cluster # 8499

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Schistosoma mansoni
cluster # 8499 cluster # 8499 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8499#0 length = 973 sequences # 5

consensus_8499#1 length = 625 sequences # 1
consensus_8499#2 length = 204 sequences # 1

consensusID : consensus_8499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 973
fasta sequence

                              [CCANAAACATAATCTTAATCATCAACAAGCTGAGATGTTGCATGAAGAAGACAAACTACATTGACACCAACAATCAACGAAAGAAGGTATAGCACAAACACATGAATCAACTAAATAAGAGGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAAT-CAGGAGAATCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGTGCGTTTCGAGACAATCTCATGCTGACTGGATTCCACGATGTGTGTGGTGACGGAGGTCGCCTGTGTGGCAGTCTCAGTCAGATGACGAGGTGGTGGCTGTTGGACAGGCGACTCTGCGTAGGAGGCACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTTCCACTGCTTCCGTCACTGTGTGGCTGCTGGTCTGTTGCACCTGGTAGCCGGAGCTCATGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCT]

[+] EMBL CD128989             [CCANAAACATAATCTTAATCATCAACAAGCTGAGATGTTGCATGAAGAAGACAAACTACATTGACACCAACAATCAACGAAAGAAGGTATAGCACAAACACATGAATCAACTAAATAAGAGGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAAT CAGGAGAATCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAAAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGTGCGTTTCGAGACAATCTCATGCTGACTGG                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD128777             [   NAAAC TAAAC CAA NATCAACAAGCTGAGA GTTG ATGAAGAAGACAAACTACATTGACACCAACAATCAACGAAAGAAGGTATAGCACAAACACATGAATCAACTAAATAAGAGGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAAT CAGGAGAATCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATG                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD061727             [                                                                                                                     AGAGGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAAT CAGGAGAATCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTAGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGCGGAGCTTTGACTTGAACGGTGCGTCTCGAGACAATCTC                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD062403             [                                                                                                                                                       tatGGATAATCCCTGAGAGTCAAGCACACTTTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCACCGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGACGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGGCTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGACAGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGTGCGTTTCGAGACAATCTC                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD194870             [                                                                                                                                                                                                                                                                                                                                                                                                                                         GTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATNTGTTGGTCGACAGTGAAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTTAGGTGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGTGCGTTTCGAGACAATCTCATGCTGACTGGATTCCACGATGTGTGTGGTGACGGAGGTCGCCTGTGTGGCAGTCTCAGTCAGATGACGAGGTGGTGGCTGTTGGACAGGCGACTCTGCGTAGGAGGCACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTTCCACTGCTTCCGTCACTGTGTGGCTGCTGGTCTGTTGCACCTGGTAGCCGGAGCTCATGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCT]




>consensus_8499#0
CCANAAACATAATCTTAATCATCAACAAGCTGAGATGTTGCATGAAGAAGACAAACTACA
TTGACACCAACAATCAACGAAAGAAGGTATAGCACAAACACATGAATCAACTAAATAAGA
GGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAATCAGGAGAATCAAGCACACT
TTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCAC
CGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAAC
TGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGA
CGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGG
CTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGAC
AGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGG
TGTCGGTAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGTGCG
TTTCGAGACAATCTCATGCTGACTGGATTCCACGATGTGTGTGGTGACGGAGGTCGCCTG
TGTGGCAGTCTCAGTCAGATGACGAGGTGGTGGCTGTTGGACAGGCGACTCTGCGTAGGA
GGCACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACT
GGTCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTTCCACTGC
TTCCGTCACTGTGTGGCTGCTGGTCTGTTGCACCTGGTAGCCGGAGCTCATGACATCATA
TGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCG
GTTTGAGTCACCT

consensusID : consensus_8499#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [ACAGGAGGAGTGAAATTGATGCCCCATGTCCACTAATTTAACTTTAAACCAACTTTGATTCTCTGAGGATGAGGGAGTTAAAGTACTCAATTGATCATAAAGGTTTTCAAATTGGGCGCTGATTGTCAATTCATAAATTATATATCAGAGGAGGTTTTGTGGAGAATTTATTATTTTCACAGTCGAAATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGACGGCCGTTTACTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGAATCCGCTCTCGCGAGCGAGATTCGAACCCAGGACCTACCAGTCCTGAGCCGAAGCCCTTAATCGACAGACCACTGAGCTGGCATCCAACGGTGTTAATGTCTAACTTCAACCAATCCACGATTTTGAGCGACCGTTCACCAATTGTCTTCAGTGACTTGAAACGTTTTAAAATATAATATTTAACAAACCATAAGAAATTATGCTCTAACTACAAAAGCTTGAAAAAACCGCGTTAAGCATCGTATACTTACTTACTTACGCTTGTTACCCCTCGTGTAGAAGTATAGGTCACTTATCAAGACACTCTGTCGAACTCTATCCTGGGCAATCCTTTCCAG]

