cluster # 8411

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8411 cluster # 8411 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8411#0 length = 1812 sequences # 5

consensus_8411#1 length = 245 sequences # 1

consensusID : consensus_8411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1812
fasta sequence

                              [TTTGGTCGAGATGACTCTTTGTTTGAATTTATGCTGAATTGAGTAGTTTTATTTGTGCTTACCGTAGAACATATTTTAACATTCAACTTTTAGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTAACCCGCATGCACAATTACATTATGGATTGTGTTCTGGAAAAACCAGAGTGTTCTGGTCCTGCTGCATCATGTGTCACCACTAACACTATTTCAACTTCGCGTTCTGAAAATGTTGCTATCAGTTCCACTACTCAGGGTGACTCGAGTAGCAATATACCACAATTGCAGAAGGGATCTGCTTGGTCTCATAGCTTAGAACTCTCAGGCAGTCGTTTACCATGGGGTCGACATAAACAGGTCAAGATCTTAGTCCCGAACTGCACTGCGGGTCTTGTAATTGGGAAGTTAGGTAGTTATGTCCGAGAAATAAAAGACAGAACGGGGGCCTTTATACAGATTTCACAGAAGTCTGTTGAAATAAATTTATTGGAGCGCTGTATAACTATTGCAGGTGAACCAGAGCAGTGTCGTGCGGCTGTAGATTTAGTTTTAGCCAAAATAGCGGAGGATCCCCAATCAGCCATCTACCCCGCCATTTCTTACTCACATGTACGTGGTCCTGTAGCGAGCGCTTATCCAACTGGGTCTCCTTTTGCAATAATGCCATCTGTTCGATTCGATACAAGCCAAGGTTCACATTTACGCTTGCCTCCTGGCCGTGGTGCTTCTTGTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTTTCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGCGTTACTTCAGGTCCAAGCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTAGATATGGCTCCAACTAATATGTCCACCTTGTTTACTCATGGACTATCTACAAATATTGGGTATGTATCACCTGAAGATGCTACTGTTCTACAGCCAGCTTTGCCAGAGTATGGGCAAGGATTCTGTTCAGCTACACCTACTGGTAATGTTTCTCTATTAGGTAGTGGAGGGGGTGCAAGTGGAGGCAGTTCTAATACCGGTGGAGGGAGTGGCGGACACGGAAGCACTATATTGCACGAAAGTATTTGGCCCATTGGTGAATCCCAAATTCAGACACCCACATGTTTTGATGCAGCTTATCCAGGACCTTTAAATTTCGCTATTTATCCAACGAATCAATCACTTCTAACTGCAATGGCTTCTAGACACCCCAGTGAGTCATATCAATCTCATCCAGATATATTCGCACCATCTAGTCCATACATGACCGGTATATCTCAGCCATCATTCACGATTCCGTATAGTACTTCACCATCATTAATGGGTGGGTATGGTGGGAATCTTGTTGGTGTTCCTNAAATAGACCCCAGNA-GTCCTCAGCTTGCTACACTTTACCCTGGCATTTCTCCTTCCTTGTGTTTGTCTCAACCTTTTCCTGTTAGTGTTAGTTCGGAAATGGATGTAAAAGTTGCACCGATCAGACAACAACCACCAACTTTAAATGAATTATTGGGATCATTGCGTTTGGGTTGTAAAACTGAAGATGTGGTATCTGAAATAAACCAAACATTCTCAACTCTTACACGCCATGGATTTCTGAATATGGCTGGGTCAGGACCATTTCCCTTGATGTCACCTGCAGGTTCTCAGCCAGCTAGTTATATAGCACCTCTTCTTGCTACGCATTTACCGTCACCAACTGCAGAAAGCAGATCAAGTATAATTTTACCAG]

