These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 700 fasta sequence [TTGACAGGTTTGTTGGCGCCTGCAGGTTTGATTGCTCGGGCGATGAAGTCGACGTCCTCGAGACCAGGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTGGTAGATGTTGGTGTGGGAAAGGTTGTCTAAGGTTGGAATCCTGTCGTTGGTACGGGTGATTCATCGCGAGGGTTGGCCAGGCAGCAAGGTTGATAACAGAGGAGCACGGGTATACTAGTACGACTCACTATACCATGAGACGGGACTGAACATAGAATGCTGACGGCGCGCACGCGGCGAGAGGGAATTCGATCCTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCGAGTTGTTGTCCGACATGACAGAGAGACGAGGTGTTGACGTTGTCACAGGCTGTGAACAGTGGTCTTATATCGGGTGAGCAGTCGTTGGTTCGCGATCCTAGTTCCGGACGTCTCGAGAGTCTTGGTAGAATGATGTTGACAGGTTTGTTGGCGCCTGCAGGTTTGATTGCTCGGCGATGAAGTCGACGTCCTCGAGACCA] [-] EMBL CD071881 [TTGACAGGTTTGTTGGCGCCTGCAGGTTTGATTGCTCGGGCGATGAAGTCGACGTCCTCGAGACCAGGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTGGTAGATGTTGGTGTGGGAAAGGTTGTCTAAGGTTGGAATCCTGTCGTTGGTACGGGTGATTCATCGCGAGGGTTGGCCAGGCAGCAAGGTTGATAACAGAGGAGCACGGGTATACTAGTACGACTCACTATACCATGAGACGGGACTGAACATAGAATGCTGACGGCGCGCACGCGGCGAGAGGGAATTCGATCCTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAG ] [+] EMBL CD139422 [ CATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGCGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCGAGTTGTTGTCCGACATGACAGAGAGACGAGGTGTTGACGTTGTCACAGGCTGTGAACAGTGGTCTTATATCGGGTGAGCAGTCGTTGGTTCGCGATCCTAGTTCCGGACGTCTCGAGAGTCTTGGTAGAATGATGTTGACAGGTTTGTTGGCGCCTGCAGGTTTGATTGCTCGGCGATGAAGTCGACGTCCTCGAGACCA] consensusID : consensus_8487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 564 fasta sequence [CGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCCGATTACGGTGTATCTGGTGTGGATATGGACGATGTAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTAC] [-] EMBL CD084883 [CGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCCGATTACGGTGTATCTGGTGTGGATATGGACGATGTAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATTCATTGTGTGTGGATGGGATTGGTGCAAGTGTGGTCGACATGAAGAGCGATCAACTGGAGTCGGCGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATT ] [+] EMBL CD148470 [ TGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGCGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTAC] consensusID : consensus_8487#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [CGAAGCACTCGTCGACTGAGAGACCACATCTCCTGGTCTCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAGGGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCGAGTTGTTGTCCGACATGACAGAGAGACGAGGTGTGGACAGTGGTTTGGATTCGGACATGCTGTCGTCAGATGGTGTCAGGTATGGAGAAGTGTCTGTTCTGACTGAGAAGCGTGGACTTCAGTTGTGTGAGGCGATTGACATGGGTCTTGTTGACACAAAGTCTGGACTAGTTCGTGATCCGTCTAGTGGCGAGGTGTTGACGTTGTCACAGGCTGTGAACAGTGGTCTTATATCGGGTGAGCAGTCGTTGGTTCGCGACCCTAGTTCCGGACGTCTCGAGA] [+] EMBL CD065448 [CGAAGCACTCGTCGACTGAGAGACCACATCTCCTGGTCTCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAGGGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCGAGTTGTTGTCCGACATGACAGAGAGACGAGGTGTGGACAGTGGTTTGGATTCGGACATGCTGTCGTCAGATGGTGTCAGGTATGGAGAAGTGTCTGTTCTGACTGAGAAGCGTGGACTTCAGTTGTGTGAGGCGATTGACATGGGTCTTGTTGACACAAAGTCTGGACTAGTTCGTGATCCGTCTAGTGGCGAGGTGTTGACGTTGTCACAGGCTGTGAACAGTGGTCTTATATCGGGTGAGCAGTCGTTGGTTCGCGACCCTAGTTCCGGACGTCTCGAGA] consensusID : consensus_8487#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [GTGGTCTTATATCGGGTGAGCAGTCGTTGGTTCGCGATCCTAGTTCCGGACGTCTCGAGAGTCTTGGTAGAATGATGTTGACAGGTTTGGTTGCTCTGGCGATGAAGTCGACGTCCTCGAGACCAGGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTTGATTCATCGCGCAGTGATGGGACAGGCGCAAGGGTGTTCGACATCGAGCACTATCTACTAAAATGAGCTCACTATTCCATCCAGACGGGACTGATGATAGAATGTGACGACGGCCTTCCACGTCGGTCGAGAGGGGATTCGATCCTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAG] [-] EMBL