTCAAATTATGCGGAAATTTGCAGAGGAATTAATTGCATCTGATCAAATAGCTGGTGATTGTTTAGCACCGCTTAGTTTCTTGGTTGAAGTGTATGCTGATTGTCTAGAATCTTATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCAAAGAAATATTTGACCAAGCTGTCAATTTATGTGAACGTTTGGCCCGTGAAGTGGATCGAATTCGATGTAATTATTGGCAATATCGTGCTCGTCAGTTAATGTGTTTTGCTAAAAAAGTCAACCTAATTCCTGAAATCACTATACCATAAACATCTAAACCAGGTTTTACAATTTTACGTCACAAAATAACTTGATAAATGACGTATGTAATATTTATTTCTGCTACTTGTACATGTTTCACGAATCATAAG]
[-] EMBL CD148126 [ TGCTGATTGTTTAGAATCTTATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCAAAGAAATATTTGACCAAGCTGTCAATTTATGTGAACGTTTGGCCCGTGAAGTGGATCGAATTCGATGTAATTATTGGCAATATCGTGCTCGTCAGTTAATGTGTTTTGCTAAAAAAGTCAACCTAATTCCTGAAATCACTATACCATAAAC ]
[+] EMBL BG932370 [ gAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCGAAGAAATATTTGACCAAGCTGTCAATTTATGTGAACGTTTGGCCCGT ]
consensusID : consensus_8402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence
[CTCGNAGCCAATATTCGGCACGAGGCGTTGCATGTTATTCTTCTGCAACCTATGAGTACTCGTGAAAAGTATGTATTCTACAAAGATAGACAAGAATGGGATGACGTTAGTCCGATTCCTCAGGATGATGGAGGTCGGAACATTGTAAATATTGCATATTCTGAAGAATTTGTTGATGCACATGACTATTTTCGTGCAGCCTTAATGAAGGACGAGCGTAGTGAGCGGACACTTTCACTAACCTCTGACATTTTATTGTTTAATCCCGCCAACTACACAGCTTGGGAGTACAGAAGACGGATCATCGAGGAAATTTCATCTGACCTAAATGGTGAGCTGCGTTTCGTTGGTGAGCTTATTGAAGACTATTCAAAAAATTACCAGTTATGGCATCATCGACAATGGGTTATCGAGAAAGTATCGCAACAGAATCAAAATGACTCCAGCTTTATAACACATCTTAGTTCAGAGGAATTAGATTTCGTTGGATTTGTCATTTCAGATGATCCTAAAAATTATCATGCATGGCAGCACCGTCGGTGGATCATAACTTTTTTCAAAGTGCCTGTTGAAAAAGAGTTGGCATTCACCGAACAAATGCTTCTAAATGACGTTTATAATAATTCAGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTA]
[+] EMBL CD082668 [CTCGNAGCCAATATTCGGCACGAGGCGTTGCATGTTATTCTTCTGCAACCTATGAGTACTCGTGAAAAGTATGTATTCTACAAAGATAGACAAGAATGGGATGACGTTAGTCCGATTCCTCAGGATGATGGAGGTCGGAACATTGTAAATATTGCATATTCTGAAGAATTTGTTGATGCACATGACTATTTTCGTGCAGCCTTAATGAAGGACGAGCGTAGTGAGCGGACACTTTCACTAACCTCTGACATTTTATTGTTTAATCCCGCCAACTACACAGCTTGGGAGTACAGAAGACGGATCATCGAGGAAATTTCATCTGACCTAAATGGTGAGCTGCGTTTCGTTGGTGAGCTTATTGAAGACTATTCAAAAAATTACCAGTTATGGCATCATCGACAATGGGTTATCGAGAAAGTATCGCAACAGAATCAAAATGACTCCAGCTTTATAACACATCTTAGTTCAGAGGAATTAGATTTCGTTGGATTTGTCATTTCAGATGATCCTAAAAATTATCATGCATGGCAGCACCGTCGGTGGATCATAACTTTTTTCAAAGTGCCTGTTGAAAAAGAGTTGGCATTCACCGAACAAATGCTTCTAAATGACGTTTATAATAATTCAGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTA]
[+] EMBL CD186994 [ GGATGACGTTAGTCCGATTCCTCAGGATGATGGAGGTCGGAACATTGTAAATATTGCATATTCTGAAGAATTTGTTGATGCACATGACTATTTTCGTGCAGCCTTAATGAAGGACGAGCGTAGTGAGCGGACACTTTCACTAACCTCTGACATTTTATTGTTTAATCCCGCCAACTACACAGCTTGGGAGTACAGAAGACGGATCATCGAGGAAATTTCATCTGACCTAAATGGTGAGCTGCGTTTCGTTGGTGAGCTTATTGAAGACTATTCAAAAAATTACCAGTTATGGCATCATCGACAATGGGTTATCGAGAAAGTATCGCAACAGAATCAAAATGACTCCAGCTTTATAACACATCTTAGTTCAGAGGAATTAGATTTCGTTGGATTTGTCATTTCAGATGATCCTAAAAATTATCATGCATGGCAGCACCGTCGGTGGATCATAACTTTTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8402#0 ----------CGAGGCGGCACGAGGCGA-ACAAATGCTTCTAATGACGTTTATATAATTC 49
