These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 643 fasta sequence [TCTTGTGATTTGTTGCATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTGCTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAA-GGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGATGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCATTCAGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATT] [-] EMBL CD098346 [TCTTGTGATTTGTTGCATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCCGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTGCTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTG ] [+] EMBL CD080566 [ TGATTTGTTGCATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTACTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGATGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCATTCAGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATT] [+] EMBL CD140225 [ ATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACTAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTACTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAA GGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGC ] [+] EMBL CD078507 [ TGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCGTTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGAATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTTCGACGGAGGCTTGCTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAA GGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCANAAGAAGACCATGTCANATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAAC ] consensusID : consensus_8431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [CTCGAGGCAAGAATCGGCACGAGGTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCACTCAGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATTGGGGCAATTCAAAGACAACAAGCTGCACGTGCTGTTGAAACTGATCGTAATATTGCTGAGACTTTTGAAGATTTGAGTCAACTTATGAACAACGCAAGTGAAATG] [+] EMBL CD083856 [CTCGAGGCAAGAATCGGCACGAGGTTTAGCACTGACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGTTGAGGAGGGTGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGCAGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCACTCAGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATTGGGGCAATTCAAAGACAACAAGCTGCACGTGCTGTTGAAACTGATCGTAATATTGCTGAGACTTTTGAAGATTTGAGTCAACTTATGAACAACGCAAGTGAAATG] [-] EMBL CD158372 [ AAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTGTGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGTTGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGAATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCACTCAGATTTTAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8431#0 TCTTGTGATTTGTTGCATGGTACGATATCTGTCATCTGTGTGATTTATGGACCGTTTTCG 60 consensus_8431#1 ------------------------------------------------------------ consensus_8431#0 TTGGTGCTCAGACGATGTTGAGAATTATGGATCTACCAATCAAGATAGCCTACATGAAGA 120 consensus_8431#1 ------------------------------------------------------------ consensus_8431#0 ATCAGTAGTATTACAAAAATCTGGTATCCGTTTATACGATGGACCTAATCGAAGTGCTTT 180 consensus_8431#1 ------------------------------------------------------------ consensus_8431#0 CGACGGAGGCTTGCTCAAGCTGACAACTCATCGTATCTTATGGTCTGATCCTTTAGCACT 240 consensus_8431#1 --------------------------CTCGAGGCAAGAATCGGCACGAGG-TTTAGCACT 33 *** * * ** ** ********* consensus_8431#0 GACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGTTGAGGAGGG 300 consensus_8431#1 GACAAGTTCTTTTATAGCTCTTCCATTGGCTGCTATAATTTCTGTGAAGGTTGAGGAGGG 93 ************************************************************ consensus_8431#0 TGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGC 360 consensus_8431#1 TGGGGGTAGTCTGACAGTAAGCCGTACACCGAAATTGATTCTTCGTTTGTTAACTGCAGC 153 ************************************************************ consensus_8431#0 AGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTG 420 consensus_8431#1 AGCGCTACAAAATGTATTGGCAAGTTTACCGAATCCTCCGCAGTGGATTGAGCACTGGTG 213 ************************************************************ consensus_8431#0 TGATGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGT 480 consensus_8431#1 TGAAGGTGTTGAAGGTTCCGGTTCTGGAATTGACAGTATCACTTTTAGTGCGACTGCAGT 273 *** ******************************************************** consensus_8431#0 TGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGA 540 consensus_8431#1 TGTCAGCTATTCAAAAGAAGACCATGTCAAATTAGGCTTTCCAATGGCTGGGCATCATGA 333 ************************************************************ consensus_8431#0 ATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCATTC 600 consensus_8431#1 ATTTCTACAGTCTCTAAACGAAGTCCTAAAGGTAAAACTGTGGACATTGTCTTATCACTC 393 ********************************************************* ** consensus_8431#0 AGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATT----------------- 643 consensus_8431#1 AGATTTTAAATTGACAACTAAGTCGTTTGGTACTGGAGGTATTGGGGCAATTCAAAGACA 453 ******************************************* consensus_8431#0 ------------------------------------------------------------ consensus_8431#1 ACAAGCTGCACGTGCTGTTGAAACTGATCGTAATATTGCTGAGACTTTTGAAGATTTGAG 513 consensus_8431#0 ---------------------------- consensus_8431#1 TCAACTTATGAACAACGCAAGTGAAATG 541 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||