cluster # 8448

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Schistosoma mansoni
cluster # 8448 cluster # 8448 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8448#0 length = 876 sequences # 4

consensus_8448#1 length = 523 sequences # 2

consensusID : consensus_8448#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 876
fasta sequence

                              [AGACATTTATTATGCGATACAGGAAATTATCCAGAAGGTTATGGATTATCGTTTAGTAGGATAACTTGCACATATTCAATGAATAACAGGTGTAGGCGGCACGGTAGTTTGTCCAAATAAAGTATCGGCATCGTTCTCTTTTTGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCACTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGAGTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCT-GAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTCAAACGCATCACTGATACCTGCTTGATTTCCATGACGTGAACCAGCATAAGCTCGTCCATCTTCCGATCCAACTAAAAAATTGTTAACATTCTCATCTACGAACGACATGCATGTTGCAGCTACAGTACGAGCTTGCCTATGCGTTAATTCCATGGCTTGTTGAGGTTGACCCAGCATATCTAAACTCCATGTACATAATTTTCCATCAGAACTTATACTTAACAAATTGTGTGCATTCAATGATCCTGCAATCATAACTGCATGAAC]

[+] EMBL CD074221             [AGACATTTATTATGCGATACAGGAAATTATCCAGAAGGTTATGGATTATCGTTTAGTAGGATAACTTGCACATATTCAATGAATAACAGGTGTAGGCGGCACGGTAGTTTGTCCAAATAAAGTATCGGCATCGTTCTCTTTTTGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCACTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGAGTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCT GAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTC AACGCATCACTGATACCTGCTTGATTTCC                                                                                                                                                                                                                                             ]
[-] EMBL CD127599             [                                                                                                               TCCAAATAAAGTATCGGCATCGTTCTCTTTTTGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCACTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTATCTATGGTTGACCGGGAATCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD126032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCTNGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTCAAACGCATCACTGATACCTGCTTGATTTCCATGACGTGAACCAGCATAAGCTCGTCCATCTTCCGATCCAACTAAAAAATTGTTAACATTCTCATCTACG                                                                                                                                                                       ]
[-] EMBL CD125961             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCT GAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGTTGACCTTCAAACGCATCACTGATACCTGCTTGATTTCCATGACGTGAACCAGCATAAGCTCGTCCATCTTCCGATCCAACTAAAAAATTGTTAACATTCTCATCTACGAACGACATGCATGTTGCAGCTACAGTACGAGCTTGCCTATGCGTTAATTCCATGGCTTGTTGAGGTTGACCCAGCATATCTAAACTCCATGTACATAATTTTCCATCAGAACTTATACTTAACAAATTGTGTGCATTCAATGATCCTGCAATCATAACTGCATGAAC]




>consensus_8448#0
AGACATTTATTATGCGATACAGGAAATTATCCAGAAGGTTATGGATTATCGTTTAGTAGG
ATAACTTGCACATATTCAATGAATAACAGGTGTAGGCGGCACGGTAGTTTGTCCAAATAA
AGTATCGGCATCGTTCTCTTTTTGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTG
TGAAAACATCGTCCACTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACAT
GTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACA
TTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTG
GTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATG
TATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAG
ACGAGTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAG
TGGTGAAATGGTCACAGAATCTCTGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTG
ATGACCTTCAAACGCATCACTGATACCTGCTTGATTTCCATGACGTGAACCAGCATAAGC
TCGTCCATCTTCCGATCCAACTAAAAAATTGTTAACATTCTCATCTACGAACGACATGCA
TGTTGCAGCTACAGTACGAGCTTGCCTATGCGTTAATTCCATGGCTTGTTGAGGTTGACC
CAGCATATCTAAACTCCATGTACATAATTTTCCATCAGAACTTATACTTAACAAATTGTG
TGCATTCAATGATCCTGCAATCATAACTGCATGAAC

consensusID : consensus_8448#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 523
fasta sequence

                              [CATAGTAGGTTGGTAGTTTGTCCATTTAAAGTATCGGCATCGTTCTCTTTTCGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCTCTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGA-GT-TTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCTGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTCAAACG]

[+] EMBL CD128020             [CATAGTAGGTTGGTAGTTTGTCCATTTAAAGTATCGGCATCGTTCTCTTTTCGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCTCTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGA GT TTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCTGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTCAAACG]
[-] EMBL CD068604             [                                                                                                                          TGCCATGTGTTCATTCAAATCGAACATGTGAATACGTCCATGATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAGACGACATGTTCTTTc                                                                                                                         ]




