cluster # 842

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Schistosoma mansoni
cluster # 842 cluster # 842 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_842#0 length = 580 sequences # 1

consensus_842#1 length = 441 sequences # 1

consensusID : consensus_842#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [CGTATCTCAAAAATGATTCACAGAATACAGAAACCTATATCAACTCTCAAAATTATAAAACAGTGTCAATGGAAGAAACAGTCAATTGCTCAGATCTTTTATTAAATATTTCAGTTATTCAAGTAAAATCTCCCTATATCGGCTTTCTACGTTGTTTATCAACACTTCTTGGAAGACATGTTCCATATATATCCGTTCACAACCAACTGATGGTAGATCTCTGTGATATGGAATACGAAGGAGTACCACAGAATTGTCCTGATGATCCTATACCTAAAGAAATTTTGGAAAAGATTCTAAGCTTTGGTCTAGTTATTACAAACCAGTGTCGAACTGTTCATGATGATCTGGAAACGTCTCAAGTTTTAGATGCGTCTGAACCAGGAAATTTCCTGATATCAGATAAACTTCAGGATATTTTTACAAGTCTTGAAAATAATGGTCAACCATCAACACTCAAGAATTTATTACATAATATGGATTTTCAAAATTTATTGATCAGTTCACTAGCACATTTCAAAGGAATAGCACAGTTTTCAGAGCCATGGATAACAGCATTACAAACTTACTTTAATGATTC]

[+] EMBL AI974959             [CGTATCTCAAAAATGATTCACAGAATACAGAAACCTATATCAACTCTCAAAATTATAAAACAGTGTCAATGGAAGAAACAGTCAATTGCTCAGATCTTTTATTAAATATTTCAGTTATTCAAGTAAAATCTCCCTATATCGGCTTTCTACGTTGTTTATCAACACTTCTTGGAAGACATGTTCCATATATATCCGTTCACAACCAACTGATGGTAGATCTCTGTGATATGGAATACGAAGGAGTACCACAGAATTGTCCTGATGATCCTATACCTAAAGAAATTTTGGAAAAGATTCTAAGCTTTGGTCTAGTTATTACAAACCAGTGTCGAACTGTTCATGATGATCTGGAAACGTCTCAAGTTTTAGATGCGTCTGAACCAGGAAATTTCCTGATATCAGATAAACTTCAGGATATTTTTACAAGTCTTGAAAATAATGGTCAACCATCAACACTCAAGAATTTATTACATAATATGGATTTTCAAAATTTATTGATCAGTTCACTAGCACATTTCAAAGGAATAGCACAGTTTTCAGAGCCATGGATAACAGCATTACAAACTTACTTTAATGATTC]




>consensus_842#0
CGTATCTCAAAAATGATTCACAGAATACAGAAACCTATATCAACTCTCAAAATTATAAAA
CAGTGTCAATGGAAGAAACAGTCAATTGCTCAGATCTTTTATTAAATATTTCAGTTATTC
AAGTAAAATCTCCCTATATCGGCTTTCTACGTTGTTTATCAACACTTCTTGGAAGACATG
TTCCATATATATCCGTTCACAACCAACTGATGGTAGATCTCTGTGATATGGAATACGAAG
GAGTACCACAGAATTGTCCTGATGATCCTATACCTAAAGAAATTTTGGAAAAGATTCTAA
GCTTTGGTCTAGTTATTACAAACCAGTGTCGAACTGTTCATGATGATCTGGAAACGTCTC
AAGTTTTAGATGCGTCTGAACCAGGAAATTTCCTGATATCAGATAAACTTCAGGATATTT
TTACAAGTCTTGAAAATAATGGTCAACCATCAACACTCAAGAATTTATTACATAATATGG
ATTTTCAAAATTTATTGATCAGTTCACTAGCACATTTCAAAGGAATAGCACAGTTTTCAG
AGCCATGGATAACAGCATTACAAACTTACTTTAATGATTC

consensusID : consensus_842#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [AACAGTTCGACACTGGTTTGTAATAACTAGACCAAAGCTTAGAATCTATATTTAAAGAATGAGATTAAAATTTTTTTTGATAAGTCACAGCAACAATTTCATAACTTTTGAAGTCAGTAATAATAATAATATAGAAAGGATCAAATTACTGAAGTTACTGGCTTCGATCTCTTATGTTATCATGGGTGTTCATTATTGAAAATTTTCAGCTGACTTCAGTTGTCAATGTAAGTTATCTTCCAAGAGTGGTTTGAATATCCAAGTACCAGTTCATGTGAGGAAAAGTATTTACTTACGGATTAGATGCTTTCTTCATGTACAATAGACCTTAAGTGAAGAGTTNACATANNACTACTCTANTACACTATACATATTATTCTATCAGAAAATTGTGAACATTACTATTNTACTCATTANACAGGGNGATATCAGTTTTCTATN]