[+] EMBL CD112176             [TTTGGTCGAGATGACTCTTTGTTTGAATTTATGCTGAATTGAGTAGTTTTATTTGTGCTTACCGTAGAACATATTTTAACATTCAACTTTTAGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTAACCCGCATGCACAATTACATTATGGATTGTGTTCTGGAAAAACCAGAGTGTTCTGGTCCTGCTGCATCATGTGTCACCACTAACACTATTTCAACTTCGCGTTCTGAAAATGTTGCTATCAGTTCCACTACTCAGGGTGACTCGAGTAGCAATATACCACAATTGCAGAAGGGATCTGCTTGGTCTCATAGCTTAGAACTCTCAGGCAGTCGTTTACCATGGGGTCGACATAAACAGGTCAAGATCTTAGTCCCGAACTGCACTGCGGGTCTTGTAATTGGGAAGTTAGGTAGTTATGTCCGAGAAATAAAAGACAGAACGGGGGCCTTTATACAGATTTCACAGAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD154477             [                                                                                                                                                                                                                                                                                                                                                                                            AAGATCTTAGTCCCGAACTGCACTGCGGGTCTTGTAATTGGGAAGTTAGGTAGTTATGTCCGAGAAATAAAAGACAGAACGGGGGCCTTTATACAGATTTCACAGAAGTCTGTTGAAATAAATTTATTGGAGCGCTGTATAACTATTGCAGGTGAACCAGAGCAGTGTCGTGCGGCTGTAGATTTAGTTTTAGCCAAAATAGCGGAGGATCCCCAATCAGCCATCTACCCCGCCATTTCTTACTCACATGTACGTGGTCCTGTAGCGAGCGCTTATCCAACTGGGTCTCCTTTTGCAATAATGCCATCTGTTCGATTCGATACAAGCCAAGGTTCACATTTACGCTTGCCTCCTGGCCGTGGTGCTTCTTGTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTTTCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGTGTTACTTCAGGTCCAAGCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTAGATATGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD091393             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TACGCTTGCCTCCTGGCCGTGGTGCTTCTTGTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTTTCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGCGTTACTTCAGGTCCAAGCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTAGATATGGCTCCAACTAATATGTCCACCTTGTTTACTCATGGACTATCTACAAATATTGGGTATGTATCACCTGAAGATGCTACTGTTCTACAGCCAGCTTTGCCAGAGTATGGGCAAGGATTCTGTTCAGCTACACCTACTGGTAATGTTTCTCTATTAGGTAGTGGAGGGGGTGCAAGTGGAGGCAGTTCTAATACCGGTGGAGGGAGTGGCGGACACGGAAGCACTATATTGCACGAAAGTATTTGGCCCATTGGTGAATCCCAAATTCAGACACCCACATGTTTTGATGCAGCTTATCCAGGACCTTTAAATTTCGCTATTTATCCAACGAATCAATCACTTCTAACTGCAATGGCTTCTAGACACCCCAGTGAGTCATATCAATCTCATCCAGATATATTCGCACCATCTAGTCCATACATGACCGGTATATCTCAGCCATCATTCACGATTCCGTATAGTACTTCACCATCATTAATGGGTGGGTATGGTGGGAATCTTGTTGGTGTTCCTNAAATAGACCCCAGNA GTCCTCAGCTTGCTACACTTTACCCTGGCA                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD184205             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTTTCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGCGTTACTTCAGGTCCAAGCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTAGATATGGCTCCAACTAATATGTCCACCTTGTTTACTCATGGACTATCTACAAATATTGGGTATGTATCACCTGAAGATGCTACTGTTCCACAGCCAGCTTTGCCAGAGTATGGGCAAGGATTCTGTTCAGCTACACCTACTGGTAATGTTTCTCTATTAGGTAGCGGAGGGGGTGCAAGTGGAGGCAGTTCTAATACCGGTGGAGGGAGTGGCGGACACGGAAGCACTATATTGCACGAAAGTATTTGGCCCATTGGTGAATCCCAAATTCAGACACCCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD166284             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCATCATTCACGATTCCGTATAGTACTTCACCATCATTAATGGGTGGTAATGGTGGGTATCTTGTTGGTGTTCCTCAAATAGA CCCAGGAGGTCCTCAGCTTGCTACACTTTACCCTGGCATTTCTCCTTCCTTGTGTTTGTCTCAACCTTTTCCTGTTAGTGTTAGTTCGGAAATGGATGTAAAAGTTGCACCGATCAGACAACAACCACCAACTTTAAATGAATTATTGGGATCATTGCGTTTGGGTTGTAAAACTGAAGATGTGGTATCTGAAATAAACCAAACATTCTCAACTCTTACACGCCATGGATTTCTGAATATGGCTGGGTCAGGACCATTTCCCTTGATGTCACCTGCAGGTTCTCAGCCAGCTAGTTATATAGCACCTCTTCTTGCTACGCATTTACCGTCACCAACTGCAGAAAGCAGATCAAGTATAATTTTACCAG]




