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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 725 fasta sequence
[CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGTATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGACTATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCATATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTGACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTAGGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATACTTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAACCTCTTGAGTAATCTCTAC-CGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATACATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTGACCAAACAATTAGTGTATCTTGCTGCTTTTGATATGCTGTATCTGGCTGTATTTTTGACTCAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCAGTATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAACATGTAC]
[+] EMBL CD091471 [CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGTATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGACTATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCATATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTGACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTAGGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAG ]
[+] EMBL CD177828 [ gttgcAAAGATGATGCAACGATTCCATATCCTCCAGATCTTCTGCTGTGTGAAAGACATCAACTAACTGATGGAGATAATTAG ]
[+] EMBL CD157241 [ TAGGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATACTTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAACCTCTTGAGTAATCTCTAC CGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATACATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTGACCAAACAATTAGTGTATCTTGCTGCTTTTGATATGCTGTATCTGGCTGTATTTTTGACTCAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCAGTATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAACATGTAC]
[-] EMBL CD140084 [ CTAAGAGGCTGGATACTTTGCATCATTGTAGGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCGACAACCTCTTGAGTAATCTCTACTCGATGGAT ]
consensusID : consensus_8439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 364 fasta sequence
[GTAAGAAACTGAGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCTTTACAAAGAGCGATAGGTCTCTCTGCGATGAGTCAGATCTGTATCCGCCGCTTTCAAACGTGTAAAAAGTCGACACATAAACTCTTCATCTTCCTGAAGAGCCCGAATAATCTCCATCTTGTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGGTGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAAATCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGT]
[+] EMBL CD181160 [GTAAGAAACTGAGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCTTTACAAAGAGCGATAGGTCTCTCTGCGATGAGTCAGATCTGTATCCGCCGCTTTCAAACGTGTAAAAAGTCGACACATAAACTCTTCATCTTCCTGAAGAGCCCGAATAATCTCCATCTTGTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGGTGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAAA ]
[-] EMBL CD188835 [ TTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGGTGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAAATCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8439#0 CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGT 60
consensus_8439#1 ------------------------------------------------------------
consensus_8439#0 ATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGAC 120
consensus_8439#1 ------------------------------------------------------------
consensus_8439#0 TATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCA 180
consensus_8439#1 ------------------------------------------------------------
consensus_8439#0 TATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTG 240
consensus_8439#1 ------------------------------------------------------------
consensus_8439#0 ACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTA 300
consensus_8439#1 -------------------------------------------------GTAAGAAACTG 11
* * ****
consensus_8439#0 GGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATAC 360
consensus_8439#1 AGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCTTTACAAAGAGC 71
* *** * * * * * * * * * ** * * * *
consensus_8439#0 TTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAA 420
consensus_8439#1 GATAGGTCTCTCTGCGATGAGTCAGATCTGTATC--CGCCGCTTTCAAACGTGT-AAAAA 128
* ** * * * * * *** ** ** ** ** ** ** ** ** **
consensus_8439#0 CCTCTTGAGTAATCTCTACCGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATA 480
consensus_8439#1 GTCGACACATAAACTCT---------TCATCTTCCTGAAGAGCCCGAATAATCTCCATCT 179
*** **** ** * * **** * *** * *** * ***
consensus_8439#0 CATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTG 540
consensus_8439#1 TGTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAG 239
* * ** ** * * * ** ***** ** * ** *
consensus_8439#0 ACCAAACAATTAGTGTATCTTGC-TGCTTTTGATATGCTGTATCTGGCTGTATTTTTGAC 599
consensus_8439#1 GTGGGAGA--CAGCA-GTCTTGTATGTACTGAACGCGATATGTTTGA-TGTATTTTTGTT 295
* * ** ***** ** * * * * * * ** **********
consensus_8439#0 TCAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCA 659
consensus_8439#1 ACCAAA---TCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGT--AGCTTTATTTCTGA 350
* * * * * ** *** * ** * * * * * * ** *
consensus_8439#0 GTATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAAC 719
consensus_8439#1 GAAAATCACGATGT---------------------------------------------- 364
* * * * * **
consensus_8439#0 ATGTAC 725
consensus_8439#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||