CD071938 [GTGGTCTTATATCGGGTGAGCAGTCGTTGGTTCGCGATCCTAGTTCCGGACGTCTCGAGAGTCTTGGTAGAATGATGTTGACAGGTTTGGTTGCTCTGGCGATGAAGTCGACGTCCTCGAGACCAGGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTTGATTCATCGCGCAGTGATGGGACAGGCGCAAGGGTGTTCGACATCGAGCACTATCTACTAAAATGAGCTCACTATTCCATCCAGACGGGACTGATGATAGAATGTGACGACGGCCTTCCACGTCGGTCGAGAGGGGATTCGATCCTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAG] consensusID : consensus_8487#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [TGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGGGTGTATCCGAGTTGTTGTCCGGCATTACAGAGAGACGCCGTGTTGACCGTGGTTTGGATTCCGGCCTTGCGGCCGCCGATGGGGTT] [+] EMBL CD138711 [TGGTGTGTCAGTCGACGAGTGCTTCGGAGCCAGTTGTAGATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTACGGGTGATCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGGGTGTATCCGAGTTGTTGTCCGGCATTACAGAGAGACGCCGTGTTGACCGTGGTTTGGATTCCGGCCTTGCGGCCGCCGATGGGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8487#0 ------------------------------------------------------------ consensus_8487#3 ------------GTGGTCTTATATCGGGTGAGCAGTCGTTGGTTCGCGATCCTAGTTC-C 47 consensus_8487#1 ------------------------------------------------------------ consensus_8487#4 ------------------------------------------------------------ consensus_8487#2 CGAAGCACTCGTCGACTGAGAGACCACATCTCCTGGTCTCGTGACGTGACCCCAGTGCAT 60 consensus_8487#0 -------TTGACAGGTTTGTTGG-----CGCCTGCAGGTTTGATTGCTC-GGGCGATGAA 47 consensus_8487#3 GGACGTCTCGAGAGTCTTGGTAGAATGATGTTGACAGGTTTGGTTGCTC-TGGCGATGAA 106 consensus_8487#1 -----CGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCCGATTACGGTGTA 55 consensus_8487#4 ------------------------------------------------------------ consensus_8487#2 AGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTA 120 consensus_8487#0 GTCGACGTCCTCGAGACCA--GGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCA 105 consensus_8487#3 GTCGACGTCCTCGAGACCA--GGAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCA 164 consensus_8487#1 TCTGGTGTGGATATGGACGATGTAGATGTGGTGTGTCAGTCGACGAGTGCTTCGGAGCCA 115 consensus_8487#4 ----------------------------TGGTGTGTCAGTCGACGAGTGCTTCGGAGCCA 32 consensus_8487#2 TCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAGGGAGTGAGGGT 180 ** * * * ** * * *** consensus_8487#0 GTGGTAGATGTTGGTGTGGGAAAGGTTGTCTAA-GGTTGGAATCCTGTCGTTGGTA--CG 162 consensus_8487#3 GTTGTAGATGTTGGTGTGGGAA-GGTTGTCTGA-GGTTGGA--TCTGTCGTTGGTA--CG 218 consensus_8487#1 GTTGTAGATGTTGGTGTGGGAA-GGTTGTCTGA-GGTTGGA--TCTGTCGTTGGTA--CG 169 consensus_8487#4 GTTGTAGATGTTGGTGTGGGAA-GGTTGTCTGA-GGTTGGA--TCTGTCGTTGGTA--CG 86 consensus_8487#2 GTT-TTGTCGTCGA-GCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCG 238 ** * * ** * * * * *** * * * ** ** * ** *** ** consensus_8487#0 GGT-GATTCATCGCGAGG--GTTGGCC-AGGCAGCAAGGTTGATAACAGAGGAGCACGGG 218 consensus_8487#3 GGTTGATTCATCGCGCAGTGATGGGAC-AGGC-GCAAGGGTGTTCGACATCGAGCACTA- 275 consensus_8487#1 GGT-GATTCATTGTGTGTGGATGGGAT-TGGT-GCAAGTGTGGTCGACATGAAGAGCGA- 225 consensus_8487#4 GGT-GATCCATC------------------------------------------------ 97 consensus_8487#2 AGTTGTTGTCCGACATGACAGAGAGACGAGGTGTGGACAGTGGTTTGGATTCGGACATGC 298 ** * * consensus_8487#0 TATACTAGTACGA-CTCACTATACCATG-AGACGGGACTGAACATAGAATGC--TGACGG 274 consensus_8487#3 TCTACTAAAATGAGCTCACTATTCCATCCAGACGGGACTGATGATAGAATGTGACGACGG 