>consensus_8411#0
TTTGGTCGAGATGACTCTTTGTTTGAATTTATGCTGAATTGAGTAGTTTTATTTGTGCTT
ACCGTAGAACATATTTTAACATTCAACTTTTAGGGACTGAAGAAAGAGTTTGTCTCATTC
AAGGGACCTTAGAGGGTGTAACCCGCATGCACAATTACATTATGGATTGTGTTCTGGAAA
AACCAGAGTGTTCTGGTCCTGCTGCATCATGTGTCACCACTAACACTATTTCAACTTCGC
GTTCTGAAAATGTTGCTATCAGTTCCACTACTCAGGGTGACTCGAGTAGCAATATACCAC
AATTGCAGAAGGGATCTGCTTGGTCTCATAGCTTAGAACTCTCAGGCAGTCGTTTACCAT
GGGGTCGACATAAACAGGTCAAGATCTTAGTCCCGAACTGCACTGCGGGTCTTGTAATTG
GGAAGTTAGGTAGTTATGTCCGAGAAATAAAAGACAGAACGGGGGCCTTTATACAGATTT
CACAGAAGTCTGTTGAAATAAATTTATTGGAGCGCTGTATAACTATTGCAGGTGAACCAG
AGCAGTGTCGTGCGGCTGTAGATTTAGTTTTAGCCAAAATAGCGGAGGATCCCCAATCAG
CCATCTACCCCGCCATTTCTTACTCACATGTACGTGGTCCTGTAGCGAGCGCTTATCCAA
CTGGGTCTCCTTTTGCAATAATGCCATCTGTTCGATTCGATACAAGCCAAGGTTCACATT
TACGCTTGCCTCCTGGCCGTGGTGCTTCTTGTGGTAACATCGAAGGATGGGATGATAATG
TGCCAAGTGGTGTTGGTTTTTCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATG
CTGCGTTACTTCAGGTCCAAGCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACT
ACCCCACTCTGCCATCTGTAGATATGGCTCCAACTAATATGTCCACCTTGTTTACTCATG
GACTATCTACAAATATTGGGTATGTATCACCTGAAGATGCTACTGTTCTACAGCCAGCTT
TGCCAGAGTATGGGCAAGGATTCTGTTCAGCTACACCTACTGGTAATGTTTCTCTATTAG
GTAGTGGAGGGGGTGCAAGTGGAGGCAGTTCTAATACCGGTGGAGGGAGTGGCGGACACG
GAAGCACTATATTGCACGAAAGTATTTGGCCCATTGGTGAATCCCAAATTCAGACACCCA
CATGTTTTGATGCAGCTTATCCAGGACCTTTAAATTTCGCTATTTATCCAACGAATCAAT
CACTTCTAACTGCAATGGCTTCTAGACACCCCAGTGAGTCATATCAATCTCATCCAGATA
TATTCGCACCATCTAGTCCATACATGACCGGTATATCTCAGCCATCATTCACGATTCCGT
ATAGTACTTCACCATCATTAATGGGTGGGTATGGTGGGAATCTTGTTGGTGTTCCTNAAA
TAGACCCCAGNAGTCCTCAGCTTGCTACACTTTACCCTGGCATTTCTCCTTCCTTGTGTT
TGTCTCAACCTTTTCCTGTTAGTGTTAGTTCGGAAATGGATGTAAAAGTTGCACCGATCA
GACAACAACCACCAACTTTAAATGAATTATTGGGATCATTGCGTTTGGGTTGTAAAACTG
AAGATGTGGTATCTGAAATAAACCAAACATTCTCAACTCTTACACGCCATGGATTTCTGA
ATATGGCTGGGTCAGGACCATTTCCCTTGATGTCACCTGCAGGTTCTCAGCCAGCTAGTT
ATATAGCACCTCTTCTTGCTACGCATTTACCGTCACCAACTGCAGAAAGCAGATCAAGTA
TAATTTTACCAG

