These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 734 fasta sequence [ATTAAATTATGAAAACCATATATTAAATACATTATTGGCACATCTTCGTTCAGTTGTTCATTACATGCTGGATAATCCTTTCAATTGTGTGGTGATAACACGGGCTCTCTGTTTCTCTTTCTGTTCTCTTCATGGTAACCAAGGTTTGACTGGGTAATTTCAAATAAATTAAGCATGGGGCAGATTGTTATTAGTGAAAATACAATATTTGTAGTATTCCAAGGTGTAGAAAAATTAATTTTTCTGATATTTCGTGACTCAATGTAGGCCAATTCTTCAGAGAATAGATAAACAAATTGAATTAGCCTTCTTCGTCCTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGCAGCCAAGTCAATCGACATCTGGATAATGTACATTCTTCTCGCTGCATATTGCCAGCAACCACGATATCTCTGATTAGGCCTTCTGTAACATCTACAGCGAAAGGTCTTACACTTTTCAGAAACGCACCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCACCAATGATGACCTTGTGTCCGTGATAAACCAATAAGGCATCAAGCAACACTATCAGGCTTGAGTTGACCATGAACCCTTATTGATTCTCGATGTAGTTGCTGATCACCTAGCCTATCCCATTTAGTCCAGAA] [-] EMBL CD152842 [ATTAAATTATGAAAACCATATATTAAATACATTATTGGCACATCTTCGTTCAGTTGTTCATTACATGCTGGATAATCCTTTCAATTGTGTGGTGATAACACGGGCTCTCTGTTTCTCTTTCTGTTCTCTTCATGGTAACCAAGGTTTGACTGGGTAATTTCAAATAAATTAAGCATGGGGCAGATTGTTATTAGTGAAAATACAATATTTGTAGTATTCCAAGGTGTAGAAAAATTAATTTTTCTGATATTTCGTGACTCAATGTAGGCCAATTCTTCAGAGAATAGATAAACAAATTGAATTAGCCTTCTTCGTCCTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGCAGCCAAGTCAATCGACATCTGGATAATGTACATTCTTCTCGCTGCATATTGCCAGCAACCACGATATCTCTGATTAGGCCTTCTGTAACATCTACAGCGAAAGGTCTTACACTTTTCAGAAACGCACCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCACCA ] [+] EMBL CD093221 [ AAAACAAACGAAATTAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGCCACCAATGATGACCTTGTGTCCGTGATAAACCAATAAGGCATCAAGCAACACTATCAGGCTTGAGTTGACCATGAACCCTTATTGATTCTCGATGTAGTTGCTGATCACCTAGCCTATCCCATTTAGTCCAGAA] consensusID : consensus_8505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [GGATATAGTATAGGAATGAAGAACGTTATGAAGCAATTTAATCTCAAGGTTTAAGGGAAGACAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTAGAGTCTCCAACCATTGGTTACGATAGTCACGTGGACCCCAACCAGGTAGTCTGCATCTGTCAACATGGCTCAGACTGGAAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTTTTCCAACCATCCCCTACACTAGTCAGCATAGCGCGTCGTGGTAATCGGTGTTCAGGCATACGTAACACATGGCCTAACCATCTCAGTCGATGAAGATTCATGGCCTCATCAACTGATTTACCATCACTTCCTAATACCCTGTCTAACCTCACTATTACTTAACAAAGTTACCTAAATAATGATATATATATATACCTAAGTAATAGTTGTGTTTTAGATAATGGTTGAGTTTCAGGTATGTTTTTCCAACGTATTCTACTGAGAAGTAGAGACCTGTGCAGCCTGATCAAATCAAGCATGAATGGAATAGTTTTCACTGATAATTATGATTATACTGAGAATGAACTGAAATTGANAATATTGATGACCATTTGATTGAGTTTAATTTAGTANACTAAAAAGTATGTG] [+] EMBL CD117276 [GGATATAGTATAGGAATGAAGAACGTTATGAAGCAATTTAATCTCAAGGTTTAAGGGAAGACAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTAGAGTCTCCAACCATTGGTTACGATAGTCACGTGGACCCCAACCAGGTAGTCTGCATCTGTCAACATGGCTCAGACTGGAAGTTAGTGACTTCAAGCACTGATGCCACGTTTTGGTTTGGCCGCCCCTAACTCTTTTCCAACCATCCCCTACACTAGTCAGCATAGCGCGTCGTGGTAATCGGTGTTCAGGCATACGTAACACATGGCCTAACCATCTCAGTCGATGAAGATTCATGGCCTCATCAACTGATTTACCATCACTTCCTAATACCCTGTCTAACCTCACTATTACTTAACAAAGTTACCTAAATAATGATATATATATATACCTAAGTAATAGTTGTGTTTTAGATAATGGTTGAGTTTCAGGTATGTTTTTCCAACGTATTCTACTGAGAAGTAGAGACCTGTGCAGCCTGATCAAATCAAGCATGAATGGAATAGTTTTCACTGATAATTATGATTATACTGAGAATGAACTGAAATTGANAATATTGATGACCATTTGATTGAGTTTAATTTAGTANACTAAAAAGTATGTG] consensusID : consensus_8505#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 572 fasta sequence [AGTCACATTGTTATGTAACAGTTGGTTGACTTAAGATTACATAATTAGTGACCTAAAAGTTTCCATTAGTTACCATCACGTAATTAGGTGGAATGTCAGTTGTGTGGCATGCTGCTACTCAATACCAATCAACAGATCTTTGAAAAACCTGAAACGCAAGGAAACTTGATTAGACGTGTGTAATCGTCATAGATAAAAAACCAGAGAAGTACTATTTATCTCGACAAGTCTGAAAGCTGAGTAAATAAATCTGTAACCGGTAAATCAGTTAGATTTGTATGACGTGGAAGGGTACCACAGAATTTCGAACTATCAGTCAGTCAGCGACAACGTAGAACCAGGCACATATATGCATCGGTTCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGTGGTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGAAGCAATTTTAATCTCACCATTTAAGAGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCT] [+] EMBL CD094529 [AGTCACATTGTTATGTAACAGTTGGTTGACTTAAGATTACATAATTAGTGACCTAAAAGTTTCCATTAGTCACCATCACGTAATTAGGTGGAATGTCAGTTGTGTGGCATGCTGCTACTCAATACCAATCAACAGATCTTTGAAAAACCTGAAACGCAAGGAAACTTGATTAGACGTGTGTAATCGTCATAGATAAAAAACCAGAGAAGTACTATTTATCTCGACAAGTCTGAAAGCTGAGTAAATATATCTGTAACCGGTAAATCAGTTAGATTTGTATGACGCGGAAGGGTACCACAGAATTTCGAACTATCAGTCAGTCAGCGACAACGTAGAACCAGGCACATATATGCATCGGTTCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGTGGTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGAAGCAATTTTAATCTCACCATTTAAGAGAAGATAAAGAGTGTATACACCTACGCCATTGTAATCGATTCTGAGCCATGTCACC ] [-] EMBL CD095381 [ TGTTATGTAACAGTTGGTTGACTTAAGATTACATAATTAGTGACCTAAAAGTTTCCATTAGTTACCATCACGTAATTAGGTGGAATGTCAGTTGTGTGGCATGCTGCTACTCAATACCAATCAACAGATCTTTGAAAAACCTGAAACGCAAGGAAACTTGATTAGACGTGTGTAATCGTCATAGATAAAAAACCAGAGAAGTACTATTTATCTCGACAAGTCTGAAAGCTGAGTAAATAAATCTGTAACCGGTAAATCAGTTAGATTTGTATGACGTGGAAGGGTACCACAGAATTTCGAACTATCAGTCAGTCAGCGACAACGTAGAACCAGGCACATATATGCATCGGTTCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGTGGTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGAAGCAATTTTAATCTCACCATTTAAGAGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCT] [-] EMBL CD095200 [ CCTAAAAGTTTCCATTAGTTACCATCACGTAATTAGGTGGAATGTCAGTTGTGTGGCATGCTGCTACTCAATACCAATCAACAGATCTTTGAAAAACCTGAAACGCAAGGAAACTTGATTAGACGTGTGTAATCGTCATAGATAAAAAACCAGAGAAGTACTATTTATCTCGACAAGTCTGAAAGCTGAGTAAATAAATCTGTAACCGGTAAATCAGTTAGATTTGTATGACGTGGAAGGGTACCACAGAATTTCGAACTATCAGTCAGTCAGCGACAACGTAGAACCAGGCACATATATGCATCGGTTCAAGTTGCCATACCTCATTAGCGCAACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGTGGTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGAAGCAATTTTAATCTCACCATTTAAGAGAAGATAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCT] consensusID : consensus_8505#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [TGGTGCTGTTGCGCACAATGTGCATATGTGTTGTGCTGAGGATTGTGAGTGTTGATAGAGGAGTTGCTAGTGAATGAGTGAATGATTCAGTTTGAATGTTCTGTGATGTGCTGTGATGTGATGTGACGGTGAGTGTGTCGGTGGTAATGTGATAGGTGGTGTTAGTGTTTAGTTGTCTGGATGTGGGTGTGTTGGTGATATGTAGTTGTTGGTGTGTGTCTCTGATGGTGAGTGTGGATATGTTCTGACGACAATCATTCGCATGAGTGTAGTCGTTGAAGAGAGATTGGTGTGGGACAGATGGTTGTTGTGTAGTATCAGTGGAGTTATTTCTGTATGGAGTTGATG] [+] EMBL CD155223 [TGGTGCTGTTGCGCACAATGTGCATATGTGTTGTGCTGAGGATTGTGAGTGTTGATAGAGGAGTTGCTAGTGAATGAGTGAATGATTCAGTTTGAATGTTCTGTGATGTGCTGTGATGTGATGTGACGGTGAGTGTGTCGGTGGTAATGTGATAGGTGGTGTTAGTGTTTAGTTGTCTGGATGTGGGTGTGTTGGTGATATGTAGTTGTTGGTGTGTGTCTCTGATGGTGAGTGTGGATATGTTCTGACGACAATCATTCGCATGAGTGTAGTCGTTGAAGAGAGATTGGTGTGGGACAGATGGTTGTTGTGTAGTATCAGTGGAGTTATTTCTGTATGGAGTTGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8505#1 ------GGATATAGTATAGGAATGAAGAACGTTAT-GAAGCAATTTAATCTCAAGGTTTA 53 consensus_8505#2 ---------AGTCACATTGTTATGTAACAGTTGGTTGACTTAAGATTACATAATTAGTGA 51 consensus_8505#3 ------------------------------------------------------------ consensus_8505#0 ATTAAATTATGAAAACCATATATTAAATACATTATTGGCACATCTTCGTTCAGTTGTTCA 60 consensus_8505#1 AGGGAAGACAAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCT 113 consensus_8505#2 CCTAAAAGTTTCCATTAGTTACCATCACGTAATTA-GGTGGAATGTCAGTTGTGTGGCAT 110 consensus_8505#3 ------------------------------------------------------------ consensus_8505#0 TTACATGCTGGATAATCCTTTCAATTGTGTGGTGATAACACGGGCTCTCTGTTTCTCTTT 120 consensus_8505#1 AGAGTCTCCAACCATTGGTTACGATAGTCACGTG-GACCCCAACCAGGTAGTCTGCATCT 172 consensus_8505#2 GCTGCTACTCAATACCAATCAACAGATCTTTGAA-AAACCTGAAACGCAAGGAAACTTGA 169 consensus_8505#3 ------------------------TGGTGCTGTT-GCGCACAATGTGCATATGTGTTGTG 35 consensus_8505#0 CTGTTCTCTTCATGGTAACCAAGGTTTGACTGGGTAATTTCAAATAAATTAAGCATGGGG 180 * * consensus_8505#1 GTCAACATGGCTCAGACTGGAA-GTTA-----GTGACTTCAAGCACTGATGCCACGTTTT 226 consensus_8505#2 TTAGACGTGTGTAATCGTCATA-GATA-----AAAAACCAGAGAAGTACTA------TTT 217 consensus_8505#3 CTGAGGATTGTGAGTGTTGATA-GAGG-----AGTTGCTAGTGAATGAGTGA-ATGATTC 88 consensus_8505#0 CAGATTGTTATTAGTGAAAATACAATATTTGTAGTATTCCAAGGTGTAGAAAAATTAATT 240 * * * * consensus_8505#1 GGTTTGGCCGCCCCTAACTCTTTTCCAACCATCCCCTACACTAGTCAGCATAGCGCGTCG 286 consensus_8505#2 ATCTCGACAAGTCTGAAAGCTGAGTAAATAAATCT-----GTAACCGGTAAATCAGTTAG 272 consensus_8505#3 AGTTTGAATGTTCTGTGATGTGCTGTGATGTGATG-------TGACGGTGAGTGTGTCGG 141 