[+] EMBL CD086206             [ACAGGAGGAGTGAAATTGATGCCCCATGTCCACTAATTTAACTTTAAACCAACTTTGATTCTCTGAGGATGAGGGAGTTAAAGTACTCAATTGATCATAAAGGTTTTCAAATTGGGCGCTGATTGTCAATTCATAAATTATATATCAGAGGAGGTTTTGTGGAGAATTTATTATTTTCACAGTCGAAATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGACGGCCGTTTACTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGAATCCGCTCTCGCGAGCGAGATTCGAACCCAGGACCTACCAGTCCTGAGCCGAAGCCCTTAATCGACAGACCACTGAGCTGGCATCCAACGGTGTTAATGTCTAACTTCAACCAATCCACGATTTTGAGCGACCGTTCACCAATTGTCTTCAGTGACTTGAAACGTTTTAAAATATAATATTTAACAAACCATAAGAAATTATGCTCTAACTACAAAAGCTTGAAAAAACCGCGTTAAGCATCGTATACTTACTTACTTACGCTTGTTACCCCTCGTGTAGAAGTATAGGTCACTTATCAAGACACTCTGTCGAACTCTATCCTGGGCAATCCTTTCCAG]




>consensus_8499#1
ACAGGAGGAGTGAAATTGATGCCCCATGTCCACTAATTTAACTTTAAACCAACTTTGATT
CTCTGAGGATGAGGGAGTTAAAGTACTCAATTGATCATAAAGGTTTTCAAATTGGGCGCT
GATTGTCAATTCATAAATTATATATCAGAGGAGGTTTTGTGGAGAATTTATTATTTTCAC
AGTCGAAATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGACG
GCCGTTTACTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGAATCCGCTCTCGCGA
GCGAGATTCGAACCCAGGACCTACCAGTCCTGAGCCGAAGCCCTTAATCGACAGACCACT
GAGCTGGCATCCAACGGTGTTAATGTCTAACTTCAACCAATCCACGATTTTGAGCGACCG
TTCACCAATTGTCTTCAGTGACTTGAAACGTTTTAAAATATAATATTTAACAAACCATAA
GAAATTATGCTCTAACTACAAAAGCTTGAAAAAACCGCGTTAAGCATCGTATACTTACTT
ACTTACGCTTGTTACCCCTCGTGTAGAAGTATAGGTCACTTATCAAGACACTCTGTCGAA
CTCTATCCTGGGCAATCCTTTCCAG

consensusID : consensus_8499#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [CACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTCCCACTGCCTCCTACGCGGAGTCGCCTGTCCAACAGCCACCACCTCGTCATCTGACTGAGACTGCCACACAGGCGACCTCCGTCACCACACACA]

[+] EMBL CD187556             [CACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTCCCACTGCCTCCTACGCGGAGTCGCCTGTCCAACAGCCACCACCTCGTCATCTGACTGAGACTGCCACACAGGCGACCTCCGTCACCACACACA]




>consensus_8499#2
CACTCACTGACATCATATGATCAGGTTTCACTGTCTTCAACTCTCTGTGATCCTCACTGG
TCACAACTGGTCGTTCGGTTTGAGTCACCTGTACTTCTCGTTCTGCTACTCCCACTGCCT
CCTACGCGGAGTCGCCTGTCCAACAGCCACCACCTCGTCATCTGACTGAGACTGCCACAC
AGGCGACCTCCGTCACCACACACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8499#0      CCANAAACATAATCTTAATCATCAACAAGCTGAGATGTTGCATGAAGAAGACAAACTACA 60
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      ------------------------------------------------------------
                                                                                  

consensus_8499#0      TTGACACCAACAATCAACGAAAGAAGGTATAGCACAAACACATGAATCAACTAAATAAGA 120
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      ------------------------------------------------------------
                                                                                  

consensus_8499#0      GGGAATGAAATGCACATTATCCCTCAACAATAAAGGATAATCAGGAGAATCAAGCACACT 180
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      ------------------------------------------------------------
                                                                                  

consensus_8499#0      TTCGGGCGACTTCACTGACACACTGGTCGCACTATCCACAACACACACACTTTCCTTCAC 240
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      ------------------------------------------------------------
                                                                                  

