These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 778 fasta sequence [ATAATCGGTCTGTTCGTTTAGCTGCTAAGCGAAGAAAAACGGATTCAACTCATAAAGCCAAAGAAGCATCATCATCATCTACCGATAAAAGAAAGACAACAATTCAACAAAAATCTAAGCAAATCATAAAAAAATGGCATATAAGACCAAGTTTAAGAGAAAATGGTGTTATTGTTATATTATTAGCTGGACGACATCGTGGTAAACGTGTAGTTAGTTTAGGTCAACATAAATCAACTGGTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAAGTAGTTTATCACTTCCTGAAAGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAAATTCAAAAACTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTCATAGTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTCAATTGGTAAATATGATAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTCAATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCTTTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGACTTACTTAC] [-] EMBL CD194391 [ATAATCGGTCTGTTCGTTTAGCTGCTAAGCGAAGAAAAACGGATTCAACTCATAAAGCCAAAGAAGCATCATCATCATCTACCGATAAAAGAAAGACAACAATTCAACAAAAATCTAAGCAAATCATAAAAAAATGGCATATAAGACCAAGTTTAAGAGAAAATGGTGTTATTGTTATATTATTAGCTGGACGACATCGTGGTAAACGTGTAGTTAGTTTAGGTCAACATAAATCAACTGGTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAA ] [+] EMBL CD144762 [ TTAGTTTAGGTCAACATAAATCAACTGGTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAAGTAGTTTATCACTTCCTGAAAGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAAATTCAAAAACTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTCATAGTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTCAATTGGTAAATATGATAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTCAATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCTTTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGACTTACTTA ] [+] EMBL CD144798 [ TTAGTTTAGGTCAACATAAATCAACTGGTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAAGTAGTTTATCACTTCCTGAAAGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAAATTCAAAAACTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTCATAGTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTCAATTGGTAAATATGATAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTCAATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCTTTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGACTTACTTA ] [-] EMBL CD147994 [ ATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATCCAGATTATGTAATTGCTACTAAAACAAAAATTGATTTAAGTAGTTTATCACTTCCTGAAAGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAACTTCAAAAAGTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTC ] [-] EMBL CD071842 [ TCAACCACATGTAAAAAATTCAAAAAGTCTCATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACTTATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAAGCAATTAAATGTCATAGTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTCAATTGGTAAATATGTTAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTCAATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCTTTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGGCTAACTTAC] consensusID : consensus_8437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [ACCTTCAGATGGATTCAGTAAGAAGCCATCAAGAAATAGAAAAACCAAAAAAGGCAAAACGCAATCAGATGATAATCATTCTTCAAAGTCTACACCTGCCATATCACCTAATTCTTTGATACCGGTTGATGAAGTACATAGTACTGTATATAATATTAGTAGTAGTAGTAACAGTAGAAACATTGATAATAATAATAATTTCACATCATTATCAATTCCATTTTGTAAAACAATTTGTAAAGTTTCTCATGAAGAACTACAGAACTCACTTAGTCATAGAAGTACATCTTCCTTGAAGGTAAAGAATAAAAAACATCATTTGAAAAGTAACAAATTAAAGAATAGTGAAACAAACATTCTGAATCAAATGGATGATACATTGAATGATGAAATGGCAATAGGACAATCATCACAAACAGTTACTGAAGAAGAAGCACAAGAAAATACTAGAAAACGACGTTTTCCTAAGTCTTTCTTGACGCAAGTGGATCCGAGATATAATCGGTCTGTTCGTTTAGCTGCTAAACGAAGAANAACGGATTNCACTC] [+] EMBL