consensusID : consensus_8411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [ATCCACTTAAAAATTTTGGTACCATCGCTAGCAGTCGGCGCTATTATTGGCAAAGGAGGAGAGTCCATTGCCAAGATCCAGAAGGAAACTGGCGCAAGGATTAAGTTATCGAAAGTAAATGATTTGTATCCCGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTAACCCGCATGCACTATTACATTATGGATTGTGTTCTGGAAAACCAGAGTGTTCTGGTCCTGCTGCT]

[-] EMBL CD068331             [ATCCACTTAAAAATTTTGGTACCATCGCTAGCAGTCGGCGCTATTATTGGCAAAGGAGGAGAGTCCATTGCCAAGATCCAGAAGGAAACTGGCGCAAGGATTAAGTTATCGAAAGTAAATGATTTGTATCCCGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTAACCCGCATGCACTATTACATTATGGATTGTGTTCTGGAAAACCAGAGTGTTCTGGTCCTGCTGCT]




>consensus_8411#1
ATCCACTTAAAAATTTTGGTACCATCGCTAGCAGTCGGCGCTATTATTGGCAAAGGAGGA
GAGTCCATTGCCAAGATCCAGAAGGAAACTGGCGCAAGGATTAAGTTATCGAAAGTAAAT
GATTTGTATCCCGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTA
ACCCGCATGCACTATTACATTATGGATTGTGTTCTGGAAAACCAGAGTGTTCTGGTCCTG
CTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8411#0      -----------------------------TTTGGTCGAGATGACTCTTTGTTT------- 24
consensus_8411#1      ATCCACTTAAAAATTTTGGTACCATCGCTAGCAGTCGGCGCTATTATTGGCAAAGGAGGA 60
                                                       ****     * * ** *          

consensus_8411#0      GAATTTAT-GCTGAATTGAGTAGTTTTATTTGTGCTTACCGTAGAACAT---ATTTTAAC 80
consensus_8411#1      GAGTCCATTGCCAAGATCCAGAAGGAAACTGGCGCAAGGATTAAGTTATCGAAAGTAAAT 120
                      ** *  ** **  *  *    *     * * * **      **    **   *  * ** 

consensus_8411#0      ATTCAACTTTTAGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTA 140
consensus_8411#1      GATTTGTATCCCGGGACTGAAGAAAGAGTTTGTCTCATTCAAGGGACCTTAGAGGGTGTA 180
                        *     *   ************************************************

consensus_8411#0      ACCCGCATGCACAATTACATTATGGATTGTGTTCTGGAAAAACCAGAGTGTTCTGGTCCT 200
consensus_8411#1      ACCCGCATGCACTATTACATTATGGATTGTGTTCTGGAAAA-CCAGAGTGTTCTGGTCCT 239
                      ************ **************************** ******************

consensus_8411#0      GCTGCATCATGTGTCACCACTAACACTATTTCAACTTCGCGTTCTGAAAATGTTGCTATC 260
consensus_8411#1      GCTGCT------------------------------------------------------ 245
                      *****                                                       