consensus_8505#0 TTTCTGATATTTCGTGACTCAATGTAGGCCAATTCTTCAGAGAATAGATAAACAAATTGA 300 * * consensus_8505#1 --TGGTAATCGGTGTTCAGGCATACGTAACACATGGCCTAACCATC--TCAG---TCGAT 339 consensus_8505#2 --ATTTGTATGACGTGGAAGGGTACC--ACAGAATTTCGAACTATCAGTCAG---TCAGC 325 consensus_8505#3 --TGGTAATGTGATAGGTGGTGTTAGTGTTTAGTTGTCTGGATGTGGGTGTG---TTGGT 196 consensus_8505#0 ATTAGCCTTCTTCGTCCTTCCTGACGATAAATATTGAGTGGTCGCCAGTTAGAAGTTAGC 360 * * * consensus_8505#1 GAAGATTCATGGCCTCATCAACTGA-TTTACCATCACTTCCTAATACCCTGTC--TAACC 396 consensus_8505#2 GACAA--CGTAGAACCAGGCACATA-TATGC-ATCGGTTC-----AAGTTGCC--ATACC 374 consensus_8505#3 GATAT---GTAGTTGTTGGTGTGTG-TCTCTGATGGTGAGTGTGGATATGTTC--TGACG 250 consensus_8505#0 AGCCAAGTCAATCGACATCTGGATAATGTACATTCTTCTCGCTGCATATTGCCAGCAACC 420 * * * * * ** consensus_8505#1 TCACTATTACTTAACAAAGTTACCTAAATAATGATATATATATATACCTAAGTAAT---A 453 consensus_8505#2 TCATTAGCAC--AACAAGATCAACACCGGATTCATAGAAATTTTTAATTTAGTGGT---G 429 consensus_8505#3 ACAATCATTCGCATGAGTGTAGTCGTTGAAGAGAGATTGGTGTGGGAC-AGATGGT---T 306 consensus_8505#0 ACGATATCTCTGATTAGGCCTTCTGTAACATCTACAGCGAAAGGTCTTACACTTTTCAGA 480 * * * * * * * * * * consensus_8505#1 GTTGTGTTTTAGATAATGGTTGAGTTTCAGG-TATGTTTTTCCAACGTATTCTACTGAGA 512 consensus_8505#2 GTAGTATATAAAAGATAGGTTGTATATAAGGATATAGTACAGAAAGGAAGAACGTTATGA 489 consensus_8505#3 GTTGTGTAGTAT-CAGTGGAGTTATTTCTGTATGGAGTTGATG----------------- 348 consensus_8505#0 AACGCACCTGAATAGGTTGTGCGATTAATAGGCATAATGATGTATTAAAACAAACGAAAT 540 * * * * * consensus_8505#1 AGTAGAGACCTGTGCAGCCTGATCAAATCAAGCATGAATGGAATAG-TTTTCACTGATA- 570 consensus_8505#2 AGCAAT------TTTAATCTCACCATTTAAGAGAAGATAAAGAGTG-TATACACCTACGC 542 consensus_8505#3 ------------------------------------------------------------ consensus_8505#0 TAGATAACTTGTTGAAATATCTAGATGACAGGAACAGGTAGCCCAGATGTTTAAACAGGC 600 consensus_8505#1 -ATTATGATTATACTGAGAATGAACTGAAATTGANAATATTGATGACCATTTGATTGAGT 629 consensus_8505#2 CATTGTGATCG-ATTCTGAGCCATGTCACCT----------------------------- 572 consensus_8505#3 ------------------------------------------------------------ consensus_8505#0 CACCAATGATGACCTTGTGTCCGTGATAAACCAATAAGGCATCAAGCAACACTATCAGGC 660 consensus_8505#1 TTAATTTAGTANACTAAAAAGTATGTG--------------------------------- 656 consensus_8505#2 ------------------------------------------------------------ consensus_8505#3 ------------------------------------------------------------ consensus_8505#0 TTGAGTTGACCATGAACCCTTATTGATTCTCGATGTAGTTGCTGATCACCTAGCCTATCC 720 consensus_8505#1 -------------- consensus_8505#2 -------------- consensus_8505#3 -------------- consensus_8505#0 CATTTAGTCCAGAA 734 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||