These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence [CAGGAGTTTGCCTCTTTGTTCAGCTAGGGGGTCCTGATAACTGTGGAAGCATGAGGGAATAGTTGATGAGGGAGTAGCCCCTAGTGTCTCATCCGGATCGCAGGCATACGTTGGCGGTGTATGCATTGAGTTCTTATTAGATTCATGGGAGGTCTGTGATTCGGATATGTTTTGTAGTCTAGTCGGGGATGGAAGCGGTGTCAAGATGACAAGGAGTTCTGGGAGTGGATGTGTCGATGCGTTGGGGGTTGTGGCATCAGACAATGGTGGATGTTCGTCTAGGTCTACCGGAAAAATATATCGGGCCTCGGTATTGGGGATGTCTGTGATTGTGTGATTATTCGAAGAGGTAGTAATCGCTGTTGGTGATCTCGACCACTGTAGGTGGAGGAGTCGGCGTTTGACGGCTTCTGCCGTCCTGCGTGTTAGTATGGTGCTGATATGTTGGCATAGGTCATTCTTCGTGGGGAATCTATGGGCTTCATGGTTAGCGATGGATAGTAAAGAAGCATCATCGAATGGTGACCATA-GCGTGACGTCGGCTGCACTGCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCTTCTATCCCATACACACCAACAAATTCAGGCGAAGACTGTCAGCGTAGCAGAAGCCACTGCAACAGTAGGCTCCAACATACACAAGGGAAAAGCAAGATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCATAGCGAAACCCTGGAACAGGTGAAAATGTTCACGTACCTGGTCAGCATCACCGATGAACGTGAAGGATCTGATGCCGATGTAAAGGCAAGGATTGGCAAAGCAAGGACAGCATTCCTACAGTCGAAGAACATATGGAACTCANAACAACTGTCTCTCAACCAATATCAAAGTGAGAATCTTCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGNAATTCAGA] [-] EMBL CD068547 [CAGGAGTTTGCCTCTTTGTTCAGCTAGGGGGTCCTGATAACTGTGGAAGCATGAGGGAATAGTTGATGAGGGAGTAGCCCCTAGTGTCTCATCCGGATCGCAGGCATACGTTGGCGGTGTATGCATTGAGTTCTTATTAGATTCATGGGAGGTCTGTGATTCGGATATGTTTTGTAGTCTAGTCGGGGATGGAAGCGGTGTCAAGATGACAAGGAGTTCTGGGAGTGGATGTGTCGATGCGTTGGGGGTTGTGGCATCAGACAATGGTGGATGTTCGTCTAGGTCTACCGGAAAAATATATCGGGCCTCGGTATTGGGGATGTCTGTGATTGTGTGATTATTCGAAGAGGTAGTAATCGCTGTTGGTGATCTCGACCACTGTAGGTGGAGGAGTCGGCGTTTGACGGCTTCTGCCGTCCTGCGTGTTAGTATGGTGCTGATATGTTGGCATAGGTCATTCTTCGTGGGGAATCTATGGGCTTCATGGTTAGCGATGGATAGTAAAGAAGCATCATCGAATGGTGACCATA GCGTGACGTC ] [+] EMBL CD197655 [ TTCTTCGTGGGGAATCTATGGGCTTCATGGTTAGCGATGGATAGTAAAGAAGCATCATCGAATGGTGACCATATGCGTGACGTCGGCTGCACTGCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCA ] [+] EMBL CD123429 [ AATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCTTCTATCCCATACACACCAACAAATTCAGGCGAAGACTGTCAGCGTAGCAGAAGCCACTGCAACAGTAGGCTCCAACATACACAAGGGAAAAGCAAGATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCATAGCGAAACCCTGGAACAGGTGAAAATGTTCACGTACCTGGTCAGCATCACCGATGAACGTGAAGGATCTGATGCCGATGTAAAGGCAAGGATTGGCAAAGCAAGGACAGCATTCCTACAGTCGAAGAACATATGGAACTCANAACAACTGTCTCTCAACCAATATCAAAGTGAGAATCTTCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGNAATTCAGA] consensusID : consensus_8497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 450 fasta sequence [TATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGTTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCCG] [+] EMBL CD154759 [TATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGTTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCC ] [+] EMBL CD154468 [TATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGTTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCC ] [-] EMBL CD154449 [ ATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGCTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCCG] [-] EMBL CD154705 [ ATGCCTGCCCATTTTTAATCAACATCGTTATCAAATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTTTCTTTGTATATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTACATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCTTCTGTCCATAAAAGTAAGTGTAACTTAATGTATATAGTTAACTCGAGTGCATTACATTCAATCGCATGTATTTCGTAATTATTTTTCGGTGTTAAGCTGGTGATATGCTTGATGCTATTACGAGTTCACCTTATTCGGTAAACAGAACGAAGGTCAAAGACACAGTGACACGATAGGTGTTATAATTGTTTTGCTACTAAACGACCCAGCTATTCCTATTGCTTAGTATTCTTATACAATGACACTCGACAAGACCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8497#0 