consensus_8411#0      AGTTCCACTACTCAGGGTGACTCGAGTAGCAATATACCACAATTGCAGAAGGGATCTGCT 320
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      TGGTCTCATAGCTTAGAACTCTCAGGCAGTCGTTTACCATGGGGTCGACATAAACAGGTC 380
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      AAGATCTTAGTCCCGAACTGCACTGCGGGTCTTGTAATTGGGAAGTTAGGTAGTTATGTC 440
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      CGAGAAATAAAAGACAGAACGGGGGCCTTTATACAGATTTCACAGAAGTCTGTTGAAATA 500
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      AATTTATTGGAGCGCTGTATAACTATTGCAGGTGAACCAGAGCAGTGTCGTGCGGCTGTA 560
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      GATTTAGTTTTAGCCAAAATAGCGGAGGATCCCCAATCAGCCATCTACCCCGCCATTTCT 620
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      TACTCACATGTACGTGGTCCTGTAGCGAGCGCTTATCCAACTGGGTCTCCTTTTGCAATA 680
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      ATGCCATCTGTTCGATTCGATACAAGCCAAGGTTCACATTTACGCTTGCCTCCTGGCCGT 740
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      GGTGCTTCTTGTGGTAACATCGAAGGATGGGATGATAATGTGCCAAGTGGTGTTGGTTTT 800
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      TCAGCCGTTGCTAATCCTTTTGGATCGTCTCTTTTCCATGCTGCGTTACTTCAGGTCCAA 860
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      GCAGCGGCTCTGGCGGCAAATTTAAATACCACCGGTTACTACCCCACTCTGCCATCTGTA 920
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      GATATGGCTCCAACTAATATGTCCACCTTGTTTACTCATGGACTATCTACAAATATTGGG 980
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      TATGTATCACCTGAAGATGCTACTGTTCTACAGCCAGCTTTGCCAGAGTATGGGCAAGGA 1040
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      TTCTGTTCAGCTACACCTACTGGTAATGTTTCTCTATTAGGTAGTGGAGGGGGTGCAAGT 1100
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      GGAGGCAGTTCTAATACCGGTGGAGGGAGTGGCGGACACGGAAGCACTATATTGCACGAA 1160
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      AGTATTTGGCCCATTGGTGAATCCCAAATTCAGACACCCACATGTTTTGATGCAGCTTAT 1220
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      CCAGGACCTTTAAATTTCGCTATTTATCCAACGAATCAATCACTTCTAACTGCAATGGCT 1280
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      TCTAGACACCCCAGTGAGTCATATCAATCTCATCCAGATATATTCGCACCATCTAGTCCA 1340
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      TACATGACCGGTATATCTCAGCCATCATTCACGATTCCGTATAGTACTTCACCATCATTA 1400
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      ATGGGTGGGTATGGTGGGAATCTTGTTGGTGTTCCTNAAATAGACCCCAGNAGTCCTCAG 1460
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      CTTGCTACACTTTACCCTGGCATTTCTCCTTCCTTGTGTTTGTCTCAACCTTTTCCTGTT 1520
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      AGTGTTAGTTCGGAAATGGATGTAAAAGTTGCACCGATCAGACAACAACCACCAACTTTA 1580
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      AATGAATTATTGGGATCATTGCGTTTGGGTTGTAAAACTGAAGATGTGGTATCTGAAATA 1640
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      AACCAAACATTCTCAACTCTTACACGCCATGGATTTCTGAATATGGCTGGGTCAGGACCA 1700
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      TTTCCCTTGATGTCACCTGCAGGTTCTCAGCCAGCTAGTTATATAGCACCTCTTCTTGCT 1760
consensus_8411#1      ------------------------------------------------------------
                                                                                  

consensus_8411#0      ACGCATTTACCGTCACCAACTGCAGAAAGCAGATCAAGTATAATTTTACCAG 1812
consensus_8411#1      ----------------------------------------------------