consensus_8402#1 CTCGNAGCCAATATTCGGCACGAGGCGTTGCATGTTATTCTTCTGCAACCTATG-AGTAC 59
* ************ ** * **** ** *** * * *
consensus_8402#0 AGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTACC--GTT 107
consensus_8402#1 TCGTGAAAAGTAT--GTATTCTACAAAGATAGACAAGAATGGGATGACGTTAGTCCGATT 117
* ** ** ** * ** ** * * ** * *** * **
consensus_8402#0 CTTCAGCGTGAAATAGATTTTGTTCAAAAACGCATCTTTTTTGCTCCGAATAAT--GAAA 165
consensus_8402#1 CCTCAGGATGA--TGGAGGTCGGAACATTGTAAATATTGCATATTCTGAAGAATTTGTTG 175
* **** *** * ** * * * ** ** * ** *** *** *
consensus_8402#0 GTTCATGGAATTATTTTTATGGTTTGTTAATGCCCATAGTACATGG-GAAAAAGCATATT 224
consensus_8402#1 ATGCACATGACTATTTTCGTGCAGCCTTAATGAAGGACGAGCGTAGTGAGCGGACACTTT 235
* ** * ****** ** ****** * * * * ** ** **
consensus_8402#0 CATAATTCTCCATGTAAACCGTTAGCTGATCAGAATCTCAATAATAAGCAAAATATTATT 284
consensus_8402#1 CACTAACCTCT-----GACATTTTATTGTTTA--ATCCCGCCAACTA-CA------CAGC 281
** * *** ** ** ** * * *** * ** * ** *
consensus_8402#0 TCTGGTCTTCAAATTATGCGGAAATTTGCAGAGGAATTAATTGCATCTGATCAAATAGCT 344
consensus_8402#1 TTGGGAGTACAGA--AGACGGA---TCATCGAGGAA---ATTTCATCTGACC---TAAAT 330
* ** * ** * * **** * ****** *** ******* * ** *
consensus_8402#0 GGTGATTGTTTAGCACCGCTTAGTTTCTTGGTTGAAGTGTATGCTGATTGTTTAGAATCT 404
consensus_8402#1 GGTGA--GCTGCGTTTCG-TTGGTGAGCTTATTGAAGACTATTCAAAAAATTACCAGTTA 387
***** * * * ** ** ** * ****** *** * * ** * *
consensus_8402#0 TATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGT 464
consensus_8402#1 TGGCATCATCGACAATGGGTTATCGAGAAAGTATCGCAACAGAATCAAAATGACTCCAGC 447
* * * * ** * ** * * * * ** * ** **** *
consensus_8402#0 TTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCAAAGAAATATTTGACCAAGCT 524
consensus_8402#1 -------TTTATAACAC-----ATCTTAGTTCAGAG---GAATTAGATTTCGTTGGATTT 492
** ** ** * ** ***** ** ** * ** * * *
consensus_8402#0 GTCAATTTATGTGAACGTTTGGCCCGTGAAGTGGATCGAATTCGATGTAATTATTGGCAA 584
consensus_8402#1 GTCATTTCAGATGA---------TCCTAAAAATTATCATGCATGGCAGCACCGTCGGTGG 543
**** ** * *** * * ** *** * * * **
consensus_8402#0 TATCGTGCTCGTCAGTTAATGTGTTTTGCTAAAAAAGTCAACCTAATTCCTGAAATCACT 644
consensus_8402#1 -ATCATAA-CTTTTTTCAAAGTGCCT-GTTGAAAAAG-------AGTTG--GCATTCACC 591
*** * * * * ** *** * * * ****** * ** * * ****
consensus_8402#0 ATACCATAAACATCTAAACCAGGTTTTACAATTTTACGTCACAAAATAAC--TTGATAAA 702
consensus_8402#1 GAAC-AAATGCTTCTAAATGACGTTT-ATAATAATTCAGCTTGGAATCATCGTTACTATA 649
** * * * ****** * **** * *** * * * *** * ** ** *
consensus_8402#0 TGACGTATGTAATATTTATTTCTGCTACTTGTACATGTTTCACGAATCATAAG 755
consensus_8402#1 TTGTA-ATGTGTGACGAAGGTTTATCGTCTA---------------------- 679
* **** * * * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||