These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 654 fasta sequence [TCTGTCCTGCTAGTACGATAACGCGCGCTATTCGAACGGGAAGTTTAGTCCTAACGTGATTTACATTTCTCAAACTTTTGCTGTGTTCTTACGCAACAAAAGTATCATATCCAATCCAAAGAATCTATTCTGAGCTATACGTTCGGGCTGATCATTTGAGAGGACATTCGAAGAAAGTTCGAAAACCGAGATCAAATCGTCTACATCTGGTGTTTCGCTTCTCTCACCTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAACACCTTCTGTTGATATATTCAAGACGAGATTGGACCTACACAGTGTAACAAACTGCAAGGATTAAAATAGGTCAATAGACCTCCTATCCTTATTACTGAAGACTGAATAATGGTGTAAATGAGTATGGACAGAATACAAGATTTTGCTTAGTAAGCTTCTGAGTCAAGTAACAGTTGATCACTGGTGCCTTTAAGTCAGGACCTGGGTATGTTTGACAAGCAGAAAGTAAATGTTAGCAAATTACAATGAAATAATGTCCCAAGTCCTTGAGAATATATCAGCTTTTCTCTTTTACCCGTTCCTCACCAACGATGCAAATCCCCCAAAGTACACGAAGCCTCTTAAAGGACTCTTGAAGAGTCTCAGTTGACATTCAATTCCAG] [+] EMBL CD190111 [TCTGTCCTGCTAGTACGATAACGCGCGCTATTCGAACGGGAAGTTTAGTCCTAACGTGATTTACATTTCTCAAACTTTTGCTGTGTTCTTACGCAACAAAAGTATCATATCCAATCCAAAGAATCTATTCTGAGCTATACGTTCGGGCTGATCATTTGAGAGGACATTCGAAGAAAGTTCGAAAACCGAGATCAAATCGTCTACATCTGGTGTTTCGCTTCTCTCACCTAGTGAATTACTG ] [+] EMBL CD114960 [ GAATCTATTCTGAGCTATACGTTCGGGCTGATCATTTGAGAGGACATTCGAAGAAAGTTCGAAAACCGAGATCAAATCGTCTACATCTGGTGTTTCGCTTCCCTCACCTAGTGAATTACTGGAATTCTCTACCAGAACACGTAATATCAACACCTTCTGTTGATATATTCAAGACGAGATTGGACCTACACAGTGTAACAAACTGCAAGGATTAAAATAGGTCAATAGACCTCCTATCCTTATTACTGAAGACTGAATAATGGTGTAAATGAGTATGGACAGAATACAAGATTTTGCTTAGTAAGCTTCTGAGTCAAGTAACAGTTGATCACTGGTGCCTTTAAGTCAGGACCTGGGTATGTTTGACAAGCAGAAAGTAAATGTTAGCAAATTACAATGAAATAATGTCCCAAGTCCTTGAGAATATATCAGCTTTTCTCTTTTACCCGTTCCTCACCAACGATGCAAATCCCCCAAAGTACACGAAGCCTCTTAAAGGACTCTTG ] [-] EMBL CD202602 [ TCACTGGTGCCTTTAAGTCAGGGCCTGGGTATGTTTGACAAGCAGAAAGTAAATGTTAGCAAATTACAATGAAATAATGTCCCCCCCCCCTGAGAATATATCAGCTTTTCTCTTTTACCCGTTCCTCACCAACGATGCAAATCCCCCAAAGTACACGAAGCCTNTTAAAGGACTCTTGAAGAGTCTCAGTTGACATTCAATTCCAG] consensusID : consensus_8469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [CCACAGCACCAGTGGAGTTCAAACCACGTCTGTTGTGAGATATCAACTCACTGAAGACACTTGGTGAACGGTTGCTCAACTTCGTGGATTGGTTCAAGTTAGACATTAACACCGTTATATGCCGACTCAGTGGTCTATCGGTTTAACGCTCTGGCGCGAGATTGGTAGGTCCCAGGTTCGAATGTTGCGAGGCGAGGTCGTGGATGTTTAAGATCAATCAATTTCACTACATGTATACCGACATTGTCCACTTAGGGCAAAGATATATACATTTGAATGTAATTCAAGTGTTGAATATCTTTTTTAAAGAAGTTCTGTACTGGCAATACAAATGTGTTCTTAAGATTAACTTTGACCTGTTCTTCAATATCAAGGAACCATATTATCATTCCAACTTATTTCATTGATTAATTTCATCCCGAACGATTGTCTAAAGATATTTATGCATTTTTGCCATAACTACAATTTTCAACAAATTTTATGTCAAATGACATATTTTCATGTTTACATATTCTGATATTACAAATT] [+] EMBL CD087601 [CCACAGCACCAGTGGAGTTCAAACCACGTCTGTTGTGAGATATCAACTCACTGAAGACACTTGGTGAACGGTTGCTCAACTTCGTGGATTGGTTCAAGTTAGACATTAACACCGTTATATGCCGACTCAGTGGTCTATCGGTTTAACGCTCTGGCGCGAGATTGGTAGGTCCCAGGTTCGAATGTTGCGAGGCGAGGTCGTGGATGTTTAAGATCAATCAATTTCACTACATGTATACCGACATTGTCCACTTAGGGCAAAGATATATACATTTGAATGTAATTCAAGTGTTGAATATCTTTTTTAAAGAAGTTCTGTACTGGCAATACAAATGTGTTCTTAAGATTAACTTTGACCTGTTCTTCAATATCAAGGAACCATATTATCATTCCAACTTATTTCATTGATTAATTTCATCCCGAACGATTGTCTAAAGATATTTATGCATTTTTGCCATAACTACAATTTTCAACAAATTTTATGTCAAATGACATATTTTCATGTTTACATATTCTGATATTACAAATT] consensusID : consensus_8469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [TTTACAAATTAAAGTATCTTCTCATCATTGCTATTATTATTATTAGCTTTATTCAATATTATATTTTTGGTACAATAAAGAATTCTCAGCACAAATTACTTCAACAAGTCTCCGTTTCTTACTTCTTTGTCTTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGCAGCCCAGTCAATCGACATCTGAATAATGTACATTCTTCTCGTTGCATATTGCCAGCAACCACGATATCTCTGATTACGCCTTCTGTGGCCTTTACAGCGAAAGATCTTACACTTTTCAGAAACGCATCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCGCCAATAAATATGAACCATTATGGTTACATTAGTATA] [+] EMBL CD067057 [TTTACAAATTAAAGTATCTTCTCATCATTGCTATTATTATTATTAGCTTTATTCAATATTATATTTTTGGTACAATAAAGAATTCTCAGCACAAATTACTTCAACAAGTCTCCGTTTCTTACTTCTTTGTCTTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGCAGCCCAGTCAATCGACATCTGAATAATGTACATTCTTCTCGTTGCATATTGCCAGCAACCACGATATCTCTGATTACGCCTTCTGTGGCCTTTACAGCGAAAGATCTTACACTTTTCAGAAACGCATCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCGCCAATAAATATGAACCATTATGGTTACATTAGTATA] consensusID : consensus_8469#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [AGGCCTCCCACGATCTACACATTAGAGAGGGAGCTACTGCTTCTACCACTGCTAGAACTTTCGAATGGTCAGGAATATCACCTTATAATCAATCACGCAATCATTCTAATTTTGGTGGTAAGAATTTAGAGGAAATGAACACTAAATTCAGTCCACACACACATGGCAATTCATCAAACAGTTTTGGAAAAAATACTGTTTCAGACTATCTACTTGATCCACC] [+] EMBL CD060964 [AGGCCTCCCACGATCTACACATTAGAGAGGGAGCTACTGCTTCTACCACTGCTAGAACTTTCGAATGGTCAGGAATATCACCTTATAATCAATCACGCAATCATTCTAATTTTGGTGGTAAGAATTTAGAGGAAATGAACACTAAATTCAGTCCACACACACATGGCAATTCATCAAACAGTTTTGGAAAAAATACTGTTTCAGACTATCTACTTGATCCACC] consensusID : consensus_8469#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [AGGTCGATTTTAGGAGGATCCCCAACTGAGGCACAATCTCCTGAGTGCACAGCAAATAATAGGGTGGATCCTACTTCTGATAATTCTGTCCTACTAGTTGCAGACAACCTAGTTCAAGATGTCATCATCTCTGCCACTCAAGGGT] [+] EMBL CD166445 [AGGTCGATTTTAGGAGGATCCCCAACTGAGGCACAATCTCCTGAGTGCACAGCAAATAATAGGGTGGATCCTACTTCTGATAATTCTGTCCTACTAGTTGCAGACAACCTAGTTCAAGATGTCATCATCTCTGCCACTCAAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8469#3 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 TCTGTCCTGCTAGTACGATAACGCGCGCTATTCGAACGGGAAGTTTAGTCCTAACGTGAT 60 consensus_8469#2 ------------------------------------------------------------ consensus_8469#1 ------------------------------------CCACAGCACCAGTGGAGTTCAAAC 24 consensus_8469#3 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 TTACATTTCTCAAACTTTTGCTGTGTTCTTACGCAACAAAAGTATCATATCCAATCCAAA 120 consensus_8469#2 ----------------------------------------------TTTACAAATTAAAG 14 consensus_8469#1 CACGTCTGTTGTGAGATATCAACTCACTGAAGACACTTGGTGAACGGTTGCTCAACTTCG 84 consensus_8469#3 AGGCCTCCCACGATCTACAC-ATTAGAGAGGGAGCTACTGCTTCTACCACTGCTAGAACT 59 consensus_8469#4 ------------AGGTCGAT-TTTAGGAGGATCCCCAACTGAGGCACAATCTCCTGAGTG 47 consensus_8469#0 GAATCTATTCTGAGCTATAC-GTTCG--GGCTGATCATTTGAGAGGACATTCGAAGAAAG 177 consensus_8469#2 TATCTTCTCATCATTGCTATTATTATTATTAGCTTTATTCAATATTATATTTTTGGTACA 74 consensus_8469#1 TGGATTGGTTCAAGTTAGAC-ATTAA---CACCGTTATATGCCGACTCAGTGGTCTATCG 140 * * ** * * consensus_8469#3 