[+] EMBL CD139671             [AACAGTTCGACACTGGTTTGTAATAACTAGACCAAAGCTTAGAATCTATATTTAAAGAATGAGATTAAAATTTTTTTTGATAAGTCACAGCAACAATTTCATAACTTTTGAAGTCAGTAATAATAATAATATAGAAAGGATCAAATTACTGAAGTTACTGGCTTCGATCTCTTATGTTATCATGGGTGTTCATTATTGAAAATTTTCAGCTGACTTCAGTTGTCAATGTAAGTTATCTTCCAAGAGTGGTTTGAATATCCAAGTACCAGTTCATGTGAGGAAAAGTATTTACTTACGGATTAGATGCTTTCTTCATGTACAATAGACCTTAAGTGAAGAGTTNACATANNACTACTCTANTACACTATACATATTATTCTATCAGAAAATTGTGAACATTACTATTNTACTCATTANACAGGGNGATATCAGTTTTCTATN]




>consensus_842#1
AACAGTTCGACACTGGTTTGTAATAACTAGACCAAAGCTTAGAATCTATATTTAAAGAAT
GAGATTAAAATTTTTTTTGATAAGTCACAGCAACAATTTCATAACTTTTGAAGTCAGTAA
TAATAATAATATAGAAAGGATCAAATTACTGAAGTTACTGGCTTCGATCTCTTATGTTAT
CATGGGTGTTCATTATTGAAAATTTTCAGCTGACTTCAGTTGTCAATGTAAGTTATCTTC
CAAGAGTGGTTTGAATATCCAAGTACCAGTTCATGTGAGGAAAAGTATTTACTTACGGAT
TAGATGCTTTCTTCATGTACAATAGACCTTAAGTGAAGAGTTNACATANNACTACTCTAN
TACACTATACATATTATTCTATCAGAAAATTGTGAACATTACTATTNTACTCATTANACA
GGGNGATATCAGTTTTCTATN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_842#0      CGTATCTCAAAAATGATTCACAGAATACAGAAACCTATATCAACTCTCAAAATTATAAAA 60
consensus_842#1      ----------------------------------------------------------AA 2
                                                                               **

consensus_842#0      CAGTGTCAATGGAAGAAACAGTCAATTGCTCAGATCTTTTATTAAATATTTCAGTTATTC 120
consensus_842#1      CAGTTCGACACTGGTTTGTAATAACTAGACCAAAGCTTAGAATCTATATTTAAAGAATGA 62
                     ****   *           * * * * *  ** * ***  * *  ****** *   **  

consensus_842#0      AAGTAAAATCTCCCTATATCGGCTTTCTACGTTGTTTATCAACACTTCTTGGAAGACATG 180
consensus_842#1      GATTAAAATTTTTTTTGATAAG-TCACAGCAACAATT-TCATAACTTTT--GAAGTCAGT 118
                      * ****** *   *  **  * *  *  *     ** ***  **** *  **** **  

consensus_842#0      TTCCATATATATCCGTTCACAACCAACTGATGGTAGATCTCTGTGATATGGAATACGAAG 240
consensus_842#1      AATAATAATAATATAGAAAGGATCAAATTACTGAAGTTAC---TGGCTTCGATCTCTTAT 175
                         ***   **      *  * *** * *  * ** *     **   * **   *  * 

consensus_842#0      GAGTACCACAGAATTGTCCTGATGATCCTATACCTAAAGA-AATTTTGGAAAAGATTCTA 299
consensus_842#1      GT-TATCATGG----GTGTTCATTATTGAAAATTTTCAGCTGACTTCAGTTGTCAATGTA 230
                     *  ** **  *    **  * ** **   * *  *  **   * **  *     * * **

consensus_842#0      AGCTTTGGTCTAGTTATTACAAACCAGTGTCGAACTGTTCATGATGATCTGGAAACGTCT 359
consensus_842#1      AGTTATCTTCCAAGAGTGGT--TTGAATATCCAA--GTACCAGTTCATGTGAGGAA---- 282
                     ** * *  ** *    *        * * ** **  ** *  * * ** **   *     

consensus_842#0      CAAGTTTTAGATGCGTCTGAACCAGGAAATTTCCTGATATCAGATAAACTTCAGGATATT 419
consensus_842#1      -AAGTATT---TACTTACGGATTAGATGCTTTCTTCATGTACAATAGACCTTAAG----- 333
                      **** **   * * *  * *  **    **** * ** *   *** ** * * *     

consensus_842#0      TTTACAAGTCTTGAAAATAATGGTCAACCATCAACACTCAAGAATTTATTACATAATATG 479
consensus_842#1      -TGAAGAGTTNACATANNACTACTCTANTA----CACTATACATATTATTCTATCAGA-A 387
                      * *  ***    * *  * *  ** *  *    ****  * *  *****  ** * *  

consensus_842#0      GATTTTCAAAATTTATTGATCAGTTCACTAGCACATTTCAAAGGAATAGCACAGTTTTCA 539
consensus_842#1      AATTGTGAACATT-----ACTATTNTACT----CATTANACAGGGNGATATCAGTTTTCT 438
                      *** * ** ***     *  * *  ***    ****  * ***   *   ******** 

consensus_842#0      GAGCCATGGATAACAGCATTACAAACTTACTTTAATGATTC 580
consensus_842#1      ATN-------------------------------------- 441