CD185452 [ACCTTCAGATGGATTCAGTAAGAAGCCATCAAGAAATAGAAAAACCAAAAAAGGCAAAACGCAATCAGATGATAATCATTCTTCAAAGTCTACACCTGCCATATCACCTAATTCTTTGATACCGGTTGATGAAGTACATAGTACTGTATATAATATTAGTAGTAGTAGTAACAGTAGAAACATTGATAATAATAATAATTTCACATCATTATCAATTCCATTTTGTAAAACAATTTGTAAAGTTTCTCATGAAGAACTACAGAACTCACTTAGTCATAGAAGTACATCTTCCTTGAAGGTAAAGAATAAAAAACATCATTTGAAAAGTAACAAATTAAAGAATAGTGAAACAAACATTCTGAATCAAATGGATGATACATTGAATGATGAAATGGCAATAGGACAATCATCACAAACAGTTACTGAAGAAGAAGCACAAGAAAATACTAGAAAACGACGTTTTCCTAAGTCTTTCTTGACGCAAGTGGATCCGAGATATAATCGGTCTGTTCGTTTAGCTGCTAAACGAAGAANAACGGATTNCACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8437#0 ATAATCGGTCTGTTCGTTTAGCTGCTAAGCGAAGAAAAACGGATTCAACTCATAAAGCCA 60 consensus_8437#1 -----------------------------------------------------ACCTTCA 7 * ** consensus_8437#0 AAGAAGCATCATCATCATCTACCGATAAAAGAAAGACAACAATTCAACAAAAATCTAAGC 120 consensus_8437#1 GATGGATTCAGTAAGAAGCCATCAA-GAAATAGAAAAACCAAAAAAGGCAAAACGCAATC 66 * * * * * * * * *** * * * * *** * **** ** * consensus_8437#0 AAATCATAAAAAAATGGCATATAAGACCAAGTTTAAGAGAAAATGGTGTTATTGTTATAT 180 consensus_8437#1 AGATGATAATCATTCTTCA---AAGTCTACACCTGCCATATCACCTAATTCTT-TGATAC 122 * ** **** * ** *** * * * * * * ** ** * *** consensus_8437#0 TATTAGCTGGACGACATCGTGGTAAACGTGTAGTTAGTTTAGGTCAACATAAATCAACTG 240 consensus_8437#1 CGGTTGATGAAGTACATAGTACTGTATATAATATTAGTAGTAGTAGTAACAGTAGAAACA 182 * * ** * **** ** * * * ***** ** * * ** consensus_8437#0 GTCTATTACTTGTTACTGGACCATATTGTTATAATGGTTGTCCATTACGTCGTATTCATC 300 consensus_8437#1 --TTGATAATAATAATAATTTCACATCATTATCAATTCCATTTTGTAAAACA-ATTTGTA 239 * ** * * * ** ** **** * * ** * *** * consensus_8437#0 CAGATTATGTAATTGCTACTAAAACAAAAATTGATTTA-AGTAGTTTATCACTTCCTGAA 359 consensus_8437#1 AAGTTTCT-CATGAAGAACTACAGAACTCACTTAGTCATAGAAGTACATC-TTCCTTGAA 297 ** ** * * **** * * * * * * * ** *** *** * * **** consensus_8437#0 AGAATTCATACCAAAAAATATTTTACTAAATCAACCACATGTAAAAAATTCAAAAACTCT 419 consensus_8437#1 GGTAA--AGAATAAAAAACATCATTTGAAAAGTAACAAAT-TAAAGAATAGTGAAACAAA 354 * * * * ****** ** * *** * ** ** **** *** **** consensus_8437#0 CATCAACAAAATCGCTTCGCAGATATTCTTGACCATGGTGTTACTAATGAGCAATCAACT 479 consensus_8437#1 CATT--CTGAATCAAATGGATGATACATTGAATGATGAAATGGCAATAGGACAATCATCA 412 *** * **** * * **** * * *** * * * * ****** * consensus_8437#0 TATCAACCAAATAATGAAAAGAAAATGGATCAAATTTACATAGATAATGAAGTAAGAAAA 539 consensus_8437#1 ---CAAACAGTTACTGAAGAAGAAGCACAAGAAAAT-AC-TAGAAAACGACGTTTTCCTA 467 *** ** ** **** * ** * *** * ** **** ** ** ** * consensus_8437#0 GCAATTAAATGTCATA-GTGATTCCAAGTTACTAATTGGCTACTTAAAATCATTATTCTC 598 consensus_8437#1 AGTCTTTCTTGACGCAAGTGGATCCGAGATA-TAATCGGTCTGTTCGTTTAGCTGCT--- 523 ** ** * * *** *** ** ** **** ** ** * * * consensus_8437#0 AATTGGTAAATATGATAAACCACATGAAATGTTATTTTAAATAAGACTGTAAACATATTC 658 consensus_8437#1 AAACGAAGAANAACGGATTNCACTC----------------------------------- 548 ** * ** * * *** consensus_8437#0 AATCCATATACATATACATATACATACATAGATAGGCAAACAAACTATACAAATTGACCT 718 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 TTCTAAATCATATTGACTCTTCTTTACTATACTTACCTACTTACTTGCTGACTTACTTAC 778 consensus_8437#1 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||