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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1117 fasta sequence
[TTTCGAGAATTGAGTGCCAGGGAGATATTTATGTGGTCTGATGA-GAATCGTTATCCAGAAAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGGCCGAAAAAAAGGCTGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATATCAGATTGCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTAAATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTCTATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTATAGGTAGATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATCTAAACGGAAAACTTCTCTTGAATCCAGTTCAAAAGACCAATCTACATCAAAAAAACAAATTAGGAGTGGTGATATTCGAAAGTTTGTCACCATTAATGATGTGAAAGAAAATACCTCTACAGAATTCGCTAGTCATCCGAACAATGGTGGAAGCAGTTATTCATCAGTTCATGTTTGGCCTAGCGATGATAAAGGTCATATCCTNCGAAATGGTCATTCGTCATGTCAAGATATGGCACTGGTCGAATCGAAACCAAATGTAGTTGAAACAATTGATTTATCAGAAGTATCCTGCCCTAACTGCTCTTGTACTGTTTTGCTCTCTCGGATTAATCAACACTTAGATATTTGCCTTTCATAGAACTATTTTTACAAATTTTTGAAAATAAACTTCTT]
[+] EMBL CD120571 [TTTCGAGAATTGAGTGCCAGGGAGATATTTATGTGGTCTGATGACGAATCGTTATCCAGAAAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGACCG AAAAAAGGCTGAGGACAAAAACAATTTTTT ]
[-] EMBL CD097147 [ GAATTGAGTGCCAGGGAGATATTTATGTGGTCTGATGACGAATCGTNATCCAGAAAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGGCCGAAAAAAAGGCCGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATATCAGATTGCTGTTT ]
[+] EMBL CD081868 [ g agggCGTTATCCAGAAAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGGCCGAAAAAAAGGCTGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATATCAGATTGCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTAAATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTCTATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTATAGGTAGATTTATAAAAATCAAGGAACCAGTCAA ]
[+] EMBL CD078777 [ ACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTCTATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTATAGGTAGATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATCTAAACGGAAAACTTCTCTTGAATCCAGTTCAAAAGACCAATCTACATCAAAAAAACAAATTAGGAGTGGTGATATTCGAAAGTTTGTCACCATTAATGATGTGAAAGAAAATACCTCTACAGAATTCGCTAGTCATCCGAACAATGGTGGAAGCAGTTATTCATCAGTTCATGTTTGGCCTAGCGATGATAAAGGTCATATCCTNCGAAATGGTCATTCGTCAT ]
[-] EMBL CD076473 [ TATANCTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTCTATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTATAGGTAGATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATCTAAACGGAAAACTTCTCTTGAATCCAGTTCAAAAGACCAATCTACATCAAAAAAACAAATTAGGAGTGGTGATATTCGAAAGTTTGTCACCATTAATGATGTGAAAGAAAATACCTCTACAGAATTCGCTAGTCATCCGAACAATGGTGGAAGCAGTTATTCATCAGTTCATGTTTGGCCTAGCGATGATAAAGGTCATATCCTCGGAAATGGTCATTCGTCATGTCAAGATATGGCACTGGTCGAATCGAAACCAAATGTAGTTGAAACAATTGATTTATCAGAAGTATCCTGCCCTAACTGCTCTTGTACTGTTTTGCTCTCTCGGATTAATCAACACTTAGATATTTGCCTTTCATAGAACTATTTTTACAAATTTTTGAAAATAAACTTCTT]
consensusID : consensus_8466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[CANATTTTATGTGGTCTGATGACGAATCGTTTTCCAGAAAAACTAACGTCACCAGGTCTGTAGGTCACCAAAACAACCTGGNCCGAAAAAAAGGTACGCTTTTATTCACTATAGTCCTACTTATGGGACAGGCTGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATGTGGGATTGCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTAAATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAA]
