These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 416 fasta sequence [TGTCTGGTTCGAACTTTCTTACGCCCTGTCCTTATTGCCTGTACTCGTTGGCACGTCTCGATATTCTTTCGATACCACGAGATTGCCAGTAAATATACTCTATCTGGACCAGTCACAGTCTTCTGGTTTGCAATTTATCAAAGAGGACGAAGTCGTAAAAGATGGCTCAATTCTGTCAATCAACTTAAAGCAATCCAGCACGAAGCCGGTGGGTCCTGGGTTCGAATCTCACGAGTGCAGGATCGTGGATGCGCACTGCTGAGAAGTCCCACAATAGAACGAAACGGCCGTCCAGTGCTTCCAGGTTCCCCATGGTGGTCTAGCTTCACTTGACTCATGATTTCAGCAATGAAAACATTTGATGTTTGATGAAGATAACTTGTTCTGCATTGAGATTTTAAGCCATTCAAGTCTAA] [+] EMBL CD087219 [TGTCTGGTTCGAACTTTCTTACGCCCTGTCCTTATTGCCTGTACTCGTTGGCACGTCTCGATATTCTTTCGATACCACGAGATTGCCAGTAAATATACTCTATCTGGACCAGTCACAGTCTTCTGGTTTGCAATTTATCAAAGAGGACGAAGTCGTAAAAGATGGCTCAATTCTGTCAATCAACTTAAAGCAATCCAGCACGAAGCCGGTGGGTCCTGGGTTCGAATCTCACGAGTGCAGGATCGTGGATGCGCACTGCTGAGAAGTCCCACAATAGAACGAAACGGCCGTCCAGTGCTTCCAGGTTCCCCATGGTGGTCTAGCTTCACTTGACTCATGATTTCAGCAATGAAAACATTTGATGTTTGATGAAGATAACTTGTTCTGCATTGAGATTTTAAGCCATTCAAGTCTAA] [+] EMBL CD087255 [TGTCTGGTTCGAACTTTCTTACGCCCTGTCCTTATTGCCTGTACTCGTTGGCACGTCTCGATATTCTTTCGATACCACGAGATTGCCAGTAAATATACTCTATCTGGACCAGTCACAGTCTTCTGGTTTGCAATTTATCAAAGAGGACGAAGTCGTAAAAGATGGCTCAATTCTGTCAATCAACTTAAAGCAATCCAGCACGAAGCCGGTGGGTCCTGGGCTCGAATCT ] consensusID : consensus_8498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [CGATGGATGGGGGGTCCAGTAGATCTGGTCTATTCAAGAGTTGCACCCATGTGTTCCTCTGTCCTTGAATTTCAATGATTGGCTTGCCTTCTTTGCCCTTGACCGGTCTCTCTGGTTTACTATATTTCCCTGTCAGTTTCTTCATCGTGTCATATAGTTGTTTCATATTTCCTTCTCTTGCAGCTTTTTCCGCTGTCGTTGCTAACTCCTTCACGTATTTCTGCTCGTCGAATCGAATGCTCCTCTTCACTTGCTTGTTTCCTTCAGTGTATTCAACCTGTCTCTTGACTTTTTCTGTTCTTGTTCAGCTATTGTTAATTGATGTCTTCTTGTTCTTCTTTTCTTGAATCTTATTCGGGGTTTCGATAGATATCCATCTCTTATGATGATGCTTCTTGCGGCTTACA] [+] EMBL BG931394 [CGATGGATGGGGGGTCCAGTAGATCTGGTCTATTCAAGAGTTGCACCCATGTGTTCCTCTGTCCTTGAATTTCAATGATTGGCTTGCCTTCTTTGCCCTTGACCGGTCTCTCTGGTTTACTATATTTCCCTGTCAGTTTCTTCATCGTGTCATATAGTTGTTTCATATTTCCTTCTCTTGCAGCTTTTTCCGCTGTCGTTGCTAACTCCTTCACGTATTTCTGCTCGTCGAATCGAATGCTCCTCTTCACTTGCTTGTTTCCTTCAGTGTATTCAACCTGTCTCTTGACTTTTTCTGTTCTTGTTCAGCTATTGTTAATTGATGTCTTCTTGTTCTTCTTTTCTTGAATCTTATTCGGGGTTTCGATAGATATCCATCTCTTATGATGATGCTTCTTGCGGCTTACA] consensusID : consensus_8498#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 312 fasta sequence [TAAATGTACGACGTCAGAGTTTGCTTTCAAGAAAGGAACGACGATCCTGAGTGTTTGTCACGCATTCAGACAGCACCAACACCTTTGACCTACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCAACAGCAACCACAAATTCTTCATT] [-] EMBL