TTCGAATGGTCAGGAATATCACC-TTATAATCAATCACGCAATCATTCTAATTTTGGTGG 118 consensus_8469#4 CACAGCAAATAATAGGGTGGATC-CTACTTCTGATAATTCTGTCCTACTAGTTGCAG--- 103 consensus_8469#0 TTCGAAAACCGAGATCAAATCGT-CTACATCTGGTGTTTCGCTTCTCTCACCTAGTGAAT 236 consensus_8469#2 ATAAAGAATTCTCAGCACAAATTACTTCAACAAGTCTCCGTTTCTTACTTCTTTGTCTTT 134 consensus_8469#1 GTTTAACGCTCTGGCGCGAGATTGGTAGGTCCCAGGTTCGAATGTTGCGAGGCGAGGTCG 200 * * * consensus_8469#3 TA--AGAATTTAGAGGAA--ATGAACACTAAATTCAGT---CCACA-CACACATGGCAAT 170 consensus_8469#4 ----ACAACCTAGTTCAA--GATGTCATCATCTCTG-----CCACT-CAAGGGT------ 145 consensus_8469#0 TACTGGAATTCTCTACCA--GAACACGTAATATCAA------CACC-TTCTGTTGATATA 287 consensus_8469#2 CCTGACGATAAATATTGA--GTGGTCGCCAGTTAGAAGTTAGCAGC-CCAGTCAATCGAC 191 consensus_8469#1 TG-GATGTTTAAGATCAATCAATTTCACTACATGTATACCGACATTGTCCACTTAGGGCA 259 * * * * ** consensus_8469#3 TCATCAAACAGTTTTGGAAAAAATACTGTTTCAGACTATCTACTTGATCCACC------- 223 consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 TTCAAGACGAGATTGGACCTACACAGTGTAACAAACTGCAAGGATTAAAATAGGTCAATA 347 consensus_8469#2 ATCTGAATAATGTACATTCTTCTCGTTGCATATTGCCAGCAACCACGATATCTCTGATTA 251 consensus_8469#1 AAGATATATACATTTGAATGTAATTCAAGTGTTGAATATCTTTTTTAAAGAAGTTCTGTA 319 consensus_8469#3 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 --GACCTCCTATCCTTATTACTGAAGACTGAATAATGGTGTAAATGAGTATGGACAGAAT 405 consensus_8469#2 --CGCCTTCTGTGGCCTTTACAGCGAAAGATCTTACACTTTTCAGAAACGCAT-CTGAAT 308 consensus_8469#1 CTGGCAATACAAATGTGTTCTTAAGATTAACTTTGACCTGTTCTTCAATATCAAGGAACC 379 consensus_8469#3 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 ACAAGATTTTGCTTAGTAAGCTTCTGAGTCAAGTAACAGTTGATCACTGGTGCCTTTAAG 465 consensus_8469#2 AGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTT 368 consensus_8469#1 ATATTATCATTCCAACTTATTTCATTGATTAATTTCATCCCGAACGATTGTCTAAAGATA 439 consensus_8469#3 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 TCAGGACCTGGGTATGTTTGACAAGCAGAAAGTAAATGTTAGCAAATTACAATGAAATAA 525 consensus_8469#2 GAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCGCCAATAAATAT 428 consensus_8469#1 TTTATGCATTTTTGCCATAACTACAATTTTCAACAAATTTTATGTCAAATGACATATTTT 499 consensus_8469#3 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 TGTCCCAAGTCCTTGAGAATATATCAGCTTTTCTCTTTTACCCGTTCCTCACCAACGATG 585 consensus_8469#2 GAACCATTATGGTTACATTAGTATA----------------------------------- 453 consensus_8469#1 CATGTTTACATATTCTGATATTACAAATT------------------------------- 528 consensus_8469#3 ------------------------------------------------------------ consensus_8469#4 ------------------------------------------------------------ consensus_8469#0 CAAATCCCCCAAAGTACACGAAGCCTCTTAAAGGACTCTTGAAGAGTCTCAGTTGACATT 645 consensus_8469#2 ------------------------------------------------------------ consensus_8469#1 ------------------------------------------------------------ consensus_8469#3 --------- consensus_8469#4 --------- consensus_8469#0 CAATTCCAG 654 consensus_8469#2 --------- consensus_8469#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||