[+] EMBL CD082889 [CANATTTTATGTGGTCTGATGACGAATCGTTTTCCAGAAAAACTAACGTCACCAGGTCTGTAGGTCACCAAAACAACCTGGNCCGAAAAAAAGGTACGCTTTTATTCACTATAGTCCTACTTATGGGACAGGCTGAGGACAAAAACAATTTTTTATCTTTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATGTGGGATTGCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTAAATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAATGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGGAGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATCGTGATGACCATGGACCCAATTTCATATCGCACATGCATCGCATCAATTCGTTGGCTGGAGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTGGTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAA]
consensusID : consensus_8466#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[GATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATTTAAACGGAAAATTTTTTTTGAATCCAGTTCAAAAGACCCATTTACATCAAAAAAACAAATTAGGAGGGGTGAAATTTGAAAGTTTGTCCCCATTAATGATGTGAAAAAAAAAACCTTTACAGAATTTGGTAGTCATCCGAACAATGGGGGAAGCAGTTATTCATCAGTTCATGTTTGGCCCAGCGATGAAAAAGGTCAAATCCTCGGAAAAGGTCATTTGTCATGTCAAAAAAAGGCCCTGGTGGAATTGAAACCAAATGTAGTTGAAACAATTGATTTATCAAAAGGATCCTGCCCCAACGGGTTTTGGACTGTTTTGCTTTTTCGGATTAATCAACCCTTAAAAATTTGCCTTTCAAAAAAAAATTTTTACAAATTTTTGAAAAAAAACTTTTT]
[-] EMBL CD073237 [GATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATTTAAACGGAAAATTTTTTTTGAATCCAGTTCAAAAGACCCATTTACATCAAAAAAACAAATTAGGAGGGGTGAAATTTGAAAGTTTGTCCCCATTAATGATGTGAAAAAAAAAACCTTTACAGAATTTGGTAGTCATCCGAACAATGGGGGAAGCAGTTATTCATCAGTTCATGTTTGGCCCAGCGATGAAAAAGGTCAAATCCTCGGAAAAGGTCATTTGTCATGTCAAAAAAAGGCCCTGGTGGAATTGAAACCAAATGTAGTTGAAACAATTGATTTATCAAAAGGATCCTGCCCCAACGGGTTTTGGACTGTTTTGCTTTTTCGGATTAATCAACCCTTAAAAATTTGCCTTTCAAAAAAAAATTTTTACAAATTTTTGAAAAAAAACTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8466#0 TTTCGAGAATTGAGTGCCAGGGAGATATTTATGTGGTCTGATGA-GAATCGTTATCCAGA 59
consensus_8466#1 ---------------------CANAT-TTTATGTGGTCTGATGACGAATCGTTTTCCAGA 38
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 AAAACTAACGTCACCAGTTCTGTAGGTCACCAAAACAACCTGGCCGAAAAAAA------- 112
consensus_8466#1 AAAACTAACGTCACCAGGTCTGTAGGTCACCAAAACAACCTGGNCCGAAAAAAAGGTACG 98
consensus_8466#2 -----------------------GATTTATAAAAATCAAGGAACCAGTCAAGAA------ 31
* * **** * * ** *
consensus_8466#0 --------------------------------GGCTGAGGACAAAAACAATTTTTTATCT 140
consensus_8466#1 CTTTTATTCACTATAGTCCTACTTATGGGACAGGCTGAGGACAAAAACAATTTTTTATCT 158
consensus_8466#2 --------------------------------AGTTCCATTTAAACGGAAAATTTTTTTT 59
* * *** ** **** * *
consensus_8466#0 TTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATATCAGATT- 199
consensus_8466#1 TTGTGTTGCCTGGCTGATCCTGTTTGGGAATTATTGGACCCTCTACCAGATGTGGGATT- 217
consensus_8466#2 GAATCCAGTTCAAAAGACCCA--TTTACATCAAAAAAACAAATTAGGAGGGGTGAAATTT 117
* * ** ** ** * * ** ** ** * ***
consensus_8466#0 -GCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTA 258
consensus_8466#1 -GCTGTTTTCCTCTTTCGACAGTCAGTTTTTCGGAAATTCTCTTGGATGTGTAGAAGTTA 276
consensus_8466#2 GAAAGTTTGTCCCCATTAATGAT--GTGAAAAAAAAAACCTTTACAGAATTTGGTAGTCA 175
**** * * * * * ** *** ** * * * * *** *
consensus_8466#0 AATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAA 318
consensus_8466#1 AATGGAGCTCTCGGATGACGCTTTGTGCAGGAGTTTGCAAATTTCACAAACCTTATGGAA 336
consensus_8466#2 TCCGAA-CAATGGGGGAAGCAGTTATTCATCAGTT--CATGTTTGGCCCAGCG-ATGAAA 231