CD153080 [TAAATGTACGACGTCAGAGTTTGCTTTCAAGAAAGGAACGACGATCCTGAGTGTTTGTCACGCATTCAGACAGCACCAACACCTTTGACCTACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGC ] [+] EMBL CD164917 [ GACCTACCACATTTGTTTTATTCGACGATTACCTACATAACCTGGACGATTCTTCTTGACACCTGGCTTCTTTGCTGATTTATGGATCATGTTGACACCTGGCTTCATTGCTGATTTATGGATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGACTGCGAATACAGCTATGACGGCCAACAGCAACCACAAATTCTTCATT] consensusID : consensus_8498#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [TGACACGATGAAGAAACTGACAGGGAAATATAGTAAACCAGAGAGACCGGTCAAGGACAAAGAAGGCAGGCCAATCACTGAAATTTAAGGATAGAGGAACACATGGGTGGGTTTCTTGAATAGACCAGATCTACTGAACCCACCAGACATTGTAGCAGCACCTACAGACCTTCCTATATATGTCACTCCACCAACGATCGAATAAATCAGGATGGCCACCAGACAAATCAAGAATGGGAAAGTAGTAATACCTGAAAATACGCCAGCTGAAGCATT] [+] EMBL CD066967 [TGACACGATGAAGAAACTGACAGGGAAATATAGTAAACCAGAGAGACCGGTCAAGGACAAAGAAGGCAGGCCAATCACTGAAATTTAAGGATAGAGGAACACATGGGTGGGTTTCTTGAATAGACCAGATCTACTGAACCCACCAGACATTGTAGCAGCACCTACAGACCTTCCTATATATGTCACTCCACCAACGATCGAATAAATCAGGATGGCCACCAGACAAATCAAGAATGGGAAAGTAGTAATACCTGAAAATACGCCAGCTGAAGCATT] consensusID : consensus_8498#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [GAGAAAGGAACGACGATCCTGAGTGTTTGTCACGCATTCAGACAGCACCAACACCTTTGACCCACGGTACTCGTCGTATTCGACGATTACCTACAAAACTTGGACGATTCTTCTTGACAGGTGGCTTCTTTGCTGATTTATGGATCATGTTGACTCCTGGCTGGGTTGCTGATTTATGGATCATGTTGA] [+] EMBL CD152743 [GAGAAAGGAACGACGATCCTGAGTGTTTGTCACGCATTCAGACAGCACCAACACCTTTGACCCACGGTACTCGTCGTATTCGACGATTACCTACAAAACTTGGACGATTCTTCTTGACAGGTGGCTTCTTTGCTGATTTATGGATCATGTTGACTCCTGGCTGGGTTGCTGATTTATGGATCATGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8498#2 ----------TAAATGTACGACGTCAGAGTTTGCTTTCAAGAAAGGAACGACGATCCTGA 50 consensus_8498#4 --------------------------------------GAGAAAGGAACGACGATCCTGA 22 consensus_8498#0 TGTCTGGTTCGAACTTTCTTACGCCCTGTCCTTATTGCCTGTACTCGTTGGCACGTCTCG 60 consensus_8498#3 ------------------TGACACGATGAAGAAACTGACAGGGAAATATAGTAAACCAGA 42 consensus_8498#1 ---------CGATGGATGGGGGGTCCAGTAGATCTGGTCTATTCAAGA-GTTGCACCCAT 50 * consensus_8498#2 GTGTTTG-TCACGCATTCAGACAGCA--CCAACACCTTTGACCTA-CCACATTTGTTTTA 106 consensus_8498#4 GTGTTTG-TCACGCATTCAGACAGCA--CCAACACCTTTGACCCA-CGGTACTCGTCGTA 78 consensus_8498#0 ATATTCT-TTCGATACCACGAGATTG--CCAGTAAATATACTCTATCTGGACCAGTCACA 117 consensus_8498#3 GAGACCGGTCAAGGACAAAGAAGGCAGGCCAATCACTGAAATTTAAGGATAGAGGAACAC 