>consensus_8448#1
CATAGTAGGTTGGTAGTTTGTCCATTTAAAGTATCGGCATCGTTCTCTTTTCGTTCGACT
GCAAGCTGTCGAAGTTCGCTGATTGTGTGTGAAAACATCGTCCTCTCATCTGCATGAGGG
ATTGCCATGGTTTCATTCAAATCGAACATGTGAATACGTCCATTATCATCACCGATAGCT
ATATGTGAACCAGATGAGTGGAAACGACATTTGTTTAACGATGGTTGACCGGGAATCACT
GTACGAACTGATGGGACTTCGCTGTTTTGGTTTAAATTCCATAAATCAAGGCGTCCTGTA
CAATCGACAGTTGCAAATACAGCTGGATGTATCGGTGACCAATGAGCATCAAAAACATAA
TCTGAAGCTTCTTCAAATGAGCATATAAGACGAGTTTCTTTAACAGACCACAGTTTTACG
GACCAATCAAGAGAAGTAGTAAGAAACAGTGGTGAAATGGTCACAGAATCTCTGAGTGGA
TGAGACGAAATCGATGTGATAGGAGCCTGATGACCTTCAAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8448#0      AGACATTTATTATGCGATACAGGAAATTATCCAGAAGGTTATGGATTATCGTTTAGTAGG 60
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      ATAACTTGCACATATTCAATGAATAACAGGTGTAGGCGGCACGGTAGTTTGTCCAAATAA 120
consensus_8448#1      ------------------------------CATAGTAGGT-TGGTAGTTTGTCCATTTAA 29
                                                      ***  **   *************  ***

consensus_8448#0      AGTATCGGCATCGTTCTCTTTTTGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTG 180
consensus_8448#1      AGTATCGGCATCGTTCTCTTTTCGTTCGACTGCAAGCTGTCGAAGTTCGCTGATTGTGTG 89
                      ********************** *************************************

consensus_8448#0      TGAAAACATCGTCCACTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACAT 240
consensus_8448#1      TGAAAACATCGTCCTCTCATCTGCATGAGGGATTGCCATGGTTTCATTCAAATCGAACAT 149
                      ************** *********************************************

consensus_8448#0      GTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACA 300
consensus_8448#1      GTGAATACGTCCATTATCATCACCGATAGCTATATGTGAACCAGATGAGTGGAAACGACA 209
                      ************************************************************

consensus_8448#0      TTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTG 360
consensus_8448#1      TTTGTTTAACGATGGTTGACCGGGAATCACTGTACGAACTGATGGGACTTCGCTGTTTTG 269
                      ************************************************************

consensus_8448#0      GTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATG 420
consensus_8448#1      GTTTAAATTCCATAAATCAAGGCGTCCTGTACAATCGACAGTTGCAAATACAGCTGGATG 329
                      ************************************************************

consensus_8448#0      TATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAG 480
consensus_8448#1      TATCGGTGACCAATGAGCATCAAAAACATAATCTGAAGCTTCTTCAAATGAGCATATAAG 389
                      ************************************************************

consensus_8448#0      ACGAGTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAG 540
consensus_8448#1      ACGAGTTTCTTTAACAGACCACAGTTTTACGGACCAATCAAGAGAAGTAGTAAGAAACAG 449
                      ************************************************************

consensus_8448#0      TGGTGAAATGGTCACAGAATCTCTGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTG 600
consensus_8448#1      TGGTGAAATGGTCACAGAATCTCTGAGTGGATGAGACGAAATCGATGTGATAGGAGCCTG 509
                      ************************************************************

consensus_8448#0      ATGACCTTCAAACGCATCACTGATACCTGCTTGATTTCCATGACGTGAACCAGCATAAGC 660
consensus_8448#1      ATGACCTTCAAACG---------------------------------------------- 523
                      **************                                              

consensus_8448#0      TCGTCCATCTTCCGATCCAACTAAAAAATTGTTAACATTCTCATCTACGAACGACATGCA 720
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      TGTTGCAGCTACAGTACGAGCTTGCCTATGCGTTAATTCCATGGCTTGTTGAGGTTGACC 780
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      CAGCATATCTAAACTCCATGTACATAATTTTCCATCAGAACTTATACTTAACAAATTGTG 840
consensus_8448#1      ------------------------------------------------------------
                                                                                  

consensus_8448#0      TGCATTCAATGATCCTGCAATCATAACTGCATGAAC 876
consensus_8448#1      ------------------------------------