335 consensus_8487#1 TCAACTGGAGTCGGCG-ACTCGTCCATC-CGACTTGA-TGATGACAGA-TGTGAGAGTGA 281 consensus_8487#4 -----------------------------CGACTTGA-TGATGACAGA-TGTGAGAGTGA 126 consensus_8487#2 TGTCGTCAGATGGTGTCA----GGTATGGAGAAGTGTCTGTTCTGACTGAGAAGCGTGGA 354 ** * ** * * * consensus_8487#0 CG---CGCACGCGGCGAGAGGGAATTCGATCCTGACGTGACCCCAGTGCATAGAGGCGGT 331 consensus_8487#3 CCTTCCACGTCGGTCGAGAGGGGATTCGATCCTGACGTGACCCCAGTGCATAGAGGCGGT 395 consensus_8487#1 TT----GAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGT 337 consensus_8487#4 TT----GAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGT 182 consensus_8487#2 CTTCAGTTGTGTGAGGCGATTGACATGGGTCTTGTTGACACAAAGTCTGGACTAGTTCGT 414 * * ** * * ** ** * ** ** ** consensus_8487#0 GATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTG 391 consensus_8487#3 GATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTG 455 consensus_8487#1 GATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTG 397 consensus_8487#4 GATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTG 242 consensus_8487#2 GATCCGTCTAGTGGCGAGGTGTTGACGTTGTCACAGGCTGTGAACAGTG-GTCTTATATC 473 *** *** ** * **** * * ** *** ** *** *** * * consensus_8487#0 GATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCG 451 consensus_8487#3 GATATGGACGATGTTGATGTGAAG------------------------------------ 479 consensus_8487#1 GATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCG 457 consensus_8487#4 GATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCG 302 consensus_8487#2 GGGTGAGCAGTCGTTGGTTCGCGACCCTAGTTCCGGACGTCTCGAGA------------- 520 * * * **** * * consensus_8487#0 TCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGTATCCGAGTTGTTGTCC 511 consensus_8487#3 ------------------------------------------------------------ consensus_8487#1 TCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGAGTGCTTCGGAGCCAGTTGTA 517 consensus_8487#4 TCGAGCAGAGATGGTGTTGTGATGGGTGTGGGTTCGACGGGTGTATCCGAGTTGTTGTCC 362 consensus_8487#2 ------------------------------------------------------------ consensus_8487#0 GACATGACAGAGAGACGAGGTGTTGACGTTGTCACAGGCTGTGAACAGTGGTCTTATATC 571 consensus_8487#3 ------------------------------------------------------------ consensus_8487#1 GATGTTGGTGTGGGAAGGTTGTCTGAGGTTGGATCTGTCGTTGGTAC------------- 564 consensus_8487#4 GGCATTACAGAGAGACGCCGTGTTGACCGTGGTTTGGATTCCGGCCTTGCGGCCGCCGAT 422 consensus_8487#2 ------------------------------------------------------------ consensus_8487#0 GGGTGAGCAGTCGTTGGTTCGCGATCCTAGTTCCGGACGTCTCGAGAGTCTTGGTAGAAT 631 consensus_8487#3 ------------------------------------------------------------ consensus_8487#1 ------------------------------------------------------------ consensus_8487#4 GGGGTT------------------------------------------------------ 428 consensus_8487#2 ------------------------------------------------------------ consensus_8487#0 GATGTTGACAGGTTTGTTGGCGCCTGCAGGTTTGATTGCTCGGCGATGAAGTCGACGTCC 691 consensus_8487#3 ------------------------------------------------------------ consensus_8487#1 ------------------------------------------------------------ consensus_8487#4 ------------------------------------------------------------ consensus_8487#2 ------------------------------------------------------------ consensus_8487#0 TCGAGACCA 700 consensus_8487#3 --------- consensus_8487#1 --------- consensus_8487#4 --------- consensus_8487#2 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||