consensus_8499#0      CGTCTGCACACAGGCTTCCAATGTTTGGATGGGTTTCGGTGGCTGCTGGACTGGAACAAC 300
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      ------------------------------------------------------------
                                                                                  

consensus_8499#0      TGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGGTTTGGCTTGTGA 360
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      ----------------------------------------------------ACAGGAGG 8
                                                                                  

consensus_8499#0      CGTCGCATCGGTGCGTTTCAACGACAAATGGGCAGCACCGTCGAGTAGAGATTTGTGTGG 420
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      AGTGAAATTGATGCCCCATGTCCACTAATTTAACTTTAAACCAACTTTGATTCTCTGAGG 68
                                                                                  

consensus_8499#0      CTCGGTCTGTGCACCCACGTCGGACGAGGAGACTGGTACTGTGTCGATTTGTTGGTCGAC 480
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      ATGAGGGAGTTAAAGTAC-TCAATTGATCATAAAGGTTTTCAAATTGGGCGCTGATTGTC 127
                                                                                  

consensus_8499#0      AGTGGAACGTTTCACGAACTGTGTGGCTTCCACTAGAGATGTTTTGCGAACAGGTTCAGG 540
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      AATTCATAAATTATATATCAGAGGAGGTTTTGTGGAGAATTTATTATTTTCACAGTCGAA 187
                                                                                  

consensus_8499#0      TGTCGG---TAACTCTAATGAGGCGGTCTCGGTGATGAGAGGAGCTTTGACTTGAACGGT 597
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      ATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGACGGCCGTTT 247
                                                                                  

consensus_8499#0      GCGTTTCGAGACAATCTCATGCTGACTGGATTCCACGATGTGTGTGGTGACGGAGGTCGC 657
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      ACTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGAATCCGCTCTCGCGAGCGAGAT 307
                                                                                  

consensus_8499#0      CTGTGTGGCAGTCTCAGTCAGATGACGAGGTGGTGGCTGTTGGACAGGCGACTCTGCGTA 717
consensus_8499#2      ------------------------------------------------------------
consensus_8499#1      TCGAACCCAGGACCTACCAGTCCTGAGCCGAAGCCCTTAATCGACAGACCACTGAGCT-- 365
                                                                                  

consensus_8499#0      GGAGGCACTCACTGACATCATATGATCAGGTTTCACTG-TCTTCAACTCTCTGTGATC-C 775
consensus_8499#2      -----CACTCACTGACATCATATGATCAGGTTTCACTG-TCTTCAACTCTCTGTGATC-C 53
consensus_8499#1      ---GGCATCCAACGGTGTTA-ATGTCTAACTTCAACCAATCCACGATTTTGAGCGACCGT 421
                           **  **  *   * * ***   *  **  **   **  * * * *  * ** *  

consensus_8499#0      TCACTGGTCACAACTGGTCGTTCG----GTTTGAGTCACCTGTACTTCTCGTTCTGC--- 828
consensus_8499#2      TCACTGGTCACAACTGGTCGTTCG----GTTTGAGTCACCTGTACTTCTCGTTCTGC--- 106
consensus_8499#1      TCACCAATTGTCTTCAGTGACTTGAAACGTTTTAAAATATAATATTTAACAAACCATAAG 481
                      ****   *        **   * *    **** *        ** **  *   *      

consensus_8499#0      ------TACTTCCACTGCTTCCGTCACTGTGTGGC-TGCTGGTCTGTTGC-ACCTGGTAG 880
consensus_8499#2      ------TACTCCCACTGCCTCCTACGCGGAGTCGCCTGTCCAACAGCCACCACCTCGTCA 160
consensus_8499#1      AAATTATGCTCTAACTACAAAAGCTTGAAAAAACCGCGTTAAGCATCGTATACTTACTTA 541
                            * **   *** *                *  *     *       ** *  *  

consensus_8499#0      CCGGAGCTCATGACATCATATG-ATCAGGTTTCACTGTC-TTCAACTCTCTGTGATCCTC 938
consensus_8499#2      TCTGA-CTGAGACTGCCACACA-GGCGACCTCCGTCACC-ACACACA------------- 204
consensus_8499#1      CTTACGCTTGTTACCCCTCGTGTAGAAGTATAGGTCACTTATCAAGACACTCTGTCGAAC 601
                            **        *             *             *               

consensus_8499#0      ACTGGTCACAACTGGTCGTTCGGTTTGAGTCACCT 973
consensus_8499#2      -----------------------------------
consensus_8499#1      TCTATCCTGGGCAATCCTTTCCAG----------- 625