* * * * ** * ** * ** **** ** *** * * * *** **
consensus_8466#0 TGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGG 378
consensus_8466#1 TGTGTTCCATCAGCCTAAGTGAACCTCTACTGAAATTTAGACCGCGGAAAGATCTCGTGG 396
consensus_8466#2 AAGGTCAAATCCTCGGAAAAGGTCATTTG-------TCATGTCAAAAAAAGGCCC--TGG 282
** *** * ** * * * * * * * **** * ***
consensus_8466#0 AGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATC 438
consensus_8466#1 AGACTCTGCTGCATGAAATGATTCATGCATTTTTATTCATAACAAGGAGGGACAAGGATC 456
consensus_8466#2 TGGAATTGAAACCAAATGTAGTTGAAACAATTG-ATTTATCAAAAGGATCCT-----GCC 336
* ** * * * ** * ** ** *** ** * ***** *
consensus_8466#0 GTGATGACCATGGACCCAATTTCATATCGCACATGCATCG--CATCAATTCGTTGGCTGG 496
consensus_8466#1 GTGATGACCATGGACCCAATTTCATATCGCACATGCATCG--CATCAATTCGTTGGCTGG 514
consensus_8466#2 CCAACGGGTTTTGGACTGTTTTGCTTTTTCGGATTAATCAACCCTTAAAAATTTGCCTTT 396
* * * * * *** * * * ** *** * * ** *** **
consensus_8466#0 AGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTG 556
consensus_8466#1 AGTAAATATTACTGTTTACCACTCATTTCATGATGAAGTTGATACATATCGCACTCACTG 574
consensus_8466#2 --CAAAAAAAAATTTTTACAAATT-TTTGAAAAAAAACTTTTT----------------- 436
*** * * * ***** * * *** * * ** ** *
consensus_8466#0 GTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAAACGTTC 616
consensus_8466#1 GTGGCGTTGTACCGGTCCATGTCGCGACCGTCCACCATACTTTGGCTATGTTAA------ 628
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 TATGAATAGAGTGCCTGGTCCTAAGGATACTTGGTGGAGTCAGCATCAAGCTACTTGTAT 676
consensus_8466#1 ------------------------------------------------------------
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 AGGTAGATTTATAAAAATCAAGGAACCAGTCAAGAAAGTTCCATCTAAACGGAAAACTTC 736
consensus_8466#1 ------------------------------------------------------------
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 TCTTGAATCCAGTTCAAAAGACCAATCTACATCAAAAAAACAAATTAGGAGTGGTGATAT 796
consensus_8466#1 ------------------------------------------------------------
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 TCGAAAGTTTGTCACCATTAATGATGTGAAAGAAAATACCTCTACAGAATTCGCTAGTCA 856
consensus_8466#1 ------------------------------------------------------------
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 TCCGAACAATGGTGGAAGCAGTTATTCATCAGTTCATGTTTGGCCTAGCGATGATAAAGG 916
consensus_8466#1 ------------------------------------------------------------
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 TCATATCCTNCGAAATGGTCATTCGTCATGTCAAGATATGGCACTGGTCGAATCGAAACC 976
consensus_8466#1 ------------------------------------------------------------
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 AAATGTAGTTGAAACAATTGATTTATCAGAAGTATCCTGCCCTAACTGCTCTTGTACTGT 1036
consensus_8466#1 ------------------------------------------------------------
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 TTTGCTCTCTCGGATTAATCAACACTTAGATATTTGCCTTTCATAGAACTATTTTTACAA 1096
consensus_8466#1 ------------------------------------------------------------
consensus_8466#2 ------------------------------------------------------------
consensus_8466#0 ATTTTTGAAAATAAACTTCTT 1117
consensus_8466#1 ---------------------
consensus_8466#2 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||