CAGGAGTTTGCCTCTTTGTTCAGCTAGGGGGTCCTGATAACTGTGGAAGCATGAGGGAAT 60 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 AGTTGATGAGGGAGTAGCCCCTAGTGTCTCATCCGGATCGCAGGCATACGTTGGCGGTGT 120 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 ATGCATTGAGTTCTTATTAGATTCATGGGAGGTCTGTGATTCGGATATGTTTTGTAGTCT 180 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 AGTCGGGGATGGAAGCGGTGTCAAGATGACAAGGAGTTCTGGGAGTGGATGTGTCGATGC 240 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 GTTGGGGGTTGTGGCATCAGACAATGGTGGATGTTCGTCTAGGTCTACCGGAAAAATATA 300 consensus_8497#1 ---------------------------------------TATGCCTGCCC---ATTTTTA 18 ** * ** ** * * ** consensus_8497#0 TCGGGCCTCGGTATTGGGGATGTCTGTGATTGTGTGATTATTCGAAGAGGTAGTAATCGC 360 consensus_8497#1 ATCAACATCGTTATCA--AATGTTTATTTGTACGATACGATTTTTATCATTAGTTTCTTT 76 * *** *** **** * * * * * *** * **** consensus_8497#0 TGTTGGTGATCTCGACCACTGTAGGTGGAGGAGTCGGCGTTTGACGGCTTCTGCCGTCCT 420 consensus_8497#1 TCTTTGTAT-----ATCATTGAATTTTATCTATTTGTATGCCATAGATTCCAAACCTTAC 131 * ** ** * ** ** * * * * * * * * * * consensus_8497#0 GCGTGTTAGTATGGTGCTGATATGTTGGCATAGGTCATTCTTCGTGGGGAATCTATGGGC 480 consensus_8497#1 ATGTGCCCATTATGTAATAAAGGGTTTCCACAGAAATGGTATTTTGAGCGTCATGTGGCT 191 *** * ** * * *** ** ** * ** * * *** consensus_8497#0 TTCATGGTTAGCGATGGATAGTAAAGAAGCATCATCGAATGGTGACCATAGCGTGACGT- 539 consensus_8497#1 TCTGTCCATAAAAGTAAGT-GTAACTTAATGT-ATATAGTTAACTCGAGTGCATTACATT 249 * * ** * * **** * * ** * * * * ** * ** * consensus_8497#0 CGGCTGCACTGCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACC 599 consensus_8497#1 CAATCGCA-TGTATTTCGTAATTATTTTTCGGTGTTAAG--CTGGTGATATGCTTGATGC 306 * *** ** * *** ** ** * * * * ** **** * * consensus_8497#0 TCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTC 659 consensus_8497#1 TATTACGAGTTCACCTTAT---TCGGTAAACAGA-ACGAAGGTCAAAGACACAGTGACAC 362 * ** *** *** * * *** **** * ** * *** * * * ** * consensus_8497#0 ATCAACCAAC-CACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCT 718 consensus_8497#1 GATAGGTGTTATAATTGTTTTGCTACTA--AACGACCCAGCTATTCCTATTGCTTAGTAT 420 * * * * * ** * * ** * * * * **** ** * consensus_8497#0 AGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCTTCTATCCCATACACACCAAC 778 consensus_8497#1 TCTTA-TACAATGACACTCGACAAGAC-CCCG---------------------------- 450 * * **** * * ** * ** ** * ** consensus_8497#0 AAATTCAGGCGAAGACTGTCAGCGTAGCAGAAGCCACTGCAACAGTAGGCTCCAACATAC 838 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 ACAAGGGAAAAGCAAGATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCA 898 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 TAGCGAAACCCTGGAACAGGTGAAAATGTTCACGTACCTGGTCAGCATCACCGATGAACG 958 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 TGAAGGATCTGATGCCGATGTAAAGGCAAGGATTGGCAAAGCAAGGACAGCATTCCTACA 1018 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 GTCGAAGAACATATGGAACTCANAACAACTGTCTCTCAACCAATATCAAAGTGAGAATCT 1078 consensus_8497#1 ------------------------------------------------------------ consensus_8497#0 TCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGNAATTCAGA 1126 consensus_8497#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||