102 consensus_8498#1 GTGTTCC--TCTGTCCTTGAATTTCA--ATGATTGGCTTGCCTTCTTTGCCCTTGACCGG 106 * * consensus_8498#2 TTCGAC-GATTACCTACATAACCTGGAC---GATTCT-TCTTGACACCTGGCTT------ 155 consensus_8498#4 TTCGAC-GATTACCTACAAAACTTGGAC---GATTCT-TCTTGACAGGTGGCTT------ 127 consensus_8498#0 GTCTTCTGGTTTGCAATTTATCAAAGAG---GACGAAGTCGTAAAAGATGGCTCAA---- 170 consensus_8498#3 ATGGGTGGGTTTCTTGAATAGACCAGATC-TACTGAACCCACCAGACATTGTAGCAGC-- 159 consensus_8498#1 TCTCTCTGGTTTACTATATTTCCCTGTCAGTTTCTTCATCGTGTCATATAGTTGTTTCAT 166 * ** * * * * * consensus_8498#2 CTTTGCTGATTT----A--TGGATCATGTTGACACCTGGC---TTCATTGCTGATTTATG 206 consensus_8498#4 CTTTGCTGATTT----A--TGGATCATGTTGACTCCTGGC---TGGGTTGCTGATTTATG 178 consensus_8498#0 TTCTGTCAATCA----ACTTAAAGCAATCCAGCACGAAGCCGGTGGGTCCTGGGTTCGAA 226 consensus_8498#3 ACCTACAGACCTTCCTATATATGTCACTCCACCAACGATCGAATAAATCA-GGATGGCCA 218 consensus_8498#1 ATTTCCTTCTCTTGCAGCTTTTTCCGCTGTCGTTGCTAAC---TCCTTCACGTATTTCTG 223 * * * * * * * consensus_8498#2 GATCATGTTGACACCTCGCTTCATTGCTAATTTATGTTGATTGTCAGATTGAACGAAGAC 266 consensus_8498#4 GATCATGTTGA------------------------------------------------- 189 consensus_8498#0 TCTCACGAGTGCAGGATCGTGGATGCGCACTGCTGAGAAGTCCCACAATAGAACGAAACG 286 consensus_8498#3 CCAGACAAATCAAGAATGGGAAAGTAGTAATACCTGAAAATACGCCAGCTGAAGCATT-- 276 consensus_8498#1 CTCGTCGAATCGAATGCTCCTCTTCACTTGCTTGTTTCCTTCAGTGTATTCAACCTGTCT 283 consensus_8498#2 TGCGAATACAGCTATGACGGCCAACAGCAACCACAAATTCTTCATT-------------- 312 consensus_8498#4 ------------------------------------------------------------ consensus_8498#0 GCCGTCCAGTGCTTCCAGGTTCCCCATGGTGGTCTAGCTTCACTTGACTCATGATTTCAG 346 consensus_8498#3 ------------------------------------------------------------ consensus_8498#1 CTTGACTTTTTCTGTTCTTGTTCA-GCTATTGTTAATTGATGTCTTCTTGTTCTTCTTTT 342 consensus_8498#2 ------------------------------------------------------------ consensus_8498#4 ------------------------------------------------------------ consensus_8498#0 CAATGAAAACATTTGATGTTTGATGAAGATAACTTGTTCTGCATTGAGATTTTAAGCCAT 406 consensus_8498#3 ------------------------------------------------------------ consensus_8498#1 CTTGAATCTTATTCGGGGTTTCGATAGATATCCATCTCTTATGATGATGCTTCTTGCGGC 402 consensus_8498#2 ---------- consensus_8498#4 ---------- consensus_8498#0 TCAAGTCTAA 416 consensus_8498#3 ---------- consensus_8498#1 TTACA----- 407 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||